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Lista de obras de Tuula A Nyman

3rd Annual FinnProt Meeting: from cells to systems

artículo científico publicado en 2008

A Streptococcus uberis transposon mutant screen reveals a negative role for LiaR homologue in biofilm formation.

artículo científico publicado en 2014

A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments

artículo científico publicado en 2005

A large set of estrogen receptor β‐interacting proteins identified by tandem affinity purification in hormone‐responsive human breast cancer cell nuclei ⬇️

artículo científico publicado el 1 de diciembre de 2010

A mitochondrial ribosomal and RNA decay pathway blocks cell proliferation.

artículo científico publicado en 2013

A proteome database of human primary T helper cells.

artículo científico publicado en 2001

Absence of CCR4 exacerbates skin inflammation in an oxazolone-induced contact hypersensitivity model.

artículo científico publicado en 2010

Absence of NLRP3 Inflammasome in Hematopoietic Cells Reduces Adverse Remodeling After Experimental Myocardial Infarction

artículo científico publicado en 2020

Actin and RIG-I/MAVS signaling components translocate to mitochondria upon influenza A virus infection of human primary macrophages.

artículo científico publicado en 2009

Activating stimuli induce platelet microRNA modulation and proteome reorganisation.

artículo científico publicado en 2015

Akt inhibitor MK2206 prevents influenza pH1N1 virus infection in vitro.

artículo científico publicado en 2014

An update on clinical proteomics in Alzheimer's research

artículo científico publicado en 2009

Ancestral allele of DNA polymerase gamma modifies antiviral tolerance

artículo científico publicado en 2024

Anticancer compound ABT-263 accelerates apoptosis in virus-infected cells and imbalances cytokine production and lowers survival rates of infected mice

scientific article published on 25 July 2013

Antiviral Properties of Chemical Inhibitors of Cellular Anti-Apoptotic Bcl-2 Proteins

artículo científico publicado en 2017

Biological properties of extracellular vesicles and their physiological functions.

artículo científico publicado en 2015

Calpain Activity Is Essential for ATP-Driven Unconventional Vesicle-Mediated Protein Secretion and Inflammasome Activation in Human Macrophages

artículo científico publicado en 2016

Characterization of microsomal fraction proteome in human lymphoblasts reveals the down-regulation of galectin-1 by interleukin-12.

artículo científico publicado en 2005

Comparative Exoprotein Profiling of Different Staphylococcus epidermidis Strains Reveals Potential Link between Nonclassical Protein Export and Virulence

artículo científico publicado en 2014

Comparative Proteome Cataloging of Lactobacillus rhamnosus Strains GG and Lc705

artículo científico publicado en 2011

Comparative analysis of excretory-secretory antigens of Trichinella spiralis and Trichinella britovi muscle larvae by two-dimensional difference gel electrophoresis and immunoblotting

artículo científico publicado en 2012

Comparative analysis of nuclear estrogen receptor alpha and beta interactomes in breast cancer cells.

artículo científico publicado en 2010

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.

artículo científico

Comparison of PDQuest and Progenesis software packages in the analysis of two-dimensional electrophoresis gels

artículo científico publicado en 2003

Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.

artículo científico publicado en 2010

Constitutively active cytoplasmic c-Jun N-terminal kinase 1 is a dominant regulator of dendritic architecture: role of microtubule-associated protein 2 as an effector

scientific journal article

Cytosolic RNA recognition pathway activates 14-3-3 protein mediated signaling and caspase-dependent disruption of cytokeratin network in human keratinocytes.

artículo científico publicado en 2010

Dectin-1 pathway activates robust autophagy-dependent unconventional protein secretion in human macrophages.

artículo científico publicado en 2014

Determination of nine β-blockers in serum by micellar electrokinetic capillary chromatography

artículo científico publicado en 1994

Distinct Pattern of Endoplasmic Reticulum Protein Processing and Extracellular Matrix Proteins in Functioning and Silent Corticotroph Pituitary Adenomas

scientific article published on 14 October 2020

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

artículo científico publicado en 2011

Ezrin is down-regulated in diabetic kidney glomeruli and regulates actin reorganization and glucose uptake via GLUT1 in cultured podocytes

artículo científico publicado en 2014

Filtering strategies for improving protein identification in high-throughput MS/MS studies

artículo científico publicado en 2009

Food-Like Growth Conditions Support Production of Active Vitamin B12 by Propionibacterium freudenreichii 2067 without DMBI, the Lower Ligand Base, or Cobalt Supplementation

artículo científico publicado en 2017

Function and Regulation of Noncanonical Caspase-4/5/11 Inflammasome

artículo científico publicado en 2020

Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains.

artículo científico publicado en 2014

Geometrical distortions in two-dimensional gels: applicable correction methods.

