Lista de obras -

%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding

artículo científico publicado en 2017

A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria

artículo científico publicado en 2015

A statistical approach to finding overlooked genetic associations

artículo científico publicado en 2010

A strategy for assembling the maize (Zea mays L.) genome

artículo científico publicado en 2004

A supervised learning approach to the ensemble clustering of genes

artículo científico publicado en 2014

Activation of endothelial cells by extracellular vesicles derived from Mycobacterium tuberculosis infected macrophages or mice.

artículo científico publicado en 2018

Adjusted likelihood-ratio test for variants with unknown genotypes

scientific article published on 01 October 2018

Analysis of computational codon usage models and their association with translationally slow codons

artículo científico publicado en 2020

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

artículo científico publicado en 2013

Assessing De Novo transcriptome assembly metrics for consistency and utility

artículo científico publicado en 2013

Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison

artículo científico publicado en 2020

Breakpoint structure of the Anopheles gambiae 2Rb chromosomal inversion

artículo científico publicado en 2010

Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing

artículo científico publicado en 2016

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling

artículo científico publicado en 2018

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail

artículo científico publicado en 2017

Detecting inversions with PCA in the presence of population structure

scientific article published on 29 October 2020

Evaluation of five ab initio gene prediction programs for the discovery of maize genes

article

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

artículo científico publicado en 2020

Examination of the genetic basis for sexual dimorphism in the Aedes aegypti (dengue vector mosquito) pupal brain

artículo científico publicado en 2014

Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow

artículo científico publicado en 2015

Freshwater bacterial lifestyles inferred from comparative genomics

artículo científico publicado en 2013

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

artículo científico publicado en 2017

Gene discovery and annotation using LCM-454 transcriptome sequencing.

artículo científico publicado en 2006

Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world.

artículo científico publicado en 2014

Genetic characterization of a novel Iflavirus associated with vomiting disease in the Chinese oak silkmoth Antheraea pernyi

artículo científico publicado en 2014

Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle

scientific article published on 14 October 2019

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi.

artículo científico publicado en 2014

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

artículo científico publicado en 2015

Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination

artículo científico publicado en 2002

Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).

artículo científico publicado en 2007

HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning.

artículo científico publicado en 2018

Haplotype and minimum-chimerism consensus determination using short sequence data

artículo científico publicado en 2012

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra.

artículo científico publicado en 2017

High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

artículo científico publicado en 2011

High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

artículo científico publicado en 2016

High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing

artículo científico publicado en 2009

Highly Accurate and Efficient Data-Driven Methods For Genotype Imputation

artículo científico publicado en 2017

Leveraging evolutionary relationships to improve Anopheles genome assemblies

MIReAD, a minimum information standard for reporting arthropod abundance data

artículo científico publicado en 2019

Mapping genomic features to functional traits through microbial whole genome sequences.

artículo científico publicado en 2014

Minimum Information for Reusable Arthropod Abundance Data (MIReAAD)

scholarly article published 29 September 2018

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

artículo científico publicado en 2015

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes

artículo científico publicado en 2014

Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution.

artículo científico publicado en 2006

Network analysis of synonymous codon usage

artículo científico publicado en 2020

Networks' Characteristics Matter for Systems Biology

artículo científico publicado en 2014

PROBEmer: A web-based software tool for selecting optimal DNA oligos

artículo científico publicado en 2003

PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map

publication published on 28 January 2021

Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations

artículo científico publicado en 2015

Phlebotomus papatasi sand fly predicted salivary protein diversity and immune response potential based on in silico prediction in Egypt and Jordan populations

scientific article published on 13 July 2020

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

artículo científico publicado en 2010

Predicting Local Inversions Using Rectangle Clustering and Representative Rectangle Prediction

