Lista de obras -

143 Identification of Neoantigen-specific CD8+ T Cells in Two Murine Orthotopic Glioblastoma Models Using Cancer Immunogenomics

artículo científico publicado en 2016

A method for constructing interpretable hidden Markov models for the task of identifying binding cores in sequences

artículo científico publicado en 2023

A model for genetic and epigenetic regulatory networks identifies rare pathways for transcription factor induced pluripotency

artículo científico publicado en 2010

Actin polymerization under pressure: a theoretical study

scientific article published on 01 January 2007

An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses

artículo científico publicado en 2020

An Immunocompetent Mouse Model of Zika Virus Infection.

artículo científico publicado en 2018

Author Correction: Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease

artículo científico publicado en 2020

Autophagy Genes Enhance Murine Gammaherpesvirus 68 Reactivation from Latency by Preventing Virus-Induced Systemic Inflammation

artículo científico publicado en 2016

Autophagy genes in myeloid cells counteract IFNγ-induced TNF-mediated cell death and fatal TNF-induced shock

scientific article published on 25 July 2019

Barrier-to-Autointegration Factor 1 Protects against a Basal cGAS-STING Response

artículo científico publicado en 2020

Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

scientific article published on 17 May 2018

Bhlhe40 mediates tissue-specific control of macrophage proliferation in homeostasis and type 2 immunity

scientific article published on 06 May 2019

CD4 and CD8 binding to MHC molecules primarily acts to enhance Lck delivery ⬇️

artículo científico publicado el 13 de septiembre de 2010

Cancer immunogenomic approach to neoantigen discovery in a checkpoint blockade responsive murine model of oral cavity squamous cell carcinoma

artículo científico publicado en 2017

Cell-intrinsic lysosomal lipolysis is essential for alternative activation of macrophages

artículo científico publicado en 2014

Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens

artículo científico publicado en 2014

Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection

artículo científico publicado en 2014

Comment on "reciprocal relations for nonlinear coupled transport"

scientific article published on 08 April 2009

Comparative evaluation of itaconate and its derivatives reveals divergent inflammasome and type I interferon regulation in macrophages

artículo científico publicado en 2020

Comparing the biological impact of glatiramer acetate with the biological impact of a generic

artículo científico publicado en 2014

Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures

artículo científico publicado en 2019

Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

artículo científico publicado en 2020

Compressible models of equilibrium polymerization

scientific article published on 01 November 2005

Coreceptor affinity for MHC defines peptide specificity requirements for TCR interaction with coagonist peptide-MHC.

scientific article published on 12 August 2013

Correction: Defining the Transcriptional and Cellular Landscape of Type 1 Diabetes in the NOD Mouse.

artículo científico publicado en 2014

Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies

artículo científico publicado en 2013

Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.

artículo científico publicado en 2017

Defining the transcriptional and cellular landscape of type 1 diabetes in the NOD mouse

artículo científico publicado en 2013

Detection of neoantigen-specific T cells following a personalized vaccine in a patient with glioblastoma

artículo científico publicado en 2019

Dietary Intake Regulates the Circulating Inflammatory Monocyte Pool

scientific article published on 22 August 2019

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

artículo científico publicado en 2016

Efficient stochastic simulation of reaction-diffusion processes via direct compilation

artículo científico publicado en 2009

Electrophilic properties of itaconate and derivatives regulate the IκBζ-ATF3 inflammatory axis.

artículo científico publicado en 2018

End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data.

artículo científico publicado en 2016

Endogenous Neoantigen-Specific CD8 T Cells Identified in Two Glioblastoma Models Using a Cancer Immunogenomics Approach

artículo científico publicado en 2016

GAM: a web-service for integrated transcriptional and metabolic network analysis.

artículo científico publicado en 2016

Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival

artículo científico publicado en 2014

Gene expression studies of a human monocyte cell line identify dissimilarities between differently manufactured glatiramoids

artículo científico publicado en 2015

High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy

article

High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy

artículo científico publicado en 2018

Homeostatic Control of Innate Lung Inflammation by Vici Syndrome Gene Epg5 and Additional Autophagy Genes Promotes Influenza Pathogenesis

artículo científico publicado en 2016

Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease

scientific article published on 13 January 2020

IL-1-induced Bhlhe40 identifies pathogenic T helper cells in a model of autoimmune neuroinflammation.

