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Lista de obras de Joaquín Dopazo

267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation

artículo científico publicado en 2016

A Comprehensive DNA Methylation Profile of Epithelial-to-Mesenchymal Transition

scientific article published on 08 August 2014

A DNA damage repair gene-associated signature predicts responses of patients with advanced soft-tissue sarcoma to treatment with trabectedin

artículo científico publicado en 2021

A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces

artículo científico publicado en 2015

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus

artículo científico publicado en 2015

A RT-PCR assay for the differential diagnosis of vesicular viral diseases of swine

artículo científico publicado en 1998

A SILAC approach to MT1-MMP degradome in inflammatory angiogenesis

A comparison of mechanistic signaling pathway activity analysis methods

artículo científico publicado en 2019

A comprehensive database for integrated analysis of omics data in autoimmune diseases

artículo científico publicado en 2021

A computer program for the design of PCR primers for diagnosis of highly variable genomes.

artículo científico publicado en 1993

A function-centric approach to the biological interpretation of microarray time-series

artículo científico publicado en 2006

A hierarchical unsupervised growing neural network for clustering gene expression patterns

artículo científico publicado en 2001

A large scale survey reveals that chromosomal copy-number alterations significantly affect gene modules involved in cancer initiation and progression.

artículo científico publicado en 2011

A map of human microRNA variation uncovers unexpectedly high levels of variability

artículo científico publicado en 2012

A new overgrowth syndrome is due to mutations in RNF125.

artículo científico publicado en 2014

A new parallel pipeline for DNA methylation analysis of long reads datasets

artículo científico publicado en 2017

A novel candidate region linked to development of both pheochromocytoma and head/neck paraganglioma

article

A parallel and sensitive software tool for methylation analysis on multicore platforms

artículo científico publicado en 2015

A predictor based on the somatic genomic changes of the BRCA1/BRCA2 breast cancer tumors identifies the non-BRCA1/BRCA2 tumors with BRCA1 promoter hypermethylation

article

A procedure for detecting selection in highly variable viral genomes: evidence of positive selection in antigenic regions of capsid protein VP1 of foot-and-mouth disease virus.

artículo científico publicado en 1998

A strain-type clustering of potato virus Y based on the genetic distance between isolates calculated by RFLP analysis of the amplified coat protein gene

artículo científico publicado en 1996

A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways

artículo científico publicado en 2021

A web tool for the design and management of panels of genes for targeted enrichment and massive sequencing for clinical applications.

artículo científico publicado en 2014

A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies

artículo científico publicado en 2014

ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data

artículo científico publicado en 2017

Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity

scientific article published on 16 August 2019

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array

artículo científico publicado en 2014

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models

artículo científico publicado en 2016

An approach to inferring transcriptional regulation among genes from large-scale expression data.

artículo científico publicado en 2003

An evolutionary trade-off between protein turnover rate and protein aggregation favors a higher aggregation propensity in fast degrading proteins

artículo científico publicado en 2011

Analysis of chronic lymphotic leukemia transcriptomic profile: differences between molecular subgroups

artículo científico

Analysis of genetic variability of populations of herpes simplex viruses

artículo científico publicado en 1993

Analysis of normal-tumour tissue interaction in tumours: prediction of prostate cancer features from the molecular profile of adjacent normal cells

artículo científico publicado en 2011

Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate

artículo científico publicado en 2001

Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples

artículo científico publicado en 2019

Assessing differential expression measurements by highly parallel pyrosequencing and DNA microarrays: a comparative study.

artículo científico publicado en 2011

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures

artículo científico publicado en 2014

Assessing the biological significance of gene expression signatures and co-expression modules by studying their network properties

artículo científico publicado en 2011

Assessing the impact of mutations found in next generation sequencing data over human signaling pathways

artículo científico publicado en 2015

Assessment of Targeted Next-Generation Sequencing as a Tool for the Diagnosis of Charcot-Marie-Tooth Disease and Hereditary Motor Neuropathy.

