Lista de obras -

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

artículo científico publicado en 2004

A common 'aggregation-prone' interface possibly participates in the self-assembly of human zona pellucida proteins.

artículo científico publicado en 2016

A consensus method for the prediction of 'aggregation-prone' peptides in globular proteins

artículo científico publicado en 2013

A database for G proteins and their interaction with GPCRs

artículo científico publicado en 2004

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models

artículo científico publicado en 2005

A possible structural model of members of the CPF family of cuticular proteins implicating binding to components other than chitin.

artículo científico publicado en 2010

A structural model of the chitin-binding domain of cuticle proteins

artículo científico publicado en 2002

A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils.

artículo científico publicado en 2016

ANTISOMA: A Computational Pipeline for the Reduction of the Aggregation Propensity of Monoclonal Antibodies

artículo científico publicado en 2020

Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species

artículo científico publicado en 2015

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

artículo científico publicado en 2006

Amyloid fibril formation propensity is inherent into the hexapeptide tandemly repeating sequence of the central domain of silkmoth chorion proteins of the A-family

artículo científico publicado en 2006

An N-terminal pro-atrial natriuretic peptide (NT-proANP) 'aggregation-prone' segment involved in isolated atrial amyloidosis.

artículo científico publicado en 2013

An amyloidogenic determinant in N-terminal pro-brain natriuretic peptide (NT-proBNP): Implications for cardiac amyloidoses

artículo científico publicado en 2011

Analysis of Molecular Recognition Features (MoRFs) in membrane proteins

artículo científico publicado en 2013

Analysis of Single-Nucleotide Polymorphisms in Human Voltage-Gated Ion Channels

scientific article published on 01 April 2019

Chameleon 'aggregation-prone' segments of apoA-I: A model of amyloid fibrils formed in apoA-I amyloidosis

artículo científico publicado en 2015

Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex

artículo científico publicado en 2014

Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins

artículo científico publicado en 2007

CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models

artículo científico publicado en 2014

Cytokine gene polymorphisms in periodontal disease: a meta-analysis of 53 studies including 4178 cases and 4590 controls

artículo científico publicado en 2008

Dogfish egg case structural studies by ATR FT-IR and FT-Raman spectroscopy

artículo científico publicado en 2007

Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences

artículo científico publicado en 2007

Evaluation of annotation strategies using an entire genome sequence

artículo científico publicado en 2003

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

artículo científico publicado en 2005

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

article

Exploring Amyloidogenicity of Clusterin: A Structural and Bioinformatics Analysis.

artículo científico publicado en 2017

Exploring the 'aggregation-prone' core of human Cystatin C: A structural study

artículo científico publicado en 2015

FT-Raman spectroscopy as diagnostic tool of Congo red binding to amyloids

artículo científico publicado en 2003

Fcgamma receptor polymorphisms and their association with periodontal disease: a meta-analysis

artículo científico publicado en 2010

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques

artículo científico publicado en 2010

GeneViTo: visualizing gene-product functional and structural features in genomic datasets

artículo científico publicado en 2003

GprotPRED: Annotation of Gα, Gβ and Gγ subunits of G-proteins using profile Hidden Markov Models (pHMMs) and application to proteomes

artículo científico publicado en 2016

HMMpTM: improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction

artículo científico publicado en 2013

Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs.

artículo científico publicado en 2007

How many 3D structures do we need to train a predictor?

artículo científico publicado en 2009

Identification of a novel 'aggregation-prone'/'amyloidogenic determinant' peptide in the sequence of the highly amyloidogenic human calcitonin

artículo científico publicado en 2013

Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: A critical review and analysis of interacting surfaces, conformational shifts, structural diversity and electrostatic potentials ⬇️

artículo científico publicado el 21 de marzo de 2013

Intrinsic aggregation propensity of the CsgB nucleator protein is crucial for curli fiber formation.

artículo científico publicado en 2016

MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models.

artículo científico publicado en 2016

Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics.

scientific article published on 16 June 2013

Methylene tetrahydrofolate reductase gene polymorphisms and their association with methotrexate toxicity: a meta-analysis

artículo científico

Mining databases for protein aggregation: a review

artículo científico

Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions.