artículo científico publicado en 2016

Immunometabolism in the Single-Cell Era

artículo científico publicado en 2020

In vivo imaging of T cell priming

scientific article published on 25 March 2008

Integrating immunometabolism and macrophage diversity

artículo científico publicado en 2016

Interaction of streptavidin-based peptide-MHC oligomers (tetramers) with cell-surface TCRs

artículo científico publicado en 2011

Interferon lambda protects the female reproductive tract against Zika virus infection

artículo científico publicado en 2019

Interferon-λ cures persistent murine norovirus infection in the absence of adaptive immunity

artículo científico publicado en 2014

Interleukin-17 limits hypoxia-inducible factor 1α and development of hypoxic granulomas during tuberculosis

artículo científico publicado en 2017

Irg1 expression in myeloid cells prevents immunopathology during M. tuberculosis infection

artículo científico publicado en 2018

Itaconate Links Inhibition of Succinate Dehydrogenase with Macrophage Metabolic Remodeling and Regulation of Inflammation

artículo científico publicado en 2016

Itaconate confers tolerance to late NLRP3 inflammasome activation

artículo científico publicado en 2021

Itaconate: the poster child of metabolic reprogramming in macrophage function

artículo científico publicado en 2019

Ketogenesis activates metabolically protective γδ T cells in visceral adipose tissue

artículo científico publicado en 2020

Ketogenesis restrains aging-induced exacerbation of COVID in a mouse model

scientific article published on 12 September 2020

LKB1 expressed in dendritic cells governs the development and expansion of thymus-derived regulatory T cells

artículo científico publicado en 2019

Leveraging existing data sets to generate new insights into Alzheimer's disease biology in specific patient subsets

artículo científico publicado en 2015

Limited proliferation capacity of aortic intima resident macrophages requires monocyte recruitment for atherosclerotic plaque progression

artículo científico publicado en 2020

MHC-II neoantigens shape tumour immunity and response to immunotherapy

scientific article published on 23 October 2019

Methionine Metabolism Shapes T Helper Cell Responses through Regulation of Epigenetic Reprogramming

artículo científico publicado en 2020

Mitochondrial Phosphoenolpyruvate Carboxykinase Regulates Metabolic Adaptation and Enables Glucose-Independent Tumor Growth.

artículo científico publicado en 2015

Modular expression analysis reveals functional conservation between human Langerhans cells and mouse cross-priming dendritic cells.

artículo científico publicado en 2015

Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes.

artículo científico publicado en 2018

Myeloid cell interferon responses correlate with clearance of SARS-CoV-2

artículo científico publicado en 2022

Myocardial B cells are a subset of circulating lymphocytes with delayed transit through the heart

artículo científico publicado en 2020

Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization

artículo científico publicado en 2015

Non-canonical glutamine transamination sustains efferocytosis by coupling redox buffering to oxidative phosphorylation

artículo científico publicado en 2021

Opposing Roles of Dendritic Cell Subsets in Experimental GN.

artículo científico publicado en 2017

Polyreactivity increases the apparent affinity of anti-HIV antibodies by heteroligation

artículo científico publicado en 2010

Publisher Correction: Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes

artículo científico publicado en 2018

Publisher Correction: Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

artículo científico publicado en 2019

Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities

artículo científico publicado en 2007

Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors

scientific article published on 01 November 2020

STING Gain-of-Function Disrupts Lymph Node Organogenesis and Innate Lymphoid Cell Development in Mice

scientific article published on 01 June 2020

Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes

scientific article published on 20 January 2020

Single-cell RNA-seq analysis of human CSF microglia and myeloid cells in neuroinflammation

scientific article published on 05 May 2020

Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions

artículo científico publicado en 2021

Solutions of burnt-bridge models for molecular motor transport

artículo científico publicado en 2007

Stochastic bimodalities in deterministically monostable reversible chemical networks due to network topology reduction

artículo científico publicado en 2009

Structural basis for human respiratory syncytial virus NS1-mediated modulation of host responses.

