Lista de obras - Bas Teusink - Dominio Público Uruguay

'Slave' metabolites and enzymes. A rapid way of delineating metabolic control

artículo científico publicado en 2000

A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the <i>Saccharomyces</i> Genus in Fermentation

artículo científico publicado en 2021

A Specific Mutation in the Promoter Region of the Silent cel Cluster Accounts for the Appearance of Lactose-Utilizing Lactococcus lactis MG1363 ⬇️

artículo científico publicado el 1 de junio de 2012

A centrifugation-based clearing method allows high-throughput acidification and growth-rate measurements in milk

artículo científico publicado en 2021

A critical view of metabolic network adaptations

artículo científico publicado en 2008

A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803.

artículo científico publicado en 2014

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

scientific article (publication date: 2001)

A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris

scientific article published on 02 February 2019

A novel consortium of Lactobacillus rhamnosus and Streptococcus thermophilus for increased access to functional fermented foods

artículo científico publicado en 2015

A practical guide to genome-scale metabolic models and their analysis

artículo científico publicado en 2011

A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae

scientific article published on 01 February 2020

A systematic assessment of current genome-scale metabolic reconstruction tools

artículo científico publicado en 2019

Accelerating the reconstruction of genome-scale metabolic networks

artículo científico publicado en 2006

Acute inhibition of hepatic beta-oxidation in APOE*3Leiden mice does not affect hepatic VLDL secretion or insulin sensitivity

artículo científico publicado en 2005

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

artículo científico publicado en 2019

Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model

artículo científico publicado en 2006

Apolipoprotein C3 deficiency results in diet-induced obesity and aggravated insulin resistance in mice

artículo científico publicado en 2005

Around the growth phase transition S. cerevisiae's make-up favours sustained oscillations of intracellular metabolites

artículo científico publicado en 1993

Availability of public goods shapes the evolution of competing metabolic strategies

artículo científico publicado en 2013

Bet-hedging during bacterial diauxic shift

artículo científico publicado en 2014

Binding proteins enhance specific uptake rate by increasing the substrate-transporter encounter rate

artículo científico publicado en 2015

Bioinformatics and systems biology: bridging the gap between heterogeneous student backgrounds

artículo científico publicado en 2013

CD36 deficiency increases insulin sensitivity in muscle, but induces insulin resistance in the liver in mice

artículo científico publicado en 2003

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

artículo científico publicado en 2000

Co-regulation of metabolic genes is better explained by flux coupling than by network distance

artículo científico publicado en 2008

Community flux balance analysis for microbial consortia at balanced growth

artículo científico publicado en 2013

Comparative systems biology: from bacteria to man ⬇️

artículo científico publicado el 1 de septiembre de 2010

Compartmentation protects trypanosomes from the dangerous design of glycolysis

artículo científico publicado en 2000

Constraint-based stoichiometric modelling from single organisms to microbial communities.

artículo científico publicado en 2016

Contribution of fatty acids released from lipolysis of plasma triglycerides to total plasma fatty acid flux and tissue-specific fatty acid uptake.

artículo científico publicado en 2003

Control analysis of glycolytic oscillations

artículo científico publicado en 1996

Control and regulation of metabolic fluxes in microbes by substrates and enzymes

artículo científico publicado en 1993

Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations

scientific article published on 01 July 1996

Correlation between sequence conservation and the genomic context after gene duplication

artículo científico publicado en 2005

Correlation between sequence conservation and the genomic context after gene duplication.

artículo científico publicado en 2005

Development of a minimal growth medium for Lactobacillus plantarum

artículo científico publicado en 2010

Dynamic elementary mode modelling of non-steady state flux data.

artículo científico publicado en 2018

Effect of amino acid availability on vitamin B12 production in Lactobacillus reuteri

artículo científico publicado en 2009

Elementary Growth Modes provide a molecular description of cellular self-fabrication

scientific article published on 27 January 2020

Evolutionary engineering to enhance starter culture performance in food fermentations

artículo científico

Evolutionary pressures on microbial metabolic strategies in the chemostat

artículo científico publicado en 2016

Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features

artículo científico publicado en 2011

FAME, the Flux Analysis and Modeling Environment

artículo científico publicado en 2012

Fatal attraction in glycolysis: how Saccharomyces cerevisiae manages sudden transitions to high glucose.

artículo científico publicado en 2014

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

scientific article published on 25 June 2019

Functional identification in Lactobacillus reuteri of a PocR-like transcription factor regulating glycerol utilization and vitamin B12 synthesis

artículo científico publicado en 2011

Further Elucidation of Galactose Utilization in MG1363

scientific article published on 03 August 2018

Gene network requirements for regulation of metabolic gene expression to a desired state

artículo científico publicado en 2013

Genome data mining of lactic acid bacteria: the impact of bioinformatics

artículo científico publicado en 2004

Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation

scientific article published on 05 December 2019

Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria

artículo científico publicado en 2009

Genome-scale reconstruction of the Streptococcus pyogenes M49 metabolic network reveals growth requirements and indicates potential drug targets

artículo científico publicado en 2016

How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization

artículo científico publicado en 2015

Hyperlipidemia in APOE2 transgenic mice is ameliorated by a truncated apoE variant lacking the C-terminal domain.