artículo científico publicado en 2019

Prediction of fine-tuned promoter activity from DNA sequence

artículo científico publicado en 2016

Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes

artículo científico publicado en 2005

RNA-Rocket: An RNA-Seq Analysis Resource for Infectious Disease Research

scholarly article published 14 August 2014

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research

artículo científico publicado en 2015

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes

artículo científico publicado en 2016

Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

article

SNP Mining from Maize 454 EST Sequences ⬇️

artículo científico publicado el 1 de julio de 2007

SNP discovery via 454 transcriptome sequencing

artículo científico publicado en 2007

Scaling up genome annotation using MAKER and work queue

artículo científico publicado en 2014

Single molecule sequencing-guided scaffolding and correction of draft assemblies

artículo científico publicado en 2017

Standardized metadata for human pathogen/vector genomic sequences

artículo científico publicado en 2014

The B73 Maize Genome: Complexity, Diversity, and Dynamics

artículo científico publicado en 2009

The evolution of the Anopheles 16 genomes project

artículo científico publicado en 2013

Tools and Methods from the Anopheles 16 Genome Project

Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis

artículo científico publicado en 2020

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

artículo científico publicado en 2014

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

artículo científico publicado en 2011

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

artículo científico publicado en 2017

Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster.

artículo científico publicado en 2017

Widespread position-specific conservation of synonymous rare codons within coding sequences.

artículo científico publicado en 2017

Lista de obras de

%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding

A molecular mechanism of artemisinin resistance in Plasmodium falciparum malaria

A statistical approach to finding overlooked genetic associations

A strategy for assembling the maize (Zea mays L.) genome

A supervised learning approach to the ensemble clustering of genes

Activation of endothelial cells by extracellular vesicles derived from Mycobacterium tuberculosis infected macrophages or mice.

Adjusted likelihood-ratio test for variants with unknown genotypes

Analysis of computational codon usage models and their association with translationally slow codons

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Assessing De Novo transcriptome assembly metrics for consistency and utility

Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison

Breakpoint structure of the Anopheles gambiae 2Rb chromosomal inversion

Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Detecting inversions with PCA in the presence of population structure

Evaluation of five ab initio gene prediction programs for the discovery of maize genes

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Examination of the genetic basis for sexual dimorphism in the Aedes aegypti (dengue vector mosquito) pupal brain

Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow

Freshwater bacterial lifestyles inferred from comparative genomics

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

Gene discovery and annotation using LCM-454 transcriptome sequencing.

Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world.

Genetic characterization of a novel Iflavirus associated with vomiting disease in the Chinese oak silkmoth Antheraea pernyi

Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi.

Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection

Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination

Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).

HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning.

Haplotype and minimum-chimerism consensus determination using short sequence data

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra.

High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing

Highly Accurate and Efficient Data-Driven Methods For Genotype Imputation

Leveraging evolutionary relationships to improve Anopheles genome assemblies

MIReAD, a minimum information standard for reporting arthropod abundance data

Mapping genomic features to functional traits through microbial whole genome sequences.

Minimum Information for Reusable Arthropod Abundance Data (MIReAAD)

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes

Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution.

Network analysis of synonymous codon usage

Networks' Characteristics Matter for Systems Biology

PROBEmer: A web-based software tool for selecting optimal DNA oligos

PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map

Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations

Phlebotomus papatasi sand fly predicted salivary protein diversity and immune response potential based on in silico prediction in Egypt and Jordan populations

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

Predicting Local Inversions Using Rectangle Clustering and Representative Rectangle Prediction

Prediction of fine-tuned promoter activity from DNA sequence

Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes

RNA-Rocket: An RNA-Seq Analysis Resource for Infectious Disease Research

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes

Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

SNP Mining from Maize 454 EST Sequences ⬇️

SNP discovery via 454 transcriptome sequencing

Scaling up genome annotation using MAKER and work queue

Single molecule sequencing-guided scaffolding and correction of draft assemblies

Standardized metadata for human pathogen/vector genomic sequences

The B73 Maize Genome: Complexity, Diversity, and Dynamics

The evolution of the Anopheles 16 genomes project

Tools and Methods from the Anopheles 16 Genome Project

Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster.

Widespread position-specific conservation of synonymous rare codons within coding sequences.