Lista de obras -

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

artículo científico publicado en 2006

Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat.

artículo científico publicado en 2004

Aligning multiple whole genomes with Mercator and MAVID.

artículo científico publicado en 2007

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

artículo científico publicado en 2007

Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability

artículo científico publicado en 2016

Annotating cell types in human single-cell RNA-seq data with CellO

artículo científico

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

artículo científico publicado en 2010

Bicaudal-C spatially controls translation of vertebrate maternal mRNAs

artículo científico publicado en 2013

Cell type specific gene expression profiling reveals a role for complement component C3 in neutrophil responses to tissue damage

scientific article published on 24 September 2020

CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology ⬇️

artículo científico publicado en 2021

Cis-regulatory mechanisms governing stem and progenitor cell transitions

artículo científico publicado en 2015

Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

artículo científico publicado en 2013

Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns

artículo científico publicado en 2006

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

artículo científico publicado en 2013

Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data

artículo científico publicado en 2011

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

artículo científico publicado en 2007

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

artículo científico publicado en 2015

Evaluation of de novo transcriptome assemblies from RNA-Seq data

artículo científico publicado en 2014

Evolution at the nucleotide level: the problem of multiple whole-genome alignment

artículo científico publicado en 2006

Fast statistical alignment

artículo científico publicado en 2009

Fine-scale phylogenetic discordance across the house mouse genome

artículo científico publicado en 2009

GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia

artículo científico publicado en 2017

Gata2 cis-element is required for hematopoietic stem cell generation in the mammalian embryo

artículo científico publicado en 2013

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

artículo científico publicado en 2004

Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase

scientific article published on 10 April 2019

Genomic variation in natural populations of Drosophila melanogaster

artículo científico publicado en 2012

Giant Island Mice Exhibit Widespread Gene Expression Changes in Key Metabolic Organs

artículo científico publicado en 2020

Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome

artículo científico publicado en 2015

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

artículo científico publicado en 2007

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs

artículo científico publicado en 2013

Initial sequencing and comparative analysis of the mouse genome

artículo científico publicado en 2002

Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq

artículo científico publicado en 2016

Mechanism governing heme synthesis reveals a GATA factor/heme circuit that controls differentiation

artículo científico publicado en 2015

PLK1 and NOTCH Positively Correlate in Melanoma and their Combined Inhibition Results in Synergistic Modulations of Key Melanoma Pathways

scientific article published on 11 November 2020

PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

scientific article published on 21 September 2020

Parametric alignment of Drosophila genomes

artículo científico publicado en 2006

Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.

artículo científico publicado en 2015

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

artículo científico publicado en 2007

Positional orthology: putting genomic evolutionary relationships into context ⬇️

artículo científico publicado el 24 de junio de 2011

RNA-Seq gene expression estimation with read mapping uncertainty

artículo científico publicado en 2009

RNA-regulatory exosome complex confers cellular survival to promote erythropoiesis

artículo científico publicado en 2021

Rbm20 regulates titin alternative splicing as a splicing repressor

artículo científico publicado en 2013

Sequence Surveyor: leveraging overview for scalable genomic alignment visualization

artículo científico publicado en 2011

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

artículo científico publicado en 2004

Whole-Genome Alignment

scientific article published on 01 January 2019

Whole-genome alignment

artículo científico

Lista de obras de

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat.

Aligning multiple whole genomes with Mercator and MAVID.

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability

Annotating cell types in human single-cell RNA-seq data with CellO

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

Bicaudal-C spatially controls translation of vertebrate maternal mRNAs

Cell type specific gene expression profiling reveals a role for complement component C3 in neutrophil responses to tissue damage

CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology ⬇️

Cis-regulatory mechanisms governing stem and progenitor cell transitions

Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments

Evaluation of de novo transcriptome assemblies from RNA-Seq data

Evolution at the nucleotide level: the problem of multiple whole-genome alignment

Fast statistical alignment

Fine-scale phylogenetic discordance across the house mouse genome

GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia

Gata2 cis-element is required for hematopoietic stem cell generation in the mammalian embryo

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase

Genomic variation in natural populations of Drosophila melanogaster

Giant Island Mice Exhibit Widespread Gene Expression Changes in Key Metabolic Organs

Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs

Initial sequencing and comparative analysis of the mouse genome

Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq

Mechanism governing heme synthesis reveals a GATA factor/heme circuit that controls differentiation

PLK1 and NOTCH Positively Correlate in Melanoma and their Combined Inhibition Results in Synergistic Modulations of Key Melanoma Pathways

PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments

Parametric alignment of Drosophila genomes

Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

Positional orthology: putting genomic evolutionary relationships into context ⬇️

RNA-Seq gene expression estimation with read mapping uncertainty

RNA-regulatory exosome complex confers cellular survival to promote erythropoiesis

Rbm20 regulates titin alternative splicing as a splicing repressor

Sequence Surveyor: leveraging overview for scalable genomic alignment visualization

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Whole-Genome Alignment

Whole-genome alignment