artículo científico publicado en 2002

In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments.

artículo científico publicado en 2005

In vivo characterisation of fluorescent proteins in budding yeast

artículo científico publicado en 2019

Increased hepatic insulin sensitivity together with decreased hepatic triglyceride stores in hormone-sensitive lipase-deficient mice

artículo científico publicado en 2003

Inferring differences in the distribution of reaction rates across conditions

artículo científico publicado en 2012

Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models

artículo científico publicado en 2015

Intestinal lipid absorption is not affected in CD36 deficient mice

artículo científico publicado en 2002

Lactic Acid Bacteria: embarking on 30 more years of research

artículo científico publicado en 2014

Leptin deficiency per se dictates body composition and insulin action in ob/ob mice.

artículo científico

Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells

artículo científico publicado en 2014

Low affinity uniporter carrier proteins can increase net substrate uptake rate by reducing efflux

artículo científico publicado en 2018

MEMOTE for standardized genome-scale metabolic model testing

artículo científico publicado en 2020

Maintaining maximal metabolic flux by gene expression control

article

MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis

artículo científico publicado en 2014

Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community

artículo científico publicado en 2021

Metabolic models for rational improvement of lactic acid bacteria as cell factories.

artículo científico publicado en 2005

Metabolic shifts: a fitness perspective for microbial cell factories

artículo científico publicado en 2012

Metabolic states with maximal specific rate carry flux through an elementary flux mode

artículo científico publicado en 2014

Metabolism at evolutionary optimal States.

artículo científico

Metabolite Depletion Affects Flux Profiling of Cell Lines

artículo científico publicado en 2018

Microbial competition reduces metabolic interaction distances to the low µm-range

artículo científico publicado en 2020

Microdroplet screening and selection for improved microbial production of extracellular compounds

artículo científico publicado en 2019

Model-based quantification of metabolic interactions from dynamic microbial-community data

artículo científico publicado en 2017

Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation

artículo científico publicado en 2014

Multi-tasking of biosynthetic and energetic functions of glycolysis explained by supply and demand logic

artículo científico publicado en 2014

Optimality principles in the regulation of metabolic networks

artículo científico publicado en 2012

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

artículo científico publicado en 2014

Predicting metabolic fluxes using gene expression differences as constraints

artículo científico publicado en 2011

Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough.

artículo científico

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?

artículo científico publicado en 2015

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

artículo científico publicado en 2021

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

artículo científico publicado en 2020

Public goods and metabolic strategies

artículo científico publicado en 2016

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

artículo científico publicado en 2020

Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis

scientific article published on 27 April 2020

Role of phosphate in the central metabolism of two lactic acid bacteria--a comparative systems biology approach

artículo científico publicado en 2012

Selection for Cell Yield Does Not Reduce Overflow Metabolism in <i>Escherichia coli</i>

artículo científico publicado en 2021

Shifts in growth strategies reflect tradeoffs in cellular economics

artículo científico publicado en 2009

Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions

artículo científico publicado en 2011

Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.

artículo científico publicado en 2016

Synchronized Heat Flux Oscillations in Yeast Cell Populations

artículo científico publicado en 1996

Systems biology from micro-organisms to human metabolic diseases: the role of detailed kinetic models.

artículo científico publicado en 2010

Systems biology of lactic acid bacteria: a critical review.

artículo científico

Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure

artículo científico publicado en 2015

The VLDL receptor plays a major role in chylomicron metabolism by enhancing LPL-mediated triglyceride hydrolysis

artículo científico publicado en 2004

The danger of metabolic pathways with turbo design

scientific journal article

The evidence that pseudovitamin B12is biologically active in mammals is still lacking - a comment on Molinaet al.’s (2009) experimental design

article

The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates

scientific article published on 11 March 2019

The transport of triglycerides through the secretory pathway of hepatocytes is impaired in apolipoprotein E deficient mice

artículo científico publicado en 2004

Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1.

artículo científico publicado en 2007

Towards metagenome-scale models for industrial applications--the case of Lactic Acid Bacteria

artículo científico publicado en 2012

Training for translation between disciplines: a philosophy for life and data sciences curricula.

artículo científico publicado en 2018

Understanding bistability in yeast glycolysis using general properties of metabolic pathways.

artículo científico publicado en 2014

Understanding regulation of metabolism through feasibility analysis.

artículo científico publicado en 2012

Understanding start-up problems in yeast glycolysis

artículo científico publicado en 2018

Understanding the adaptive growth strategy of Lactobacillus plantarum by in silico optimisation

artículo científico publicado en 2009

Understanding the physiology of Lactobacillus plantarum at zero growth

artículo científico publicado en 2010

Using a genome-scale metabolic model of Enterococcus faecalis V583 to assess amino acid uptake and its impact on central metabolism

artículo científico publicado en 2014

Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies

artículo científico publicado en 2022

Yeast cells with a specific cellular make-up and an environment that removes acetaldehyde are prone to sustained glycolytic oscillations

artículo científico publicado en 1994

Lista de obras de Bas Teusink

'Slave' metabolites and enzymes. A rapid way of delineating metabolic control

A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the <i>Saccharomyces</i> Genus in Fermentation

A Specific Mutation in the Promoter Region of the Silent cel Cluster Accounts for the Appearance of Lactose-Utilizing Lactococcus lactis MG1363 ⬇️

A centrifugation-based clearing method allows high-throughput acidification and growth-rate measurements in milk

A critical view of metabolic network adaptations

A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803.

