Lista de obras -

A Molecular Epidemiology Survey of Respiratory Adenoviruses Circulating in Children Residing in Southern Palestine ⬇️

artículo científico publicado el 3 de agosto de 2012

A Survey of Recent Adenoviral Respiratory Pathogens in Hong Kong Reveals Emergent and Recombinant Human Adenovirus Type 4 (HAdV-E4) Circulating in Civilian Populations

scientific article published on 31 January 2019

A Zoonotic Adenoviral Human Pathogen Emerged through Genomic Recombination among Human and Nonhuman Simian Hosts

artículo científico publicado en 2019

A network-based approach to prioritize results from genome-wide association studies

artículo científico publicado en 2011

Adenoviral Infections in Singapore: Should New Antiviral Therapies and Vaccines Be Adopted?

scientific article published on 01 February 2020

Adenoviromics: Mining the Human Adenovirus Species D Genome

article

Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64.

artículo científico publicado en 2012

Applying genomic and bioinformatic resources to human adenovirus genomes for use in vaccine development and for applications in vector development for gene delivery.

artículo científico publicado en 2010

Are adenoviruses zoonotic? A systematic review of the evidence

scientific article published on 01 January 2019

Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

scholarly article published by Susmita Shrivastava in 2018

Bacterial RecA Protein Promotes Adenoviral Recombination during In Vitro Infection.

artículo científico publicado en 2018

Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays

artículo científico publicado en 2006

CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 Mb.

artículo científico publicado en 2009

Characterization of Influenza A and B Viruses Circulating in Southern China During the 2017-2018 Season

artículo científico publicado en 2020

Characterizing, typing, and naming human adenovirus type 55 in the era of whole genome data

artículo científico publicado en 2013

Chimpanzee Adenovirus Vector Ebola Vaccine--Preliminary Report

artículo científico publicado en 2015

Classification of Myoviridae bacteriophages using protein sequence similarity

artículo científico publicado en 2009

Co-infections of adenovirus species in previously vaccinated patients.

artículo científico publicado en 2006

Comparative genomic analysis of two emergent human adenovirus type 14 respiratory pathogen isolates in China reveals similar yet divergent genomes

artículo científico publicado en 2017

Complete genome sequence of human adenovirus prototype 17.

artículo científico publicado en 2011

Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality ⬇️

artículo científico publicado el 5 de noviembre de 2010

Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen

artículo científico publicado en 2009

Computational analysis of adenovirus serotype 5 (HAdV-C5) from an HAdV coinfection shows genome stability after 45 years of circulation

artículo científico publicado en 2010

Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events ⬇️

artículo científico publicado el 10 de junio de 2013

Computational analysis of human adenovirus serotype 18

artículo científico publicado en 2010

Computational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base gene

artículo científico publicado en 2009

Computational analysis of two species C human adenoviruses provides evidence of a novel virus

artículo científico publicado en 2011

Computational and serologic analysis of novel and known viruses in species human adenovirus D in which serology and genomics do not correlate

artículo científico publicado en 2012

Construction and Characterization of a Novel Recombinant Attenuated and Replication-Deficient Candidate Human Adenovirus Type 3 Vaccine: "Adenovirus Vaccine Within an Adenovirus Vector"

artículo científico publicado en 2020

Construction and characterization of a replication-competent human adenovirus type 3-based vector as a live-vaccine candidate and a viral delivery vector

artículo científico publicado en 2009

CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes.

artículo científico publicado en 2013

CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes

artículo científico publicado en 2002

Corrigendum: Adenoviromics: Mining the Human Adenovirus Species D Genome

article

Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes

artículo científico publicado en 2009

Divergent Evolution of E1A CR3 in Human Adenovirus Species D

artículo científico publicado en 2019

Evidence of molecular evolution driven by recombination events influencing tropism in a novel human adenovirus that causes epidemic keratoconjunctivitis

artículo científico publicado en 2009

Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease

artículo científico

GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes

artículo científico publicado en 2004

Genetic Analysis of a Novel Human Adenovirus with a Serologically Unique Hexon and a Recombinant Fiber Gene ⬇️

artículo científico publicado el 7 de septiembre de 2011

Genome Sequence of Human Adenovirus Type 55, a Re-Emergent Acute Respiratory Disease Pathogen in China ⬇️

artículo científico publicado el 1 de noviembre de 2012

Genome Sequence of a Cynomolgus Macaque Adenovirus (CynAdV-1) Isolate from a Primate Colony in the United Kingdom

artículo científico publicado en 2016

Genome and Bioinformatic Analysis of a HAdV-B14p1 Virus Isolated from a Baby with Pneumonia in Beijing, China ⬇️

artículo científico publicado el 29 de marzo de 2013

Genome sequence of the first human adenovirus type 14 isolated in China.

artículo científico publicado en 2012

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

artículo científico publicado en 2018

Genomic and bioinformatics analyses of HAdV-14p, reference strain of a re-emerging respiratory pathogen and analysis of B1/B2.