artículo científico publicado en 2016

Association Study of 69 Genes in the Ret Pathway Identifies Low-penetrance Loci in Sporadic Medullary Thyroid Carcinoma

article

Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

scientific article published on 17 July 2020

B2G-FAR, a species-centered GO annotation repository

artículo científico publicado en 2011

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

artículo científico publicado en 2005

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

artículo científico publicado en 2006

BRCA1 Alternative splicing landscape in breast tissue samples.

artículo científico publicado en 2015

Babelomics 5.0: functional interpretation for new generations of genomic data.

artículo científico publicado en 2015

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

artículo científico publicado en 2008

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

artículo científico publicado en 2010

Bioinformatics and cancer: an essential alliance

artículo científico publicado en 2006

Bioinformatics methods for the analysis of expression arrays: data clustering and information extraction

artículo científico publicado en 2002

Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes

artículo científico publicado en 2008

CLEAR-test: combining inference for differential expression and variability in microarray data analysis.

artículo científico publicado en 2007

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

artículo científico publicado en 2020

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

artículo científico

CSVS, a crowdsourcing database of the Spanish population genetic variability

artículo científico publicado en 2020

Capturing the biological impact of CDKN2A and MC1R genes as an early predisposing event in melanoma and non melanoma skin cancer

artículo científico publicado en 2014

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

artículo científico publicado en 2012

Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus

artículo científico publicado en 2009

Chronic subordination stress selectively downregulates the insulin signaling pathway in liver and skeletal muscle but not in adipose tissue of male mice

artículo científico publicado en 2016

Combined genetic and high-throughput strategies for molecular diagnosis of inherited retinal dystrophies.

artículo científico publicado en 2014

Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns

artículo científico publicado en 2002

Comparative gene expression study of the vestibular organ of the Igf1 deficient mouse using whole-transcript arrays

artículo científico publicado en 2015

Comparative study of the genetic variability in thymidine kinase and glycoprotein B genes of herpes simplex viruses by the RNase A mismatch cleavage method.

artículo científico publicado en 1995

Comparing bacterial genomes through conservation profiles.

artículo científico publicado en 2003

Concurrent and Accurate Short Read Mapping on Multicore Processors.

artículo científico publicado en 2015

Controlled ovarian stimulation induces a functional genomic delay of the endometrium with potential clinical implications

artículo científico publicado en 2008

DBAli tools: mining the protein structure space

artículo científico publicado en 2007

DNA methylation epigenotypes in breast cancer molecular subtypes ⬇️

artículo científico publicado en 2010

DNMAD: web-based diagnosis and normalization for microarray data

artículo científico publicado en 2004

Deciphering intrafamilial phenotypic variability by exome sequencing in a Bardet-Biedl family

artículo científico publicado en 2013

Defining the genomic signature of totipotency and pluripotency during early human development

artículo científico publicado en 2013

Deregulation of key signaling pathways involved in oocyte maturation in FMR1 premutation carriers with Fragile X-associated primary ovarian insufficiency.

artículo científico

Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray

artículo científico publicado en 2012

Differential Features Between Chronic Skin Inflammatory Diseases Revealed in Skin-Humanized Psoriasis and Atopic Dermatitis Mouse Models.

artículo científico publicado en 2015

Differential expression in RNA-seq: a matter of depth

artículo científico publicado en 2011

Differential lipid partitioning between adipocytes and tissue macrophages modulates macrophage lipotoxicity and M2/M1 polarization in obese mice ⬇️

artículo científico publicado en 2011

Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models

Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models

artículo científico publicado en 2019

Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp

scholarly article by Leonardo Arbiza published in January 2005

Direct functional assessment of the composite phenotype through multivariate projection strategies

artículo científico publicado en 2008

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information

artículo científico publicado en 2005

Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments

artículo científico publicado en 2012

Discovery and hypothesis generation through bioinformatics

artículo científico publicado en 2006

Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua

artículo científico publicado en 2012

Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection

artículo científico publicado en 2020

Dysfunctional mitochondrial fission impairs cell reprogramming

artículo científico publicado en 2016

ERCC4Associated with Breast Cancer Risk: A Two-Stage Case-Control Study Using High-throughput Genotyping