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris

A novel consortium of Lactobacillus rhamnosus and Streptococcus thermophilus for increased access to functional fermented foods

A practical guide to genome-scale metabolic models and their analysis

A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae

A systematic assessment of current genome-scale metabolic reconstruction tools

Accelerating the reconstruction of genome-scale metabolic networks

Acute inhibition of hepatic beta-oxidation in APOE*3Leiden mice does not affect hepatic VLDL secretion or insulin sensitivity

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength

Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model

Apolipoprotein C3 deficiency results in diet-induced obesity and aggravated insulin resistance in mice

Around the growth phase transition S. cerevisiae's make-up favours sustained oscillations of intracellular metabolites

Availability of public goods shapes the evolution of competing metabolic strategies

Bet-hedging during bacterial diauxic shift

Binding proteins enhance specific uptake rate by increasing the substrate-transporter encounter rate

Bioinformatics and systems biology: bridging the gap between heterogeneous student backgrounds

CD36 deficiency increases insulin sensitivity in muscle, but induces insulin resistance in the liver in mice

Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry

Co-regulation of metabolic genes is better explained by flux coupling than by network distance

Community flux balance analysis for microbial consortia at balanced growth

Comparative systems biology: from bacteria to man ⬇️

Compartmentation protects trypanosomes from the dangerous design of glycolysis

Constraint-based stoichiometric modelling from single organisms to microbial communities.

Contribution of fatty acids released from lipolysis of plasma triglycerides to total plasma fatty acid flux and tissue-specific fatty acid uptake.

Control analysis of glycolytic oscillations

Control and regulation of metabolic fluxes in microbes by substrates and enzymes

Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations

Correlation between sequence conservation and the genomic context after gene duplication

Correlation between sequence conservation and the genomic context after gene duplication.

Development of a minimal growth medium for Lactobacillus plantarum

Dynamic elementary mode modelling of non-steady state flux data.

Effect of amino acid availability on vitamin B12 production in Lactobacillus reuteri

Elementary Growth Modes provide a molecular description of cellular self-fabrication

Evolutionary engineering to enhance starter culture performance in food fermentations

Evolutionary pressures on microbial metabolic strategies in the chemostat

Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features

FAME, the Flux Analysis and Modeling Environment

Fatal attraction in glycolysis: how Saccharomyces cerevisiae manages sudden transitions to high glucose.

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

Functional identification in Lactobacillus reuteri of a PocR-like transcription factor regulating glycerol utilization and vitamin B12 synthesis

Further Elucidation of Galactose Utilization in MG1363

Gene network requirements for regulation of metabolic gene expression to a desired state

Genome data mining of lactic acid bacteria: the impact of bioinformatics

Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation

Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria

Genome-scale reconstruction of the Streptococcus pyogenes M49 metabolic network reveals growth requirements and indicates potential drug targets

How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization

Hyperlipidemia in APOE2 transgenic mice is ameliorated by a truncated apoE variant lacking the C-terminal domain.

In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments.

In vivo characterisation of fluorescent proteins in budding yeast

Increased hepatic insulin sensitivity together with decreased hepatic triglyceride stores in hormone-sensitive lipase-deficient mice

Inferring differences in the distribution of reaction rates across conditions

Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models

Intestinal lipid absorption is not affected in CD36 deficient mice

Lactic Acid Bacteria: embarking on 30 more years of research

Leptin deficiency per se dictates body composition and insulin action in ob/ob mice.

Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells

Low affinity uniporter carrier proteins can increase net substrate uptake rate by reducing efflux

MEMOTE for standardized genome-scale metabolic model testing

Maintaining maximal metabolic flux by gene expression control

MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis

Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community

Metabolic models for rational improvement of lactic acid bacteria as cell factories.

Metabolic shifts: a fitness perspective for microbial cell factories

Metabolic states with maximal specific rate carry flux through an elementary flux mode

Metabolism at evolutionary optimal States.

Metabolite Depletion Affects Flux Profiling of Cell Lines

Microbial competition reduces metabolic interaction distances to the low µm-range

Microdroplet screening and selection for improved microbial production of extracellular compounds

Model-based quantification of metabolic interactions from dynamic microbial-community data

Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation

Multi-tasking of biosynthetic and energetic functions of glycolysis explained by supply and demand logic

Optimality principles in the regulation of metabolic networks