artículo científico publicado en 2017

Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

artículo científico publicado en 2019

Systematic discovery of TLR signaling components delineates viral-sensing circuits

artículo científico publicado en 2011

T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation

artículo científico publicado en 2008

TLR-driven early glycolytic reprogramming via the kinases TBK1-IKKɛ supports the anabolic demands of dendritic cell activation

artículo científico publicado en 2014

TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease

artículo científico publicado en 2017

TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy

scientific article published on 06 August 2020

Targeted chromatin profiling reveals novel enhancers in Ig H and Ig L chain Loci.

artículo científico publicado en 2013

Targeting dendritic cells to accelerate T-cell activation overcomes a bottleneck in tuberculosis vaccine efficacy

artículo científico publicado en 2016

The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid-Type I IFN Signaling Axis

artículo científico publicado en 2020

The immune landscape in tuberculosis reveals populations linked to disease and latency

artículo científico publicado en 2020

The islet-resident macrophage is in an inflammatory state and senses microbial products in blood.

artículo científico publicado en 2017

The miR-17∼92 microRNA Cluster Is a Global Regulator of Tumor Metabolism.

artículo científico publicado en 2016

The microbial metabolite desaminotyrosine protects from influenza through type I interferon.

artículo científico publicado en 2017

Tissue Resident CCR2- and CCR2+ Cardiac Macrophages Differentially Orchestrate Monocyte Recruitment and Fate Specification Following Myocardial Injury

artículo científico publicado en 2019

Tissue-resident natural killer (NK) cells are cell lineages distinct from thymic and conventional splenic NK cells

scientific article published on January 2014

Tonic TCR Signaling Inversely Regulates the Basal Metabolism of CD4+ T Cells

artículo científico publicado en 2020

Transcriptome Analysis Reveals Nonfoamy Rather Than Foamy Plaque Macrophages Are Proinflammatory in Atherosclerotic Murine Models

artículo científico publicado en 2018

Tumor neoantigens: building a framework for personalized cancer immunotherapy

artículo científico publicado en 2015

Type 1 Interferons Induce Changes in Core Metabolism that Are Critical for Immune Function

artículo científico publicado en 2016

Unifying model for molecular determinants of the preselection Vβ repertoire

artículo científico publicado en 2013

infection drives conversion of NK cells into ILC1-like cells

artículo científico publicado en 2019

Lista de obras de

143 Identification of Neoantigen-specific CD8+ T Cells in Two Murine Orthotopic Glioblastoma Models Using Cancer Immunogenomics

A method for constructing interpretable hidden Markov models for the task of identifying binding cores in sequences

A model for genetic and epigenetic regulatory networks identifies rare pathways for transcription factor induced pluripotency

Actin polymerization under pressure: a theoretical study

An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses

An Immunocompetent Mouse Model of Zika Virus Infection.

Author Correction: Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease

Autophagy Genes Enhance Murine Gammaherpesvirus 68 Reactivation from Latency by Preventing Virus-Induced Systemic Inflammation

Autophagy genes in myeloid cells counteract IFNγ-induced TNF-mediated cell death and fatal TNF-induced shock

Barrier-to-Autointegration Factor 1 Protects against a Basal cGAS-STING Response

Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

Bhlhe40 mediates tissue-specific control of macrophage proliferation in homeostasis and type 2 immunity

CD4 and CD8 binding to MHC molecules primarily acts to enhance Lck delivery ⬇️

Cancer immunogenomic approach to neoantigen discovery in a checkpoint blockade responsive murine model of oral cavity squamous cell carcinoma

Cell-intrinsic lysosomal lipolysis is essential for alternative activation of macrophages

Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens

Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection

Comment on "reciprocal relations for nonlinear coupled transport"

Comparative evaluation of itaconate and its derivatives reveals divergent inflammasome and type I interferon regulation in macrophages

Comparing the biological impact of glatiramer acetate with the biological impact of a generic

Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures

Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

Compressible models of equilibrium polymerization

Coreceptor affinity for MHC defines peptide specificity requirements for TCR interaction with coagonist peptide-MHC.