ETE: a python Environment for Tree Exploration

artículo científico publicado en 2010

Early peroxisome proliferator-activated receptor gamma regulated genes involved in expansion of pancreatic beta cell mass

artículo científico publicado en 2011

Early transcriptional defense responses in Arabidopsis cell suspension culture under high-light conditions.

artículo científico publicado en 2011

Estimates by computer simulation of genetic distances from comparisons of RNAse A mismatch cleavage patterns

article

Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach.

artículo científico publicado en 1994

Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication

artículo científico publicado en 2011

Evidence for systems-level molecular mechanisms of tumorigenesis

artículo científico publicado en 2007

Evolutionary analysis of the picornavirus family

artículo científico publicado en 1995

Evolutionary relationships among bean common mosaic virus strains and closely related potyviruses

artículo científico publicado en 1994

Exome sequencing identifies a new mutation in SERAC1 in a patient with 3-methylglutaconic aciduria

artículo científico publicado en 2013

Exome sequencing reveals a high genetic heterogeneity on familial Hirschsprung disease

artículo científico publicado en 2015

Exome sequencing reveals novel and recurrent mutations with clinical significance in inherited retinal dystrophies

artículo científico publicado en 2014

Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole-genome transcription profiling of Escherichia coli

artículo científico publicado en 2009

Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models

scientific article published on 02 July 2019

Exploring the link between germline and somatic genetic alterations in breast carcinogenesis

artículo científico publicado en 2010

Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions

artículo científico publicado en 2006

Expression and microarrays.

artículo científico publicado en 2008

Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).

artículo científico publicado en 2016

Extensive translatome remodeling during ER stress response in mammalian cells

artículo científico publicado en 2012

FM19G11, a new hypoxia-inducible factor (HIF) modulator, affects stem cell differentiation status.

artículo científico publicado en 2009

Family-based genome-wide association study in Patagonia confirms the association of the DMD locus and cleft lip and palate

artículo científico publicado en 2015

Fast inexact mapping using advanced tree exploration on backward search methods

artículo científico publicado en 2015

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments

artículo científico publicado en 2007

Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains

artículo científico publicado en 2010

Fixation of mutations at the VP1 gene of foot-and-mouth disease virus. Can quasispecies define a transient molecular clock?

artículo científico publicado en 1991

Formulating and testing hypotheses in functional genomics

Fortunella margarita transcriptional reprogramming triggered by Xanthomonas citri subsp. citri

artículo científico publicado en 2011

Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung's disease

artículo científico publicado en 2012

From genes to functional classes in the study of biological systems

artículo científico publicado en 2007

Functional Interpretation of Microarray Experiments

scholarly article by Joaquín Dopazo published in September 2006

Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes

artículo científico publicado en 2010

Functional assessment of time course microarray data

artículo científico publicado en 2009

Functional genomics and networks: new approaches in the extraction of complex gene modules

artículo científico publicado en 2010

Functional genomics of 5- to 8-cell stage human embryos by blastomere single-cell cDNA analysis

artículo científico publicado en 2010

Functional profiling and gene expression analysis of chromosomal copy number alterations

artículo científico publicado en 2007

Functional profiling methods in cancer

artículo científico publicado en 2010

Functional profiling of microarray experiments using text-mining derived bioentities

artículo científico

Functional signatures identified in B-cell non-Hodgkin lymphoma profiles.

artículo científico publicado en 2009

GEPAS, a web-based tool for microarray data analysis and interpretation

artículo científico publicado en 2008

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data

artículo científico publicado en 2005

GEPAS: A web-based resource for microarray gene expression data analysis

artículo científico publicado en 2003

GGPS1 Mutation and Atypical Femoral Fractures with Bisphosphonates.

artículo científico publicado en 2017

Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships

scientific article published on 01 October 2004

Gene Expression Integration into Pathway Modules Reveals a Pan-Cancer Metabolic Landscape

