Lista de obras - Fredrik Levander - Dominio Público Uruguay

A community proposal to integrate proteomics activities in ELIXIR

artículo científico publicado en 2017

A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients

article

Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML.

artículo científico

Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

artículo científico publicado en 2004

An adaptive alignment algorithm for quality-controlled label-free LC-MS.

artículo científico publicado en 2013

An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations

artículo científico publicado en 2020

An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants

artículo científico publicado en 2023

Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths

artículo científico publicado en 2017

Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE.

artículo científico

Automated methods for improved protein identification by peptide mass fingerprinting

artículo científico publicado en 2004

Automated protein identification by the combination of MALDI MS and MS/MS spectra from different instruments

artículo científico publicado en 2005

Automated quality control system for LC-SRM setups

artículo científico publicado en 2013

Automated reporting from gel-based proteomics experiments using the open source Proteios database application

artículo científico publicado en 2007

Automated selected reaction monitoring software for accurate label-free protein quantification

artículo científico publicado en 2012

BEX1 acts as a tumor suppressor in acute myeloid leukemia.

artículo científico

Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis

artículo científico publicado en 2006

Comparative Membrane-Associated Proteomics of Three Different Immune Reactions in Potato.

artículo científico publicado en 2018

Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae

artículo científico

Critical comparison of multidimensional separation methods for increasing protein expression coverage

artículo científico publicado en 2012

DIANA--algorithmic improvements for analysis of data-independent acquisition MS data

artículo científico publicado en 2014

Data on haplotype-supported immunoglobulin germline gene inference

artículo científico publicado en 2017

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis

artículo científico publicado en 2014

Data processing methods and quality control strategies for label-free LC-MS protein quantification

artículo científico publicado en 2013

Development of Reagents for Differential Protein Quantitation by Subtractive Parent (Precursor) Ion Scanning

scientific article published on 08 February 2007

Differential proteomic analysis of HT29 Cl.16E and intestinal epithelial cells by LC ESI/QTOF mass spectrometry

artículo científico publicado en 2009

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

artículo científico

Enhanced exopolysaccharide production by metabolic engineering of Streptococcus thermophilus

artículo científico publicado en 2002

Exopolysaccharide-producing strains of thermophilic lactic acid bacteria cluster into groups according to their EPS structure.

artículo científico publicado en 2001

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

artículo científico publicado en 2011

Generic workflow for quality assessment of quantitative label-free LC-MS analysis

artículo científico publicado en 2011

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

artículo científico publicado en 2009

Human Proteinpedia enables sharing of human protein data

artículo científico publicado en 2008

Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis

artículo científico publicado en 2011

Improved label-free LC-MS analysis by wavelet-based noise rejection

artículo científico publicado en 2010

Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance

artículo científico publicado en 2020

Is label-free LC-MS/MS ready for biomarker discovery?

artículo científico

Laboratory Data and Sample Management for Proteomics ⬇️

artículo científico publicado el 1 de enero de 2011

Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching

artículo científico publicado en 2008

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

artículo científico publicado en 2004

Multimodel pathway enrichment methods for functional evaluation of expression regulation

artículo científico publicado en 2012

NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

artículo científico publicado en 2016

Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets

artículo científico publicado en 2014

NormalyzerDE: Online tool for improved normalization of omics expression data and high-sensitivity differential expression analysis

artículo científico publicado en 2018

Numerical compression schemes for proteomics mass spectrometry data

artículo científico publicado en 2014

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

artículo científico publicado en 2021

Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery

artículo científico publicado en 2017

Paranoid potato: phytophthora-resistant genotype shows constitutively activated defense

artículo científico publicado en 2012

Patient-Derived Xenograft Models Reveal Intratumor Heterogeneity and Temporal Stability in Neuroblastoma

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

artículo científico publicado en 2014

Physiological role of beta-phosphoglucomutase in Lactococcus lactis

artículo científico publicado en 2001

Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400.

artículo científico publicado en 2009

Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum

artículo científico publicado en 2013

Proteomic analysis of Phytophthora infestans reveals the importance of cell wall proteins in pathogenicity.

artículo científico publicado en 2017

Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

article

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

artículo científico publicado en 2008

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

article

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

artículo científico publicado en 2014

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

artículo científico publicado en 2009

Quantification of membrane proteins using nonspecific protease digestions

artículo científico publicado en 2009

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

artículo científico

Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

artículo científico publicado en 2014

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons

artículo científico publicado en 2011

Representation of selected-reaction monitoring data in the mzQuantML data standard

artículo científico publicado en 2015

Requirement for phosphoglucomutase in exopolysaccharide biosynthesis in glucose- and lactose-utilizing Streptococcus thermophilus

artículo científico publicado en 2001

Small-scale analysis of exopolysaccharides from Streptococcus thermophilus grown in a semi-defined medium

artículo científico publicado en 2001

Starch-hydrolyzing bacteria from Ethiopian soda lakes.