artículo científico publicado en 2009

Genomic and bioinformatics analyses of HAdV-4vac and HAdV-7vac, two human adenovirus (HAdV) strains that constituted original prophylaxis against HAdV-related acute respiratory disease, a reemerging epidemic disease

artículo científico publicado en 2005

Genomic and bioinformatics analysis of HAdV-4, a human adenovirus causing acute respiratory disease: implications for gene therapy and vaccine vector development

artículo científico publicado en 2005

Genomic and bioinformatics analysis of HAdV-7, a human adenovirus of species B1 that causes acute respiratory disease: implications for vector development in human gene therapy

artículo científico publicado en 2005

Genomic characterization of human adenovirus 36, a putative obesity agent

artículo científico publicado en 2010

Genomic foundations of evolution and ocular pathogenesis in human adenovirus species D

artículo científico publicado en 2019

Genomics‐based re‐examination of the taxonomy and phylogeny ofhumanandsimian Mastadenoviruses: an evolving whole genomes approach, revealing putative zoonosis, anthroponosis, and amphizoonosis

artículo científico publicado en 2020

Homologous recombination in E3 genes of human adenovirus species D

artículo científico publicado en 2013

In Sffamily Identification of Genes in Bacteriophage DNA

article

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family.

artículo científico publicado en 2014

Molecular evolution of human adenoviruses.

artículo científico publicado en 2013

Molecular evolution of human species D adenoviruses ⬇️

artículo científico publicado el 5 de mayo de 2011

Natural variants of human adenovirus type 3 provide evidence for relative genome stability across time and geographic space

artículo científico publicado en 2009

Natural variation among human adenoviruses: genome sequence and annotation of human adenovirus serotype 1.

artículo científico publicado en 2004

Overreliance on the hexon gene, leading to misclassification of human adenoviruses.

artículo científico publicado en 2012

Parental LTRs Are Important in a Construct of a Stable and Efficient Replication-Competent Infectious Molecular Clone of HIV-1 CRF08_BC ⬇️

artículo científico publicado el 17 de febrero de 2012

Pitfalls of restriction enzyme analysis in identifying, characterizing, typing, and naming viral pathogens in the era of whole genome data, as illustrated by HAdV type 55.

artículo científico publicado en 2016

Predicting the next eye pathogen: analysis of a novel adenovirus

artículo científico publicado en 2013

RBD mutations from circulating SARS-CoV-2 strains enhance the structural stability and human ACE2 affinity of the spike protein

scientific article (preprint)

Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0.

artículo científico publicado en 2010

Re-emergent human adenovirus genome type 7d caused an acute respiratory disease outbreak in Southern China after a twenty-one year absence

artículo científico publicado en 2014

Recombination of the epsilon determinant and corneal tropism: Human adenovirus species D types 15, 29, 56, and 69.

artículo científico publicado en 2015

Selection Pressure in the Human Adenovirus Fiber Knob Drives Cell Specificity in Epidemic Keratoconjunctivitis

artículo científico publicado en 2016

Simian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogen

artículo científico publicado en 2013

Taxonomic Parsing of Bacteriophages Using Core Genes and In Silico Proteome-Based CGUG and Applications to Small Bacterial Genomes ⬇️

artículo científico publicado el 1 de enero de 2010

The 5'UTR in human adenoviruses: leader diversity in late gene expression

artículo científico publicado en 2017

The revolution in viral genomics as exemplified by the bioinformatic analysis of human adenoviruses

artículo científico publicado en 2010

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

artículo científico publicado en 2010

Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events

artículo científico publicado en 2022

Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

artículo científico publicado en 2008

Using the whole-genome sequence to characterize and name human adenoviruses

artículo científico publicado en 2011

Viral genomics and bioinformatics

artículo científico publicado en 2010

Lista de obras de

A Molecular Epidemiology Survey of Respiratory Adenoviruses Circulating in Children Residing in Southern Palestine ⬇️

A Survey of Recent Adenoviral Respiratory Pathogens in Hong Kong Reveals Emergent and Recombinant Human Adenovirus Type 4 (HAdV-E4) Circulating in Civilian Populations

A Zoonotic Adenoviral Human Pathogen Emerged through Genomic Recombination among Human and Nonhuman Simian Hosts

A network-based approach to prioritize results from genome-wide association studies

Adenoviral Infections in Singapore: Should New Antiviral Therapies and Vaccines Be Adopted?

Adenoviromics: Mining the Human Adenovirus Species D Genome

Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64.

Applying genomic and bioinformatic resources to human adenovirus genomes for use in vaccine development and for applications in vector development for gene delivery.

Are adenoviruses zoonotic? A systematic review of the evidence

Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

Bacterial RecA Protein Promotes Adenoviral Recombination during In Vitro Infection.

Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays

CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 Mb.

Characterization of Influenza A and B Viruses Circulating in Southern China During the 2017-2018 Season

Characterizing, typing, and naming human adenovirus type 55 in the era of whole genome data

Chimpanzee Adenovirus Vector Ebola Vaccine--Preliminary Report

Classification of Myoviridae bacteriophages using protein sequence similarity

Co-infections of adenovirus species in previously vaccinated patients.