Gene Expression Integration into Pathway Modules Reveals a Pan-Cancer Metabolic Landscape

Gene encoding capsid protein VP1 of foot-and-mouth disease virus: a quasispecies model of molecular evolution

artículo científico publicado en 1988

Gene expression analysis of chromosomal regions with gain or loss of genetic material detected by comparative genomic hybridization

article

Gene expression analysis of the endometrium reveals that controlled ovarian stimulation induces a genomic delay with potential clinical implications

article

Gene expression data preprocessing.

artículo científico publicado en 2003

Gene set internal coherence in the context of functional profiling

artículo científico publicado en 2009

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies

artículo científico publicado en 2009

Gene-expression Profiling And Differential Pathways In The Sensitization And Tolerance To Allergens

article

Genetic characterization of populations of a de novo arisen sugar beet pest, Aubeonymus mariaefranciscae (Coleoptera, Curculionidae), by RAPD analysis

artículo científico publicado en 1997

Genetic evolution and tropism of transmissible gastroenteritis coronaviruses

artículo científico publicado en 1992

Genome Maps, a new generation genome browser

artículo científico publicado en 2013

Genome-scale evidence of the nematode-arthropod clade

artículo científico publicado en 2005

Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data

artículo científico publicado en 2021

Genome-wide analysis of DNA methylation in Hirschsprung enteric precursor cells: unraveling the epigenetic landscape of enteric nervous system development

artículo científico publicado en 2021

Genomic expression differences between cutaneous cells from red hair color individuals and black hair color individuals based on bioinformatic analysis ⬇️

artículo científico publicado en 2016

Genomics and transcriptomics in drug discovery

artículo científico publicado en 2013

Genomics of the origin and evolution of Citrus.

artículo científico publicado en 2018

Global Transcriptome Analysis of Primary Cerebrocortical Cells: Identification of Genes Regulated by Triiodothyronine in Specific Cell Types.

artículo científico publicado en 2015

Grape antioxidant dietary fiber inhibits intestinal polyposis in ApcMin/+ mice: relation to cell cycle and immune response.

artículo científico publicado en 2013

Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes.

artículo científico publicado en 2017

HCAD, closing the gap between breakpoints and genes

artículo científico publicado en 2005

HGVA: the Human Genome Variation Archive

artículo científico publicado en 2017

HPG pore: an efficient and scalable framework for nanopore sequencing data.

artículo científico publicado en 2016

High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes.

artículo científico publicado en 2016

High-throughput functional annotation and data mining with the Blast2GO suite

artículo científico publicado en 2008

Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences

artículo científico publicado en 2021

Highly specific and accurate selection of siRNAs for high-throughput functional assays

artículo científico publicado en 2004

Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium

artículo científico publicado en 2010

IL1β induces mesenchymal stem cells migration and leucocyte chemotaxis through NF-κB.

artículo científico publicado en 2012

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

artículo científico publicado en 2007

Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas

artículo científico publicado en 2015

Identification of genes involved in resistance to interferon-alpha in cutaneous T-cell lymphoma

artículo científico publicado en 2002

Identification of overexpressed genes in frequently gained/amplified chromosome regions in multiple myeloma

artículo científico publicado en 2006

Immune Cell Associations with Cancer Risk

artículo científico publicado en 2020

Immunogenicity of non-structural proteins of foot-and-mouth disease virus: differences between infected and vaccinated swine

artículo científico publicado en 1994

Improved Class Prediction in DNA Microarray Gene Expression Data by Unsupervised Reduction of the Dimensionality followed by Supervised Learning with a Perceptron

article

Improving the management of Inherited Retinal Dystrophies by targeted sequencing of a population-specific gene panel

artículo científico publicado en 2016

Inferring the functional effect of gene expression changes in signaling pathways.

artículo científico publicado en 2013

Inferring the regulatory network behind a gene expression experiment.