Correction: Defining the Transcriptional and Cellular Landscape of Type 1 Diabetes in the NOD Mouse.

Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies

Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.

Defining the transcriptional and cellular landscape of type 1 diabetes in the NOD mouse

Detection of neoantigen-specific T cells following a personalized vaccine in a patient with glioblastoma

Dietary Intake Regulates the Circulating Inflammatory Monocyte Pool

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

Efficient stochastic simulation of reaction-diffusion processes via direct compilation

Electrophilic properties of itaconate and derivatives regulate the IκBζ-ATF3 inflammatory axis.

End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data.

Endogenous Neoantigen-Specific CD8 T Cells Identified in Two Glioblastoma Models Using a Cancer Immunogenomics Approach

GAM: a web-service for integrated transcriptional and metabolic network analysis.

Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival

Gene expression studies of a human monocyte cell line identify dissimilarities between differently manufactured glatiramoids

High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy

High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy

Homeostatic Control of Innate Lung Inflammation by Vici Syndrome Gene Epg5 and Additional Autophagy Genes Promotes Influenza Pathogenesis

Human and mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer's disease

IL-1-induced Bhlhe40 identifies pathogenic T helper cells in a model of autoimmune neuroinflammation.

Immunometabolism in the Single-Cell Era

In vivo imaging of T cell priming

Integrating immunometabolism and macrophage diversity

Interaction of streptavidin-based peptide-MHC oligomers (tetramers) with cell-surface TCRs

Interferon lambda protects the female reproductive tract against Zika virus infection

Interferon-λ cures persistent murine norovirus infection in the absence of adaptive immunity

Interleukin-17 limits hypoxia-inducible factor 1α and development of hypoxic granulomas during tuberculosis

Irg1 expression in myeloid cells prevents immunopathology during M. tuberculosis infection

Itaconate Links Inhibition of Succinate Dehydrogenase with Macrophage Metabolic Remodeling and Regulation of Inflammation

Itaconate confers tolerance to late NLRP3 inflammasome activation

Itaconate: the poster child of metabolic reprogramming in macrophage function

Ketogenesis activates metabolically protective γδ T cells in visceral adipose tissue

Ketogenesis restrains aging-induced exacerbation of COVID in a mouse model

LKB1 expressed in dendritic cells governs the development and expansion of thymus-derived regulatory T cells

Leveraging existing data sets to generate new insights into Alzheimer's disease biology in specific patient subsets

Limited proliferation capacity of aortic intima resident macrophages requires monocyte recruitment for atherosclerotic plaque progression

MHC-II neoantigens shape tumour immunity and response to immunotherapy

Methionine Metabolism Shapes T Helper Cell Responses through Regulation of Epigenetic Reprogramming

Mitochondrial Phosphoenolpyruvate Carboxykinase Regulates Metabolic Adaptation and Enables Glucose-Independent Tumor Growth.

Modular expression analysis reveals functional conservation between human Langerhans cells and mouse cross-priming dendritic cells.

Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes.

Myeloid cell interferon responses correlate with clearance of SARS-CoV-2

Myocardial B cells are a subset of circulating lymphocytes with delayed transit through the heart

Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization

Non-canonical glutamine transamination sustains efferocytosis by coupling redox buffering to oxidative phosphorylation

Opposing Roles of Dendritic Cell Subsets in Experimental GN.

Polyreactivity increases the apparent affinity of anti-HIV antibodies by heteroligation

Publisher Correction: Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes

Publisher Correction: Subsets of ILC3-ILC1-like cells generate a diversity spectrum of innate lymphoid cells in human mucosal tissues

Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities

Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors

STING Gain-of-Function Disrupts Lymph Node Organogenesis and Innate Lymphoid Cell Development in Mice

Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes

Single-cell RNA-seq analysis of human CSF microglia and myeloid cells in neuroinflammation

Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions

Solutions of burnt-bridge models for molecular motor transport