artículo científico publicado en 2016

No evidence for association of CTLA-4 gene polymorphisms with the risk of developing multiple sclerosis: a meta-analysis

article

OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria

artículo científico publicado en 2011

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

artículo científico publicado en 2004

Phoenix 100 versus Vitek 2 in the identification of gram-positive and gram-negative bacteria: a comprehensive meta-analysis

artículo científico publicado en 2011

PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization

artículo científico publicado en 2006

Predicting Alpha Helical Transmembrane Proteins Using HMMs.

artículo científico publicado en 2017

Predicting Beta Barrel Transmembrane Proteins Using HMMs

artículo científico publicado en 2017

Prediction of cell wall sorting signals in gram-positive bacteria with a hidden markov model: application to complete genomes

artículo científico publicado en 2008

Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model

artículo científico publicado en 2008

Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks

artículo científico publicado en 2005

Structural analysis of peptide-analogues of human Zona Pellucida ZP1 protein with amyloidogenic properties: insights into mammalian Zona Pellucida formation

artículo científico publicado en 2013

Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1)

scientific article published on 12 December 2018

Structural studies and cytotoxicity assays of "aggregation-prone" IAPP(8-16) and its non-amyloidogenic variants suggest its important role in fibrillogenesis and cytotoxicity of human amylin

artículo científico publicado en 2015

Structural studies of "aggregation-prone" peptide-analogues of teleostean egg chorion ZPB proteins

artículo científico publicado en 2014

TMRPres2D: high quality visual representation of transmembrane protein models

artículo científico publicado en 2004

The GNB3 C825T polymorphism and essential hypertension: a meta-analysis of 34 studies including 14,094 cases and 17,760 controls

artículo científico publicado en 2007

The amyloid interactome: Exploring protein aggregation

scientific article published on March 2017

The gram-negative outer membrane modeler: Automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields

scientific article published on 19 March 2019

The human plasma membrane peripherome: visualization and analysis of interactions.

artículo científico publicado en 2014

The pentapeptide LQVVR plays a pivotal role in human cystatin C fibrillization

artículo científico publicado en 2015

The silkmoth eggshell as a natural amyloid shield for the safe development of insect oocyte and embryo: insights from studies of silkmoth chorion protein peptide-analogues of the B family

artículo científico publicado en 2011

Tracking the amyloidogenic core of IAPP amyloid fibrils: Insights from micro-Raman spectroscopy.

artículo científico publicado en 2017

Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle

artículo científico publicado en 2005

Unraveling the aggregation propensity of human insulin C-peptide

artículo científico publicado en 2016

cuticleDB: a relational database of Arthropod cuticular proteins

artículo científico publicado en 2004

gpDB: a database of GPCRs, G-proteins, effectors and their interactions

artículo científico publicado en 2008

mpMoRFsDB: a database of molecular recognition features in membrane proteins

artículo científico publicado en 2013

waveTM: wavelet-based transmembrane segment prediction.

artículo científico publicado en 2004

αCGRP, another amyloidogenic member of the CGRP family.

artículo científico publicado en 2018

Lista de obras de

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

A common 'aggregation-prone' interface possibly participates in the self-assembly of human zona pellucida proteins.

A consensus method for the prediction of 'aggregation-prone' peptides in globular proteins

A database for G proteins and their interaction with GPCRs

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models

A possible structural model of members of the CPF family of cuticular proteins implicating binding to components other than chitin.

A structural model of the chitin-binding domain of cuticle proteins

A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils.

ANTISOMA: A Computational Pipeline for the Reduction of the Aggregation Propensity of Monoclonal Antibodies

Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

Amyloid fibril formation propensity is inherent into the hexapeptide tandemly repeating sequence of the central domain of silkmoth chorion proteins of the A-family

An N-terminal pro-atrial natriuretic peptide (NT-proANP) 'aggregation-prone' segment involved in isolated atrial amyloidosis.