artículo científico publicado en 2012

Initial genomics of the human nucleolus

artículo científico publicado en 2010

Integrated gene set analysis for microRNA studies.

artículo científico publicado en 2016

Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower

artículo científico

Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.).

artículo científico publicado en 2017

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

artículo científico publicado en 2008

Intrauterine growth restriction is associated with cardiac ultrastructural and gene expression changes related to the energetic metabolism in a rabbit model

article

Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation.

artículo científico publicado en 2015

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases

artículo científico publicado en 2007

Large deletions in the 5'-untranslated region of foot-and-mouth disease virus of serotype C.

artículo científico publicado en 1995

Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells

artículo científico publicado en 2011

Mammosphere formation in breast carcinoma cell lines depends upon expression of E-cadherin

artículo científico publicado en 2013

Maslinic acid-enriched diet decreases intestinal tumorigenesis in Apc(Min/+) mice through transcriptomic and metabolomic reprogramming

artículo científico publicado en 2013

Mechanistic Models of Signaling Pathways Reveal the Drug Action Mechanisms behind Gender-Specific Gene Expression for Cancer Treatments

artículo científico publicado en 2020

Mechanistic modeling of the SARS-CoV-2 disease map

scientific article published on 13 April 2020

Mechanistic models of signaling pathways deconvolute the glioblastoma single-cell functional landscape

artículo científico publicado en 2020

Microarray Data Processing and Analysis

Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome

artículo científico publicado en 2018

Molecular characterization of human immunodeficiency virus type 1 isolates from Venezuela.

artículo científico publicado en 1995

Molecular epidemiology of HIV-1 in Madrid.

artículo científico publicado en 1994

Molecular profiling related to poor prognosis in thyroid carcinoma. Combining gene expression data and biological information

artículo científico publicado en 2007

Monte Carlo simulation in phylogenies: An application to test the constancy of evolutionary rates

scientific article published on 01 March 1994

Multicore and Cloud-Based Solutions for Genomic Variant Analysis

Multidimensional gene set analysis of genomic data

artículo científico publicado en 2010

Mutation screening of multiple genes in Spanish patients with autosomal recessive retinitis pigmentosa by targeted resequencing

artículo científico publicado en 2011

Mutation spectrum of EYS in Spanish patients with autosomal recessive retinitis pigmentosa

artículo científico publicado en 2010

Mutations in TRAPPC11 are associated with a congenital disorder of glycosylation

scientific journal article

Mutations in the MORC2 gene cause axonal Charcot-Marie-Tooth disease.

artículo científico publicado en 2015

Natural selection on functional modules, a genome-wide analysis

artículo científico publicado en 2011

New challenges in gene expression data analysis and the extended GEPAS

artículo científico publicado en 2004

New susceptibility loci for severe COVID-19 by detailed GWAS analysis in European populations

artículo científico

Nivolumab and sunitinib combination in advanced soft tissue sarcomas: a multicenter, single-arm, phase Ib/II trial

artículo científico publicado en 2020

Novel RP1 mutations and a recurrent BBS1 variant explain the co-existence of two distinct retinal phenotypes in the same pedigree

artículo científico publicado en 2014

Novel genes detected by transcriptional profiling from whole-blood cells in patients with early onset of acute coronary syndrome

artículo científico publicado en 2013

Ontology-driven approaches to analyzing data in functional genomics

artículo científico publicado en 2006

Optimised molecular genetic diagnostics of Fanconi anaemia by whole exome sequencing and functional studies

scientific article published on 05 October 2019

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

artículo científico publicado en 2014

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

artículo científico publicado en 2010

Parallel implementation of DNAml program on message-passing architectures

article by C Ceron et al published June 1998 in Parallel Computing

Pathway network inference from gene expression data

artículo científico publicado en 2014

Pathways systematically associated to Hirschsprung's disease

artículo científico publicado en 2013

Pazopanib for treatment of advanced malignant and dedifferentiated solitary fibrous tumour: a multicentre, single-arm, phase 2 trial