artículo científico publicado en 2005

Global Characterization of Protein Secretion from Human Macrophages Following Non-canonical Caspase-4/5 Inflammasome Activation

artículo científico publicado en 2017

Global secretome characterization of herpes simplex virus 1-infected human primary macrophages.

artículo científico publicado en 2012

Growth Mode and Physiological State of Cells Prior to Biofilm Formation Affect Immune Evasion and Persistence of Staphylococcus aureus

scientific article published on 12 January 2020

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium.

artículo científico publicado en 2011

HSV-1 ICP27 targets the TBK1-activated STING signalsome to inhibit virus-induced type I IFN expression

artículo científico publicado en 2016

Hierarchical grid transformation for image warping in the analysis of two-dimensional electrophoresis gels

artículo científico publicado en 2002

HnRNPH1/H2, U1 snRNP, and U11 snRNP cooperate to regulate the stability of the U11-48K pre-mRNA.

artículo científico publicado en 2013

Identification of a hormone-regulated dynamic nuclear actin network associated with estrogen receptor alpha in human breast cancer cell nuclei.

artículo científico publicado en 2010

Identification of cytoplasmic proteins interacting with unliganded estrogen receptor α and β in human breast cancer cells

artículo científico publicado en 2015

Identification of new Golgi complex specific proteins by direct organelle proteomic analysis.

artículo científico publicado en 2006

Identification of novel Stat6 regulated proteins in IL-4-treated mouse lymphocytes

artículo científico publicado en 2009

Identification of proteins associated with ligand-activated estrogen receptor α in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS

artículo científico publicado en 2011

Immuno-modulating properties of saliphenylhalamide, SNS-032, obatoclax, and gemcitabine.

artículo científico publicado en 2015

Influenza virus NS1 protein binds cellular DNA to block transcription of antiviral genes

artículo científico publicado en 2016

Inhibition of histone methyltransferase DOT1L silences ERα gene and blocks proliferation of antiestrogen-resistant breast cancer cells

article

Interaction Proteomics Identifies ERbeta Association with Chromatin Repressive Complexes to Inhibit Cholesterol Biosynthesis and Exert An Oncosuppressive Role in Triple-negative Breast Cancer

scientific article published on 02 December 2019

Interleukin-4 Inhibits Caspase-3 by Regulating Several Proteins in the Fas Pathway during Initial Stages of Human T Helper 2 Cell Differentiation

article

Isolation and characterization of platelet-derived extracellular vesicles

artículo científico publicado en 2014

JNJ872 inhibits influenza A virus replication without altering cellular antiviral responses.

artículo científico publicado en 2016

Legumain is upregulated in acute cardiovascular events and associated with improved outcome - potentially related to anti-inflammatory effects on macrophages

scientific article published on 14 December 2019

Low Cellular NAD+ Compromises Lipopolysaccharide-Induced Inflammatory Responses via Inhibiting TLR4 Signal Transduction in Human Monocytes

scientific article published on 19 August 2019

Mass spectrometry-based proteomic exploration of the human immune system: focus on the inflammasome, global protein secretion, and T cells.

artículo científico publicado en 2017

Mitochondrial stress response triggered by defects in protein synthesis quality control

artículo científico publicado en 2019

Molecular mechanisms of selective estrogen receptor modulator activity in human breast cancer cells: identification of novel nuclear cofactors of antiestrogen-ERα complexes by interaction proteomics

artículo científico publicado en 2012

Molecular networks of DYX1C1 gene show connection to neuronal migration genes and cytoskeletal proteins

artículo científico publicado en 2012

Multi-Omics Studies towards Novel Modulators of Influenza A Virus-Host Interaction

artículo científico publicado en 2016

Multiplexed proteomic analysis of oxidation and concentrations of cerebrospinal fluid proteins in Alzheimer disease

artículo científico publicado en 2007

Multistep phosphorylation by oncogenic kinases enhances the degradation of the NF2 tumor suppressor merlin

artículo científico publicado en 2011

Mutation update and genotype-phenotype correlations of novel and previously described mutations in TPM2 and TPM3 causing congenital myopathies

artículo científico publicado en 2014

Netrin-4 promotes glioblastoma cell proliferation through integrin β4 signaling

artículo científico publicado en 2012

New Insights into Staphylococcus aureus Stress Tolerance and Virulence Regulation from an Analysis of the Role of the ClpP Protease in the Strains Newman, COL, and SA564

article

OSBP-related protein 3 (ORP3) coupling with VAMP-associated protein A regulates R-Ras activity.

artículo científico publicado en 2014

Oxidative modification of proteins in the frontal cortex of Alzheimer's disease brain

artículo científico publicado en 2005

Penicillin G increases the synthesis of a suicidal marker (CidC) and virulence (HlgBC) proteins in Staphylococcus aureus biofilm cells.

