Lista de obras - Sacha van Hijum - Dominio Público Uruguay

A predictive signature gene set for discriminating active from latent tuberculosis in Warao Amerindian children ⬇️

artículo científico publicado en 2013

Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis

artículo científico publicado en 2017

Advances and perspectives in computational prediction of microbial gene essentiality

artículo científico publicado en 2016

Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice.

artículo científico publicado en 2015

An In vitro Model for Bacterial Growth on Human Stratum Corneum.

artículo científico publicado en 2016

Application of state-of-art sequencing technologies to indigenous food fermentations ⬇️

artículo científico publicado el 6 de septiembre de 2012

BAGEL: a web-based bacteriocin genome mining tool.

artículo científico publicado en 2006

Bacillus pumilus reveals a remarkably high resistance to hydrogen peroxide provoked oxidative stress

artículo científico publicado en 2014

Characterization of the global impact of low temperature gas plasma on vegetative microorganisms

article

CiVi: circular genome visualization with unique features to analyze sequence elements.

artículo científico publicado en 2015

Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome ⬇️

artículo científico publicado el 1 de enero de 2012

Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium.

artículo científico publicado en 2010

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? ⬇️

artículo científico publicado el 10 de julio de 2012

Degenerate target sites mediate rapid primed CRISPR adaptation.

artículo científico publicado en 2014

Diversity in robustness of Lactococcus lactis strains during heat stress, oxidative stress, and spray drying stress

artículo científico publicado en 2013

Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU

artículo científico publicado en 2015

Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus LBB.B5.

artículo científico publicado en 2016

Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine.

artículo científico publicado en 2015

Draft Genome Sequence of Streptococcus thermophilus C106, a Dairy Isolate from an Artisanal Cheese Produced in the Countryside of Ireland.

artículo científico publicado en 2015

Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains.

artículo científico publicado en 2017

Draft Genome Sequences of 24 Lactococcus lactis Strains

artículo científico publicado en 2017

ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.

artículo científico publicado en 2012

Effect of growth rate and selection pressure on rates of transfer of an antibiotic resistance plasmid between E. coli strains

artículo científico publicado en 2014

FACIL: Fast and Accurate Genetic Code Inference and Logo

artículo científico publicado en 2011

Fermentation-induced variation in heat and oxidative stress phenotypes of Lactococcus lactis MG1363 reveals transcriptome signatures for robustness

artículo científico publicado en 2014

Fractional factorial design for optimization of the SELDI protocol for human adipose tissue culture media.

artículo científico publicado en 2007

From microbial gene essentiality to novel antimicrobial drug targets

artículo científico publicado en 2014

Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen

artículo científico publicado en 2012

Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.

artículo científico publicado en 2013

Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730).

artículo científico publicado en 2012

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1 ⬇️

artículo científico publicado el 20 de septiembre de 2012

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.

artículo científico publicado en 2011

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

artículo científico publicado en 2017

Genotype-phenotype matching analysis of 38 Lactococcus lactisstrains using random forest methods ⬇️

artículo científico publicado el 26 de marzo de 2013

Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin

artículo científico publicado en 2016

Gut microbiome in ADHD and its relation to neural reward anticipation

artículo científico

Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.

artículo científico publicado en 2018

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.

artículo científico publicado en 2008

Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

artículo científico publicado en 2009

MicroPreP: a cDNA microarray data pre-processing framework.

artículo científico publicado en 2003

Microbial bioinformatics for food safety and production

artículo científico publicado en 2016

Microbiome dynamics of human epidermis following skin barrier disruption.

artículo científico publicado en 2012

Mixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricus

artículo científico publicado en 2010

Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis.

artículo científico publicado en 2010

Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877

artículo científico publicado en 2015

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

artículo científico publicado en 2016

PreP: gene expression data pre-processing

artículo científico publicado en 2003

Primary cilia-regulated transcriptome in the renal collecting duct

artículo científico publicado en 2018

Projector: automatic contig mapping for gap closure purposes.

artículo científico publicado en 2003

Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction

artículo científico publicado en 2013

Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae.

artículo científico

Reply to Meisel et al

artículo científico publicado en 2016

Resequencing of the Lactobacillus plantarum Strain WJL Genome.