artículo científico publicado en 2001

Targeted Proteomics Approach for Precision Plant Breeding

artículo científico

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

artículo científico publicado en 2013

The protein expression of Streptococcus pyogenes is significantly influenced by human plasma

artículo científico publicado en 2005

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

artículo científico publicado en 2009

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

scientific article published on 22 July 2019

TraML--a standard format for exchange of selected reaction monitoring transition lists

artículo científico

Trehalose-6-phosphate phosphorylase is part of a novel metabolic pathway for trehalose utilization in Lactococcus lactis.

artículo científico publicado en 2001

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

artículo científico publicado en 2023

Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry

artículo científico publicado en 2008

mzML--a community standard for mass spectrometry data

artículo científico publicado en 2011

Lista de obras de Fredrik Levander

A community proposal to integrate proteomics activities in ELIXIR

A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients

Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML.

Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

An adaptive alignment algorithm for quality-controlled label-free LC-MS.

An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations

An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants

Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths

Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE.

Automated methods for improved protein identification by peptide mass fingerprinting

Automated protein identification by the combination of MALDI MS and MS/MS spectra from different instruments

Automated quality control system for LC-SRM setups

Automated reporting from gel-based proteomics experiments using the open source Proteios database application

Automated selected reaction monitoring software for accurate label-free protein quantification

BEX1 acts as a tumor suppressor in acute myeloid leukemia.

Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis

Comparative Membrane-Associated Proteomics of Three Different Immune Reactions in Potato.

Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae

Critical comparison of multidimensional separation methods for increasing protein expression coverage

DIANA--algorithmic improvements for analysis of data-independent acquisition MS data

Data on haplotype-supported immunoglobulin germline gene inference

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis

Data processing methods and quality control strategies for label-free LC-MS protein quantification

Development of Reagents for Differential Protein Quantitation by Subtractive Parent (Precursor) Ion Scanning

Differential proteomic analysis of HT29 Cl.16E and intestinal epithelial cells by LC ESI/QTOF mass spectrometry

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

Enhanced exopolysaccharide production by metabolic engineering of Streptococcus thermophilus

Exopolysaccharide-producing strains of thermophilic lactic acid bacteria cluster into groups according to their EPS structure.

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

Generic workflow for quality assessment of quantitative label-free LC-MS analysis

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

Human Proteinpedia enables sharing of human protein data

Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis

Improved label-free LC-MS analysis by wavelet-based noise rejection

Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance

Is label-free LC-MS/MS ready for biomarker discovery?

Laboratory Data and Sample Management for Proteomics ⬇️

Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

Multimodel pathway enrichment methods for functional evaluation of expression regulation

NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

Normalyzer: a tool for rapid evaluation of normalization methods for omics data sets

NormalyzerDE: Online tool for improved normalization of omics expression data and high-sensitivity differential expression analysis

Numerical compression schemes for proteomics mass spectrometry data

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery

Paranoid potato: phytophthora-resistant genotype shows constitutively activated defense

Patient-Derived Xenograft Models Reveal Intratumor Heterogeneity and Temporal Stability in Neuroblastoma

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

Physiological role of beta-phosphoglucomutase in Lactococcus lactis

Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400.

Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum

Proteomic analysis of Phytophthora infestans reveals the importance of cell wall proteins in pathogenicity.

Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea

Proteomics Data Collection – The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands

Quantification of membrane proteins using nonspecific protease digestions

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons

Representation of selected-reaction monitoring data in the mzQuantML data standard

Requirement for phosphoglucomutase in exopolysaccharide biosynthesis in glucose- and lactose-utilizing Streptococcus thermophilus

Small-scale analysis of exopolysaccharides from Streptococcus thermophilus grown in a semi-defined medium

Starch-hydrolyzing bacteria from Ethiopian soda lakes.

Targeted Proteomics Approach for Precision Plant Breeding

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

The protein expression of Streptococcus pyogenes is significantly influenced by human plasma

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

TraML--a standard format for exchange of selected reaction monitoring transition lists

Trehalose-6-phosphate phosphorylase is part of a novel metabolic pathway for trehalose utilization in Lactococcus lactis.

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry

mzML--a community standard for mass spectrometry data