scientific article published on 18 December 2018

Pazopanib for treatment of typical solitary fibrous tumours: a multicentre, single-arm, phase 2 trial

artículo científico publicado en 2020

Permanent cardiac sarcomere changes in a rabbit model of intrauterine growth restriction

artículo científico publicado en 2014

Phenotypic characterization of BRCA1 and BRCA2 tumors based in a tissue microarray study with 37 immunohistochemical markers

artículo científico publicado en 2005

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

artículo científico publicado en 2011

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

artículo científico publicado en 2007

Phylogenetic Reconstruction Using an Unsupervised Growing Neural Network That Adopts the Topology of a Phylogenetic Tree

artículo científico publicado en 1997

Phylogenetic relationships of european strains of porcine reproductive and respiratory syndrome virus (PRRSV) inferred from DNA sequences of putative ORF-5 and ORF-7 genes

artículo científico publicado en 1996

Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species

artículo científico publicado en 2004

Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA

artículo científico publicado en 1991

PhylomeDB: a database for genome-wide collections of gene phylogenies

artículo científico publicado en 2008

Plastome genomics in South American maize landraces: chloroplast lineages parallel the geographical structuring of nuclear gene pools

artículo científico publicado en 2021

Platform to study intracellular polystyrene nanoplastic pollution and clinical outcomes

artículo científico publicado en 2020

Point mutant frequencies in the pol gene of human immunodeficiency virus type 1 are two- to threefold lower than those of env.

artículo científico publicado en 1996

Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome

artículo científico publicado en 2006

Precision medicine needs pioneering clinical bioinformaticians.

artículo científico publicado en 2017

Primary genetic characterization of HIV-1 isolates from WHO-sponsored vaccine evaluation sites by the RNase-A mismatch method.

artículo científico publicado en 1995

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

artículo científico publicado en 2011

Progress in pharmacogenetics: consortiums and new strategies

artículo científico publicado en 2016

Prophet, a web-based tool for class prediction using microarray data.

artículo científico publicado en 2006

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level.

artículo científico publicado en 2004

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

artículo científico publicado en 2006

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

artículo científico publicado en 2005

PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources

scientific article published on 28 March 2019

Qualimap: evaluating next-generation sequencing alignment data.

artículo científico publicado en 2012

Quantitative characterization of antigens using monoclonal antibody reactivities

artículo científico publicado en 1993

Re-evaluation casts doubt on the pathogenicity of homozygous USH2A p.C759F

artículo científico publicado en 2015

Reducing the effect of the data order in algorithms for constructing phylogenetic trees

artículo científico publicado en 1988

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise

artículo científico publicado en 2017

Role of CPI-17 in restoring skin homoeostasis in cutaneous field of cancerization: effects of topical application of a film-forming medical device containing photolyase and UV filters

artículo científico publicado en 2013

SMN1 copy-number and sequence variant analysis from next-generation sequencing data

artículo científico publicado en 2020

SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks

artículo científico publicado en 2009

SNP and haplotype mapping for genetic analysis in the rat.

artículo científico publicado en 2008

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants

artículo científico publicado en 2011

Screening of CD96 and ASXL1 in 11 patients with Opitz C or Bohring-Opitz syndromes.

artículo científico publicado en 2015

Select your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs

artículo científico publicado en 2012

Selection upon genome architecture: conservation of functional neighborhoods with changing genes

artículo científico publicado en 2010

Selective Pressures at a Codon-level Predict Deleterious Mutations in Human Disease Genes

article

Self-organizing tree growing network for classifying amino acids.

artículo científico publicado en 1998

Sequence analysis of HIV-1 vif gene in Spanish isolates.

artículo científico publicado en 1995

Sequences of isopenicillin N synthetase genes suggest horizontal gene transfer from prokaryotes to eukaryotes

article

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia.

