Lista de obras - Blaz Zupan - Dominio Público Uruguay

A Data Mining Library for miRNA Annotation and Analysis

A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family

artículo científico publicado en 2017

A function-decomposition method for development of hierarchical multi-attribute decision models

article

ABC transporters in Dictyostelium discoideum development

artículo científico publicado en 2013

Acquiring background knowledge for machine learning using function decomposition: a case study in rheumatology.

artículo científico publicado en 1998

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

artículo científico publicado en 2012

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.

artículo científico publicado en 2011

Applications of qualitative multi-attribute decision models in health care

article

Assessment of machine learning reliability methods for quantifying the applicability domain of QSAR regression models.

artículo científico publicado en 2014

Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions

artículo científico publicado en 2013

Biomechanical and clinical alterations of the hip joint following femoral neck fracture and implantation of bipolar hip endoprosthesis

scientific article published on 01 September 2010

BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.

artículo científico publicado en 2011

COLLECTIVE PAIRWISE CLASSIFICATION FOR MULTI-WAY ANALYSIS OF DISEASE AND DRUG DATA.

artículo científico publicado en 2016

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

artículo científico publicado en 2011

Computational models for prediction of yeast strain potential for winemaking from phenotypic profiles

artículo científico publicado en 2013

Computational models reveal genotype-phenotype associations in Saccharomyces cerevisiae

scientific article published on 26 May 2014

Conserved developmental transcriptomes in evolutionarily divergent species.

artículo científico publicado en 2010

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

artículo científico

Data Fusion by Matrix Factorization

artículo científico publicado en 2015

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion

artículo científico publicado en 2015

Data mining techniques and applications in medicine

artículo científico publicado en 1999

Democratized image analytics by visual programming through integration of deep models and small-scale machine learning

artículo científico publicado en 2019

Developmentally regulated DNA methylation in Dictyostelium discoideum

artículo científico publicado en 2006

Discovering disease-disease associations by fusing systems-level molecular data

artículo científico publicado en 2013

Does replication groups scoring reduce false positive rate in SNP interaction discovery?

artículo científico publicado en 2010

Epistasis analysis with global transcriptional phenotypes

article

Fast optimization of non-negative matrix tri-factorization.

artículo científico publicado en 2019

Finding Patterns in Class-Labeled Data Using Data Visualization

scholarly article

FragViz: visualization of fragmented networks

artículo científico publicado en 2010

FreeViz--an intelligent multivariate visualization approach to explorative analysis of biomedical data.

artículo científico publicado en 2007

From hype to reality: data science enabling personalized medicine

artículo científico publicado en 2018

Gene Prioritization by Compressive Data Fusion and Chaining

artículo científico publicado en 2015

Gene discovery by chemical mutagenesis and whole-genome sequencing in Dictyostelium.

artículo científico publicado en 2016

Gene network inference by fusing data from diverse distributions

artículo científico publicado en 2015

Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.

artículo científico publicado en 2014

GenePath: a system for automated construction of genetic networks from mutant data

artículo científico publicado en 2003

GenePath: a system for inference of genetic networks and proposal of genetic experiments.

artículo científico publicado en 2003

GenePath: from mutations to genetic networks and back

artículo científico publicado en 2005

Genome Sequence of a Lethal Strain of Xylem-Invading Verticillium nonalfalfae

artículo científico publicado en 2018

Hands-on training about overfitting

Heterogeneous computing architecture for fast detection of SNP-SNP interactions

artículo científico publicado en 2014

Inference of the molecular mechanism of action from genetic interaction and gene expression data

artículo científico publicado en 2010

Integrative clustering by nonnegative matrix factorization can reveal coherent functional groups from gene profile data

artículo científico publicado en 2014

Interest propagation for knowledge extraction and representation

artículo científico publicado el 1 de enero de 2013

Jumping across biomedical contexts using compressive data fusion

artículo científico publicado en 2016

Knowledge-based bioinformatics for the study of mammalian oocytes.