An amyloidogenic determinant in N-terminal pro-brain natriuretic peptide (NT-proBNP): Implications for cardiac amyloidoses

Analysis of Molecular Recognition Features (MoRFs) in membrane proteins

Analysis of Single-Nucleotide Polymorphisms in Human Voltage-Gated Ion Channels

Chameleon 'aggregation-prone' segments of apoA-I: A model of amyloid fibrils formed in apoA-I amyloidosis

Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex

Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins

CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models

Cytokine gene polymorphisms in periodontal disease: a meta-analysis of 53 studies including 4178 cases and 4590 controls

Dogfish egg case structural studies by ATR FT-IR and FT-Raman spectroscopy

Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences

Evaluation of annotation strategies using an entire genome sequence

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

Exploring Amyloidogenicity of Clusterin: A Structural and Bioinformatics Analysis.

Exploring the 'aggregation-prone' core of human Cystatin C: A structural study

FT-Raman spectroscopy as diagnostic tool of Congo red binding to amyloids

Fcgamma receptor polymorphisms and their association with periodontal disease: a meta-analysis

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques

GeneViTo: visualizing gene-product functional and structural features in genomic datasets

GprotPRED: Annotation of Gα, Gβ and Gγ subunits of G-proteins using profile Hidden Markov Models (pHMMs) and application to proteomes

HMMpTM: improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction

Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs.

How many 3D structures do we need to train a predictor?

Identification of a novel 'aggregation-prone'/'amyloidogenic determinant' peptide in the sequence of the highly amyloidogenic human calcitonin

Interactions of the α-subunits of heterotrimeric G-proteins with GPCRs, effectors and RGS proteins: A critical review and analysis of interacting surfaces, conformational shifts, structural diversity and electrostatic potentials ⬇️

Intrinsic aggregation propensity of the CsgB nucleator protein is crucial for curli fiber formation.

MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models.

Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics.

Methylene tetrahydrofolate reductase gene polymorphisms and their association with methotrexate toxicity: a meta-analysis

Mining databases for protein aggregation: a review

Molecular dynamics simulations and structure-based network analysis reveal structural and functional aspects of G-protein coupled receptor dimer interactions.

No evidence for association of CTLA-4 gene polymorphisms with the risk of developing multiple sclerosis: a meta-analysis

OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

Phoenix 100 versus Vitek 2 in the identification of gram-positive and gram-negative bacteria: a comprehensive meta-analysis

PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization

Predicting Alpha Helical Transmembrane Proteins Using HMMs.

Predicting Beta Barrel Transmembrane Proteins Using HMMs

Prediction of cell wall sorting signals in gram-positive bacteria with a hidden markov model: application to complete genomes

Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model

Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks

Structural analysis of peptide-analogues of human Zona Pellucida ZP1 protein with amyloidogenic properties: insights into mammalian Zona Pellucida formation

Structural characterization and molecular dynamics simulations of the caprine and bovine solute carrier family 11 A1 (SLC11A1)

Structural studies and cytotoxicity assays of "aggregation-prone" IAPP(8-16) and its non-amyloidogenic variants suggest its important role in fibrillogenesis and cytotoxicity of human amylin

Structural studies of "aggregation-prone" peptide-analogues of teleostean egg chorion ZPB proteins

TMRPres2D: high quality visual representation of transmembrane protein models

The GNB3 C825T polymorphism and essential hypertension: a meta-analysis of 34 studies including 14,094 cases and 17,760 controls

The amyloid interactome: Exploring protein aggregation

The gram-negative outer membrane modeler: Automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields

The human plasma membrane peripherome: visualization and analysis of interactions.

The pentapeptide LQVVR plays a pivotal role in human cystatin C fibrillization

The silkmoth eggshell as a natural amyloid shield for the safe development of insect oocyte and embryo: insights from studies of silkmoth chorion protein peptide-analogues of the B family

Tracking the amyloidogenic core of IAPP amyloid fibrils: Insights from micro-Raman spectroscopy.

Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle

Unraveling the aggregation propensity of human insulin C-peptide

cuticleDB: a relational database of Arthropod cuticular proteins

gpDB: a database of GPCRs, G-proteins, effectors and their interactions

mpMoRFsDB: a database of molecular recognition features in membrane proteins

waveTM: wavelet-based transmembrane segment prediction.

αCGRP, another amyloidogenic member of the CGRP family.