Lista de obras -

A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B).

artículo científico publicado en 2018

A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants

artículo científico publicado en 2016

A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model.

artículo científico publicado en 2018

ALLMAPS: robust scaffold ordering based on multiple maps.

artículo científico publicado en 2015

Ancient eudicot hexaploidy meets ancestral eurosid gene order.

artículo científico publicado en 2013

Arabidopsis intragenomic conserved noncoding sequence

artículo científico publicado en 2007

Architecture and evolution of a minute plant genome.

artículo científico publicado en 2013

Author Correction: Origin and evolution of the octoploid strawberry genome

artículo científico publicado en 2019

Chickspress: a resource for chicken gene expression.

artículo científico publicado en 2019

CoGe LoadExp+: A web-based suite that integrates next-gen sequencing data analysis workflows and visualization

scholarly article published 21 March 2017

CoGe LoadExp+: A web-based suite that integrates next-generation sequencing data analysis workflows and visualization

scientific article published on 20 July 2017

Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.

artículo científico publicado en 2014

EPIC-CoGe: Managing and Analyzing Genomic Data

artículo científico publicado en 2018

Early History of the Angiosperms

artículo científico publicado en 2014

Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

scholarly article published in Nature Biotechnology

Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs

artículo científico publicado en 2017

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

artículo científico publicado en 2008

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

artículo científico publicado en 2010

FractBias: a graphical tool for assessing fractionation bias following polyploidy.

artículo científico publicado en 2016

G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis

artículo científico publicado en 2007

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants

artículo científico publicado en 2014

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)

artículo científico publicado en 2014

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

artículo científico publicado en 2013

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

artículo científico publicado en 2017

Genome-wide analysis of syntenic gene deletion in the grasses

artículo científico publicado en 2012

How to usefully compare homologous plant genes and chromosomes as DNA sequences

artículo científico publicado en 2008

Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates

artículo científico publicado en 2015

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

artículo científico publicado en 2016

Long identical multispecies elements in plant and animal genomes

artículo científico publicado en 2012

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

artículo científico publicado en 2008

N-Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis

artículo científico publicado en 2018

Novel temporal, fine‐scale and growth variation phenotypes in roots of adult‐stage maize (Zea mays L.) in response to low nitrogen stress ⬇️

artículo científico publicado el 12 de septiembre de 2011

Optical mapping in plant comparative genomics

artículo científico publicado en 2015

Origin and evolution of the octoploid strawberry genome

artículo científico publicado en 2019

Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived

artículo científico publicado en 2018

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

artículo científico publicado en 2017

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

artículo científico publicado en 2014

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.

artículo científico publicado en 2018

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data

artículo científico publicado en 2019

Screening synteny blocks in pairwise genome comparisons through integer programming

artículo científico publicado en 2011

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

artículo científico publicado en 2015

SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand

artículo científico publicado en 2015

SynMap2 & SynMap3D: Web-based whole-genome synteny browsers

artículo científico publicado en 2017

Tail Wags the Dog? Functional Gene Classes Driving Genome-Wide GC Content in Plasmodium spp

article

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

artículo científico publicado en 2011

The Sorghum bicolor genome and the diversification of grasses

artículo científico publicado en 2009

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

artículo científico publicado en 2012

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

artículo científico publicado en 2008

The dynamics of functional classes of plant genes in rediploidized ancient polyploids

artículo científico publicado en 2013

The genome of black raspberry (Rubus occidentalis).

artículo científico publicado en 2016

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

artículo científico publicado en 2016

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

artículo científico publicado en 2011

The pineapple genome and the evolution of CAM photosynthesis

artículo científico publicado en 2015

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

artículo científico publicado en 2014

Unleashing the genome of brassica rapa

artículo científico publicado en 2012

Using Genomic Sequencing for Classical Genetics in E. coli K12 ⬇️

artículo científico publicado el 25 de febrero de 2011

Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family

artículo científico publicado en 2013

Wild tobacco genomes reveal the evolution of nicotine biosynthesis ⬇️

artículo científico publicado en 2017

Lista de obras de

A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B).

A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants

A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model.

ALLMAPS: robust scaffold ordering based on multiple maps.

Ancient eudicot hexaploidy meets ancestral eurosid gene order.

Arabidopsis intragenomic conserved noncoding sequence

Architecture and evolution of a minute plant genome.

Author Correction: Origin and evolution of the octoploid strawberry genome

Chickspress: a resource for chicken gene expression.

CoGe LoadExp+: A web-based suite that integrates next-gen sequencing data analysis workflows and visualization

CoGe LoadExp+: A web-based suite that integrates next-generation sequencing data analysis workflows and visualization

Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.

EPIC-CoGe: Managing and Analyzing Genomic Data

Early History of the Angiosperms

Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.

FractBias: a graphical tool for assessing fractionation bias following polyploidy.

G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

Genome-wide analysis of syntenic gene deletion in the grasses

How to usefully compare homologous plant genes and chromosomes as DNA sequences

Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

Long identical multispecies elements in plant and animal genomes

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

N-Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis

Novel temporal, fine‐scale and growth variation phenotypes in roots of adult‐stage maize (Zea mays L.) in response to low nitrogen stress ⬇️

Optical mapping in plant comparative genomics

Origin and evolution of the octoploid strawberry genome

Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data

Screening synteny blocks in pairwise genome comparisons through integer programming

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum

SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand

SynMap2 & SynMap3D: Web-based whole-genome synteny browsers

Tail Wags the Dog? Functional Gene Classes Driving Genome-Wide GC Content in Plasmodium spp

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

The Sorghum bicolor genome and the diversification of grasses

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

The dynamics of functional classes of plant genes in rediploidized ancient polyploids

The genome of black raspberry (Rubus occidentalis).

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

The pineapple genome and the evolution of CAM photosynthesis

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Unleashing the genome of brassica rapa

Using Genomic Sequencing for Classical Genetics in E. coli K12 ⬇️

Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family

Wild tobacco genomes reveal the evolution of nicotine biosynthesis ⬇️