artículo científico publicado en 2015

Peroxiredoxins and tropomyosins as plasma biomarkers for lung cancer and asbestos exposure

artículo científico publicado en 2012

PhosFox: a bioinformatics tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data

artículo científico publicado en 2014

Phosphoproteome characterization reveals that Sendai virus infection activates mTOR signaling in human epithelial cells

artículo científico publicado en 2015

Phosphoproteomics combined with quantitative 14-3-3-affinity capture identifies SIRT1 and RAI as novel regulators of cytosolic double-stranded RNA recognition pathway.

artículo científico publicado en 2014

Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages

artículo científico publicado en 2016

Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs

artículo científico publicado en 2014

Pripper: prediction of caspase cleavage sites from whole proteomes

artículo científico publicado en 2010

Proteome analysis of human macrophages reveals the upregulation of manganese-containing superoxide dismutase after toll-like receptor activation

article

Proteome analysis reveals ubiquitin-conjugating enzymes to be a new family of interferon-alpha-regulated genes.

artículo científico publicado en 2000

Proteome characterization of human NK-92 cells identifies novel IFN-alpha and IL-15 target genes.

artículo científico publicado en 2005

Proteome characterization of human T helper 1 and 2 cells

artículo científico publicado en 2004

Proteome profiling of interleukin-12 treated human T helper cells

artículo científico publicado en 2005

Proteomic analysis of glial fibrillary acidic protein in Alzheimer's disease and aging brain

artículo científico publicado en 2005

Proteomic and Bioinformatic Characterization of Extracellular Vesicles Released from Human Macrophages upon Influenza A Virus Infection

artículo científico publicado en 2016

Proteomic and transcriptomic characterization of interferon-?-induced human primary T helper cells

scientific article published on 01 February 2005

Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG.

artículo científico publicado en 2010

Proteomics to study macrophage response to viral infection.

artículo científico publicado en 2017

Quality classification of tandem mass spectrometry data

artículo científico publicado en 2005

Quantitative Proteomics of Extracellular Vesicles Released from Human Monocyte-Derived Macrophages upon β-Glucan Stimulation

artículo científico publicado en 2014

Quantitative changes in Gimap3 and Gimap5 expression modify mitochondrial DNA segregation in mice.

artículo científico publicado en 2015

Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells.

artículo científico publicado en 2018

Quantitative proteomics analysis of the nuclear fraction of human CD4+ cells in the early phases of IL-4-induced Th2 differentiation

artículo científico publicado en 2010

Quantitative proteomics reveals GIMAP family proteins 1 and 4 to be differentially regulated during human T helper cell differentiation

artículo científico publicado en 2009

Quantitative subcellular proteome and secretome profiling of influenza A virus-infected human primary macrophages

artículo científico publicado en 2011

Recognition of cytoplasmic RNA results in cathepsin-dependent inflammasome activation and apoptosis in human macrophages.

artículo científico publicado en 2011

Regulation of kynurenine biosynthesis during influenza virus infection.

artículo científico publicado en 2016

Respiratory chain signalling is essential for adaptive remodelling following cardiac ischaemia

artículo científico publicado en 2020

Sec1p and Mso1p C-terminal tails cooperate with the SNAREs and Sec4p in polarized exocytosis

artículo científico publicado en 2010

Splicing of platelet resident pre-mRNAs upon activation by physiological stimuli results in functionally relevant proteome modifications.

artículo científico publicado en 2018

Statistical detection of quantitative protein biomarkers provides insights into signaling networks deregulated in acute myeloid leukemia.

artículo científico publicado en 2014

Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials

scientific article published on 20 November 2019

Temperature-induced structural transition in-situ in porcine lens--changes observed in void size distribution

artículo científico publicado en 2010

Thaumatin-like protein and baker's respiratory allergy

artículo científico publicado en 2010

The Antiviral Alkaloid Berberine Reduces Chikungunya Virus-Induced Mitogen-Activated Protein Kinase Signaling

artículo científico publicado en 2016

The C terminus of NS1 protein of influenza A/WSN/1933(H1N1) virus modulates antiviral responses in infected human macrophages and mice.

artículo científico publicado en 2015

The Cell Wall Polymer Lipoteichoic Acid Becomes Nonessential in Staphylococcus aureus Cells Lacking the ClpX Chaperone

artículo científico publicado en 2016

The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.

artículo científico publicado en 2017

Trichothecene mycotoxins activate NLRP3 inflammasome through a P2X7 receptor and Src tyrosine kinase dependent pathway

artículo científico publicado en 2013

Uncovering surface-exposed antigens of Lactobacillus rhamnosus by cell shaving proteomics and two-dimensional immunoblotting

artículo científico publicado en 2014

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