Comparative genomic analysis of two emergent human adenovirus type 14 respiratory pathogen isolates in China reveals similar yet divergent genomes

Complete genome sequence of human adenovirus prototype 17.

Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality ⬇️

Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen

Computational analysis of adenovirus serotype 5 (HAdV-C5) from an HAdV coinfection shows genome stability after 45 years of circulation

Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events ⬇️

Computational analysis of human adenovirus serotype 18

Computational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base gene

Computational analysis of two species C human adenoviruses provides evidence of a novel virus

Computational and serologic analysis of novel and known viruses in species human adenovirus D in which serology and genomics do not correlate

Construction and Characterization of a Novel Recombinant Attenuated and Replication-Deficient Candidate Human Adenovirus Type 3 Vaccine: "Adenovirus Vaccine Within an Adenovirus Vector"

Construction and characterization of a replication-competent human adenovirus type 3-based vector as a live-vaccine candidate and a viral delivery vector

CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes.

CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes

Corrigendum: Adenoviromics: Mining the Human Adenovirus Species D Genome

Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes

Divergent Evolution of E1A CR3 in Human Adenovirus Species D

Evidence of molecular evolution driven by recombination events influencing tropism in a novel human adenovirus that causes epidemic keratoconjunctivitis

Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease

GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes

Genetic Analysis of a Novel Human Adenovirus with a Serologically Unique Hexon and a Recombinant Fiber Gene ⬇️

Genome Sequence of Human Adenovirus Type 55, a Re-Emergent Acute Respiratory Disease Pathogen in China ⬇️

Genome Sequence of a Cynomolgus Macaque Adenovirus (CynAdV-1) Isolate from a Primate Colony in the United Kingdom

Genome and Bioinformatic Analysis of a HAdV-B14p1 Virus Isolated from a Baby with Pneumonia in Beijing, China ⬇️

Genome sequence of the first human adenovirus type 14 isolated in China.

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

Genomic and bioinformatics analyses of HAdV-14p, reference strain of a re-emerging respiratory pathogen and analysis of B1/B2.

Genomic and bioinformatics analyses of HAdV-4vac and HAdV-7vac, two human adenovirus (HAdV) strains that constituted original prophylaxis against HAdV-related acute respiratory disease, a reemerging epidemic disease

Genomic and bioinformatics analysis of HAdV-4, a human adenovirus causing acute respiratory disease: implications for gene therapy and vaccine vector development

Genomic and bioinformatics analysis of HAdV-7, a human adenovirus of species B1 that causes acute respiratory disease: implications for vector development in human gene therapy

Genomic characterization of human adenovirus 36, a putative obesity agent

Genomic foundations of evolution and ocular pathogenesis in human adenovirus species D

Genomics‐based re‐examination of the taxonomy and phylogeny ofhumanandsimian Mastadenoviruses: an evolving whole genomes approach, revealing putative zoonosis, anthroponosis, and amphizoonosis

Homologous recombination in E3 genes of human adenovirus species D

In Sffamily Identification of Genes in Bacteriophage DNA

Integration of genomic and proteomic analyses in the classification of the Siphoviridae family.

Molecular evolution of human adenoviruses.

Molecular evolution of human species D adenoviruses ⬇️

Natural variants of human adenovirus type 3 provide evidence for relative genome stability across time and geographic space

Natural variation among human adenoviruses: genome sequence and annotation of human adenovirus serotype 1.

Overreliance on the hexon gene, leading to misclassification of human adenoviruses.

Parental LTRs Are Important in a Construct of a Stable and Efficient Replication-Competent Infectious Molecular Clone of HIV-1 CRF08_BC ⬇️

Pitfalls of restriction enzyme analysis in identifying, characterizing, typing, and naming viral pathogens in the era of whole genome data, as illustrated by HAdV type 55.

Predicting the next eye pathogen: analysis of a novel adenovirus

RBD mutations from circulating SARS-CoV-2 strains enhance the structural stability and human ACE2 affinity of the spike protein

Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0.

Re-emergent human adenovirus genome type 7d caused an acute respiratory disease outbreak in Southern China after a twenty-one year absence

Recombination of the epsilon determinant and corneal tropism: Human adenovirus species D types 15, 29, 56, and 69.

Selection Pressure in the Human Adenovirus Fiber Knob Drives Cell Specificity in Epidemic Keratoconjunctivitis

Simian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogen

Taxonomic Parsing of Bacteriophages Using Core Genes and In Silico Proteome-Based CGUG and Applications to Small Bacterial Genomes ⬇️

The 5'UTR in human adenoviruses: leader diversity in late gene expression

The revolution in viral genomics as exemplified by the bioinformatic analysis of human adenoviruses

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events

Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

Using the whole-genome sequence to characterize and name human adenoviruses

Viral genomics and bioinformatics