Lista de obras -

A blockchain-enabled sharing platform for personal health records

scientific article published in 2023

A ground truth based comparative study on clustering of gene expression data.

artículo científico publicado en 2008

AISAIC: a software suite for accurate identification of significant aberrations in cancers

artículo científico publicado en 2013

Antiestrogen Resistance and the Application of Systems Biology

artículo científico publicado en 2012

Antiestrogen resistance in breast cancer and the role of estrogen receptor signaling.

artículo científico publicado en 2003

Association of interferon regulatory factor-1, nucleophosmin, nuclear factor-kappaB, and cyclic AMP response element binding with acquired resistance to Faslodex (ICI 182,780).

artículo científico publicado en 2002

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor

artículo científico publicado en 2015

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.

artículo científico publicado en 2015

Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.

artículo científico publicado en 2016

Biomarker identification by knowledge-driven multilevel ICA and motif analysis.

artículo científico publicado en 2009

ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles.

artículo científico publicado en 2015

Cross phenotype normalization of microarray data

artículo científico publicado en 2010

DDN: a caBIG® analytical tool for differential network analysis

artículo científico publicado en 2011

Data-driven detection of subtype-specific differentially expressed genes

artículo científico publicado en 2021

Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells

artículo científico publicado en 2011

Effects of In Utero Exposure to Ethinyl Estradiol on Tamoxifen Resistance and Breast Cancer Recurrence in a Preclinical Model.

artículo científico publicado en 2016

Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer

artículo científico publicado en 2011

Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate.

artículo científico publicado en 2012

Estrogen receptor alpha positive breast tumors and breast cancer cell lines share similarities in their transcriptome data structures.

artículo científico publicado en 2006

G-DOC: a systems medicine platform for personalized oncology

artículo científico publicado en 2011

GIST: a Gibbs sampler to identify intracellular signal transduction pathways

artículo científico publicado en 2011

Gene module identification from microarray data using nonnegative independent component analysis

artículo científico publicado en 2007

Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells

artículo científico publicado en 2009

Gene selection for multiclass prediction by weighted Fisher criterion

artículo científico publicado en 2007

Gene signaling pathways mediating the opposite effects of prepubertal low-fat and high-fat n-3 polyunsaturated fatty acid diets on mammary cancer risk.

artículo científico publicado en 2008

Genome-wide identification of significant aberrations in cancer genome.

artículo científico publicado en 2012

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.

artículo científico publicado en 2009

Identifying cancer biomarkers by network-constrained support vector machines

artículo científico publicado en 2011

Identifying protein interaction subnetworks by a bagging Markov random field-based method.

artículo científico publicado en 2012

Inferring network interactions using recurrent neural networks and swarm intelligence

artículo científico publicado en 2006

Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses

artículo científico publicado en 2014

Iterative normalization of cDNA microarray data.

artículo científico publicado en 2002

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring

artículo científico publicado en 2014

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks ⬇️

artículo científico publicado en 2014

Knowledge-guided gene ranking by coordinative component analysis

artículo científico publicado en 2010

Latent variable and nICA modeling of pathway gene module composite.

artículo científico publicado en 2006

Mathematical modelling of transcriptional heterogeneity identifies novel markers and subpopulations in complex tissues

artículo científico publicado en 2016

Motif-directed network component analysis for regulatory network inference

artículo científico publicado en 2008

Multilevel support vector regression analysis to identify condition-specific regulatory networks

artículo científico publicado en 2010

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.

artículo científico publicado en 2006

Radiogenomic signatures reveal multiscale intratumour heterogeneity associated with biological functions and survival in breast cancer

scientific article published on 25 September 2020

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic

artículo científico publicado en 2014

Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers

scientific article published on 01 June 2019

The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.

artículo científico publicado en 2008

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.

artículo científico publicado en 2014

Unsupervised deconvolution of dynamic imaging reveals intratumor vascular heterogeneity and repopulation dynamics

artículo científico publicado en 2014

caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data

artículo científico publicado en 2008

Lista de obras de

A blockchain-enabled sharing platform for personal health records

A ground truth based comparative study on clustering of gene expression data.

AISAIC: a software suite for accurate identification of significant aberrations in cancers

Antiestrogen Resistance and the Application of Systems Biology

Antiestrogen resistance in breast cancer and the role of estrogen receptor signaling.

Association of interferon regulatory factor-1, nucleophosmin, nuclear factor-kappaB, and cyclic AMP response element binding with acquired resistance to Faslodex (ICI 182,780).

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.

Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.

Biomarker identification by knowledge-driven multilevel ICA and motif analysis.

ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles.

Cross phenotype normalization of microarray data

DDN: a caBIG® analytical tool for differential network analysis

Data-driven detection of subtype-specific differentially expressed genes

Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells

Effects of In Utero Exposure to Ethinyl Estradiol on Tamoxifen Resistance and Breast Cancer Recurrence in a Preclinical Model.

Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer

Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate.

Estrogen receptor alpha positive breast tumors and breast cancer cell lines share similarities in their transcriptome data structures.

G-DOC: a systems medicine platform for personalized oncology

GIST: a Gibbs sampler to identify intracellular signal transduction pathways

Gene module identification from microarray data using nonnegative independent component analysis

Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells

Gene selection for multiclass prediction by weighted Fisher criterion

Gene signaling pathways mediating the opposite effects of prepubertal low-fat and high-fat n-3 polyunsaturated fatty acid diets on mammary cancer risk.

Genome-wide identification of significant aberrations in cancer genome.

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.

Identifying cancer biomarkers by network-constrained support vector machines

Identifying protein interaction subnetworks by a bagging Markov random field-based method.

Inferring network interactions using recurrent neural networks and swarm intelligence

Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses

Iterative normalization of cDNA microarray data.

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks ⬇️

Knowledge-guided gene ranking by coordinative component analysis

Latent variable and nICA modeling of pathway gene module composite.

Mathematical modelling of transcriptional heterogeneity identifies novel markers and subpopulations in complex tissues

Motif-directed network component analysis for regulatory network inference

Multilevel support vector regression analysis to identify condition-specific regulatory networks

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.

Radiogenomic signatures reveal multiscale intratumour heterogeneity associated with biological functions and survival in breast cancer

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic

Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers

The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.

Unsupervised deconvolution of dynamic imaging reveals intratumor vascular heterogeneity and repopulation dynamics

caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data