artículo científico publicado en 2015

SIMAGE: simulation of DNA-microarray gene expression data

artículo científico publicado en 2006

Saturation and quantization reduction in microarray experiments using two scans at different sensitivities

artículo científico publicado en 2004

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer.

artículo científico

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.

artículo científico

Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis

artículo científico publicado en 2016

Structure-function relationships of glucansucrase and fructansucrase enzymes from lactic acid bacteria

artículo científico publicado en 2006

The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element.

artículo científico publicado en 2005

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

artículo científico publicado en 2014

The relative value of operon predictions.

artículo científico publicado en 2008

Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in SK11

artículo científico publicado en 2018

Transcriptome analysis reveals mechanisms by which Lactococcus lactis acquires nisin resistance

artículo científico

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

artículo científico publicado en 2014

Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes.

artículo científico publicado en 2016

UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons.

artículo científico publicado en 2003

Use of propidium monoazide for selective profiling of viable microbial cells during Gouda cheese ripening

scientific article published on 25 March 2016

Lista de obras de Sacha van Hijum

A predictive signature gene set for discriminating active from latent tuberculosis in Warao Amerindian children ⬇️

Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis

Advances and perspectives in computational prediction of microbial gene essentiality

Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice.

An In vitro Model for Bacterial Growth on Human Stratum Corneum.

Application of state-of-art sequencing technologies to indigenous food fermentations ⬇️

BAGEL: a web-based bacteriocin genome mining tool.

Bacillus pumilus reveals a remarkably high resistance to hydrogen peroxide provoked oxidative stress

Characterization of the global impact of low temperature gas plasma on vegetative microorganisms

CiVi: circular genome visualization with unique features to analyze sequence elements.

Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome ⬇️

Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium.

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? ⬇️

Degenerate target sites mediate rapid primed CRISPR adaptation.

Diversity in robustness of Lactococcus lactis strains during heat stress, oxidative stress, and spray drying stress

Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU

Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus LBB.B5.

Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine.

Draft Genome Sequence of Streptococcus thermophilus C106, a Dairy Isolate from an Artisanal Cheese Produced in the Countryside of Ireland.

Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains.

Draft Genome Sequences of 24 Lactococcus lactis Strains

ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.

Effect of growth rate and selection pressure on rates of transfer of an antibiotic resistance plasmid between E. coli strains

FACIL: Fast and Accurate Genetic Code Inference and Logo

Fermentation-induced variation in heat and oxidative stress phenotypes of Lactococcus lactis MG1363 reveals transcriptome signatures for robustness

Fractional factorial design for optimization of the SELDI protocol for human adipose tissue culture media.

From microbial gene essentiality to novel antimicrobial drug targets

Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen

Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman.

Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730).

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1 ⬇️

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays.

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

Genotype-phenotype matching analysis of 38 Lactococcus lactisstrains using random forest methods ⬇️

Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin

Gut microbiome in ADHD and its relation to neural reward anticipation

Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.

Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

MicroPreP: a cDNA microarray data pre-processing framework.

Microbial bioinformatics for food safety and production

Microbiome dynamics of human epidermis following skin barrier disruption.

Mixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricus

Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis.

Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

PreP: gene expression data pre-processing

Primary cilia-regulated transcriptome in the renal collecting duct

Projector: automatic contig mapping for gap closure purposes.

Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction

Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae.

Reply to Meisel et al

Resequencing of the Lactobacillus plantarum Strain WJL Genome.

SIMAGE: simulation of DNA-microarray gene expression data

Saturation and quantization reduction in microarray experiments using two scans at different sensitivities

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer.

SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.

Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis

Structure-function relationships of glucansucrase and fructansucrase enzymes from lactic acid bacteria

The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element.

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

The relative value of operon predictions.

Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in SK11

Transcriptome analysis reveals mechanisms by which Lactococcus lactis acquires nisin resistance

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

Transmissible Mycobacterium tuberculosis Strains Share Genetic Markers and Immune Phenotypes.

UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons.

Use of propidium monoazide for selective profiling of viable microbial cells during Gouda cheese ripening