artículo científico

Knowledge-based data analysis and interpretation

artículo científico publicado en 2006

Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum

artículo científico publicado en 2015

Letters to the Editor

Low prevalence of active COVID-19 in Slovenia: a nationwide population study on a probability-based sample

artículo científico publicado en 2020

Matrix factorization-based data fusion for gene function prediction in baker's yeast and slime mold

artículo científico publicado en 2014

Microarray data mining with visual programming.

artículo científico publicado en 2004

Modelling impacts of cropping systems: Demands and solutions for DEX methodology

New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data

artículo científico publicado en 2010

Nomograms for Visualization of Naive Bayesian Classifier

artículo científico publicado en 2004

Nomograms for visualizing support vector machines

scholarly article published 2005

OCT4 and the acquisition of oocyte developmental competence during folliculogenesis

artículo científico

On Quality of Different Annotation Sources for Gene Expression Analysis

article

Open-source tools for data mining

artículo científico publicado en 2008

Orange: From Experimental Machine Learning to Interactive Data Mining

scholarly article by Janez Demšar et al published 2004 in Lecture Notes in Computer Science

Orange: data mining toolbox in Python ⬇️

scholarly article by Janez Demšar et al published August 2013 in Journal of Machine Learning Research

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

artículo científico publicado en 2016

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

artículo científico publicado en 2007

Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium

artículo científico publicado en 2009

Predictive data mining in clinical medicine: current issues and guidelines

artículo científico publicado en 2006

Predictive model for estimating risk of crush syndrome: a data mining approach

artículo científico publicado en 2007

Predictive model for survival at the conclusion of a damage control laparotomy.

artículo científico publicado en 2000

Ranking and 1-Dimensional Projection of Cell Development Transcription Profiles

article

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008)

artículo científico publicado en 2008

Rule-based clustering for gene promoter structure discovery

scientific article published on 20 April 2009

SNPsyn: detection and exploration of SNP-SNP interactions.

artículo científico publicado en 2011

Scalable non-negative matrix tri-factorization.

artículo científico publicado en 2017

Sieve-based relation extraction of gene regulatory networks from biological literature

artículo científico publicado en 2015

Simple and effective visual models for gene expression cancer diagnostics

article

Stage prediction of embryonic stem cell differentiation from genome-wide expression data

artículo científico publicado en 2011

Subgroup Discovery in Data Sets with Multi–dimensional Responses: A Method and a Case Study in Traumatology

article

Subgroup discovery in data sets with multi-dimensional responses

article

Supporting regenerative medicine by integrative dimensionality reduction.

artículo científico publicado en 2012

TA-clustering: cluster analysis of gene expression profiles through Temporal Abstractions.

artículo científico publicado en 2005

Text Mining approaches for automated literature knowledge extraction and representation.

artículo científico publicado en 2010

Textual features for corpus visualization using correspondence analysis

scholarly article by Saša Petrović et al published 14 October 2009 in Intelligent Data Analysis

Towards knowledge-based gene expression data mining

artículo científico publicado en 2007

Transcriptional profiling of Dictyostelium with RNA sequencing

artículo científico publicado en 2013

Visualization-based cancer microarray data classification analysis

artículo científico publicado en 2007

VizRank: Data Visualization Guided by Machine Learning

scholarly article by Gregor Leban et al published 16 May 2006 in Data Mining and Knowledge Discovery

VizRank: finding informative data projections in functional genomics by machine learning.

artículo científico publicado en 2004

Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain

artículo científico publicado en 2012

dictyBase--a Dictyostelium bioinformatics resource update

artículo científico publicado en 2009

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

artículo científico publicado en 2009

dictyExpress: a web-based platform for sequence data management and analytics in Dictyostelium and beyond

artículo científico publicado en 2017

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

artículo científico publicado en 2010

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

artículo científico publicado en 2010

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

artículo científico publicado en 2011

miR669a and miR669q prevent skeletal muscle differentiation in postnatal cardiac progenitors

scientific journal article

scOrange-a tool for hands-on training of concepts from single-cell data analytics

scientific article published on 01 July 2019

Lista de obras de Blaz Zupan

A Data Mining Library for miRNA Annotation and Analysis

A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family

A function-decomposition method for development of hierarchical multi-attribute decision models

ABC transporters in Dictyostelium discoideum development

Acquiring background knowledge for machine learning using function decomposition: a case study in rheumatology.