artículo científico

Serial Expression Analysis: a web tool for the analysis of serial gene expression data

artículo científico publicado en 2010

Serum metabolomic profiling facilitates the non-invasive identification of metabolic biomarkers associated with the onset and progression of non-small cell lung cancer

artículo científico publicado en 2016

Signaling Pathway Activities Improve Prognosis for Breast Cancer

Split decomposition: a technique to analyze viral evolution

artículo científico publicado en 1993

Stress-induced activation of brown adipose tissue prevents obesity in conditions of low adaptive thermogenesis

artículo científico publicado en 2015

Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons

artículo científico publicado en 2002

Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism

artículo científico publicado en 2021

The Activation of the Sox2 RR2 Pluripotency Transcriptional Reporter in Human Breast Cancer Cell Lines is Dynamic and Labels Cells with Higher Tumorigenic Potential

artículo científico publicado en 2014

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

artículo científico publicado en 2007

The CD36, CLA-1 (CD36L1), and LIMPII (CD36L2) gene family: cellular distribution, chromosomal location, and genetic evolution

artículo científico publicado en 1995

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research

scientific article published on 13 October 2020

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

artículo científico publicado en 2010

The Mutational Landscape of Acute Promyelocytic Leukemia Reveals an Interacting Network of Co-Occurrences and Recurrent Mutations

artículo científico publicado en 2016

The effects of death and post-mortem cold ischemia on human tissue transcriptomes.

artículo científico publicado en 2018

The first complete genomic structure of Butyrivibrio fibrisolvens and its chromid

artículo científico publicado en 2018

The human phylome

artículo científico publicado en 2007

The modular network structure of the mutational landscape of Acute Myeloid Leukemia

artículo científico publicado en 2018

The pan-cancer pathological regulatory landscape

artículo científico publicado en 2016

The protease MT1-MMP drives a combinatorial proteolytic program in activated endothelial cells

artículo científico publicado en 2012

The role of the interactome in the maintenance of deleterious variability in human populations

artículo científico publicado en 2014

The transcriptomics of an experimentally evolved plant-virus interaction.

artículo científico publicado en 2016

Therapeutic targets for olive pollen allergy defined by gene markers modulated by Ole e 1-derived peptides

artículo científico publicado en 2014

Transcriptomic Analysis of a Diabetic Skin-Humanized Mouse Model Dissects Molecular Pathways Underlying the Delayed Wound Healing Response

artículo científico publicado en 2020

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis

artículo científico publicado en 2012

Two novel mutations in the BCKDK (branched-chain keto-acid dehydrogenase kinase) gene are responsible for a neurobehavioral deficit in two pediatric unrelated patients

artículo científico publicado en 2014

Understanding disease mechanisms with models of signaling pathway activities.

artículo científico publicado en 2014

Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans

artículo científico publicado en 2008

Using Papers Citations for Selecting the Best Genomic Databases

article published in 2011

Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity

artículo científico publicado en 2015

Using gene ontology on genome-scale studies to find significant associations of biologically relevant terms to groups of genes

article

Using mechanistic models for the clinical interpretation of complex genomic variation

artículo científico publicado en 2019

VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing

artículo científico publicado en 2012

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.

artículo científico publicado en 2017

Variable selection for multifactorial genomic data

Web-based network analysis and visualization using CellMaps

artículo científico publicado en 2016

Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes

artículo científico publicado en 2017

Whole exome sequencing of Rett syndrome-like patients reveals the mutational diversity of the clinical phenotype

artículo científico publicado en 2016

Whole-exome sequencing identifies novel compound heterozygous mutations in USH2A in Spanish patients with autosomal recessive retinitis pigmentosa

artículo científico publicado en 2013

Whole-exome sequencing reveals ZNF408 as a new gene associated with autosomal recessive retinitis pigmentosa with vitreal alterations

artículo científico publicado en 2015

Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient

artículo científico publicado en 2012

[Impact assessment on data protection in research projects]

scientific article published on 21 January 2020

myKaryoView: a light-weight client for visualization of genomic data

artículo científico publicado en 2011

ngsCAT: a tool to assess the efficiency of targeted enrichment sequencing.

artículo científico publicado en 2014

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