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.

Applications of qualitative multi-attribute decision models in health care

Assessment of machine learning reliability methods for quantifying the applicability domain of QSAR regression models.

Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions

Biomechanical and clinical alterations of the hip joint following femoral neck fracture and implantation of bipolar hip endoprosthesis

BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.

COLLECTIVE PAIRWISE CLASSIFICATION FOR MULTI-WAY ANALYSIS OF DISEASE AND DRUG DATA.

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

Computational models for prediction of yeast strain potential for winemaking from phenotypic profiles

Computational models reveal genotype-phenotype associations in Saccharomyces cerevisiae

Conserved developmental transcriptomes in evolutionarily divergent species.

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

Data Fusion by Matrix Factorization

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion

Data mining techniques and applications in medicine

Democratized image analytics by visual programming through integration of deep models and small-scale machine learning

Developmentally regulated DNA methylation in Dictyostelium discoideum

Discovering disease-disease associations by fusing systems-level molecular data

Does replication groups scoring reduce false positive rate in SNP interaction discovery?

Epistasis analysis with global transcriptional phenotypes

Fast optimization of non-negative matrix tri-factorization.

Finding Patterns in Class-Labeled Data Using Data Visualization

FragViz: visualization of fragmented networks

FreeViz--an intelligent multivariate visualization approach to explorative analysis of biomedical data.

From hype to reality: data science enabling personalized medicine

Gene Prioritization by Compressive Data Fusion and Chaining

Gene discovery by chemical mutagenesis and whole-genome sequencing in Dictyostelium.

Gene network inference by fusing data from diverse distributions

Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.

GenePath: a system for automated construction of genetic networks from mutant data

GenePath: a system for inference of genetic networks and proposal of genetic experiments.

GenePath: from mutations to genetic networks and back

Genome Sequence of a Lethal Strain of Xylem-Invading Verticillium nonalfalfae

Hands-on training about overfitting

Heterogeneous computing architecture for fast detection of SNP-SNP interactions

Inference of the molecular mechanism of action from genetic interaction and gene expression data

Integrative clustering by nonnegative matrix factorization can reveal coherent functional groups from gene profile data

Interest propagation for knowledge extraction and representation

Jumping across biomedical contexts using compressive data fusion

Knowledge-based bioinformatics for the study of mammalian oocytes.

Knowledge-based data analysis and interpretation

Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum

Letters to the Editor

Low prevalence of active COVID-19 in Slovenia: a nationwide population study on a probability-based sample

Matrix factorization-based data fusion for gene function prediction in baker's yeast and slime mold

Microarray data mining with visual programming.

Modelling impacts of cropping systems: Demands and solutions for DEX methodology

New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data

Nomograms for Visualization of Naive Bayesian Classifier

Nomograms for visualizing support vector machines

OCT4 and the acquisition of oocyte developmental competence during folliculogenesis

On Quality of Different Annotation Sources for Gene Expression Analysis

Open-source tools for data mining

Orange: From Experimental Machine Learning to Interactive Data Mining

Orange: data mining toolbox in Python ⬇️

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium

Predictive data mining in clinical medicine: current issues and guidelines

Predictive model for estimating risk of crush syndrome: a data mining approach

Predictive model for survival at the conclusion of a damage control laparotomy.

Ranking and 1-Dimensional Projection of Cell Development Transcription Profiles

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008)

Rule-based clustering for gene promoter structure discovery

SNPsyn: detection and exploration of SNP-SNP interactions.

Scalable non-negative matrix tri-factorization.

Sieve-based relation extraction of gene regulatory networks from biological literature

Simple and effective visual models for gene expression cancer diagnostics

Stage prediction of embryonic stem cell differentiation from genome-wide expression data

Subgroup Discovery in Data Sets with Multi–dimensional Responses: A Method and a Case Study in Traumatology

Subgroup discovery in data sets with multi-dimensional responses

Supporting regenerative medicine by integrative dimensionality reduction.

TA-clustering: cluster analysis of gene expression profiles through Temporal Abstractions.