Lista de obras -

A Single-Molecule View of Archaeal Transcription

artículo científico publicado en 2019

A novel interdomain consortium from a Costa Rican oil well composed of Methanobacterium cahuitense sp. nov. and Desulfomicrobium aggregans sp. nov. ⬇️

artículo científico publicado en 2023

A prokaryotic twist on argonaute function

artículo científico publicado en 2015

A starting point for fluorescence-based single-molecule measurements in biomolecular research.

artículo científico publicado en 2014

Aptamer displacement identifies alternative small-molecule target sites that escape viral resistance

artículo científico

Archaeology of RNA polymerase: factor swapping during the transcription cycle.

artículo científico publicado en 2013

Breaking the concentration limit of optical single-molecule detection.

artículo científico

Complete architecture of the archaeal RNA polymerase open complex from single-molecule FRET and NPS.

artículo científico publicado en 2015

Cycling through transcription with the RNA polymerase F/E (RPB4/7) complex: structure, function and evolution of archaeal RNA polymerase

artículo científico publicado en 2010

DNA origami as biocompatible surface to match single-molecule and ensemble experiments ⬇️

artículo científico publicado el 20 de abril de 2012

DNA origami-based single-molecule force spectroscopy elucidates RNA Polymerase III pre-initiation complex stability

artículo científico publicado en 2020

DNA-silencing by prokaryotic Argonaute proteins adds a new layer of defence against invading nucleic acids

artículo científico publicado en 2018

Displacement of the transcription factor B reader domain during transcription initiation

Enhancing single-molecule fluorescence with nanophotonics

artículo científico publicado en 2014

Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways

artículo científico publicado en 2014

Evaluation and optimisation of unnatural amino acid incorporation and bioorthogonal bioconjugation for site-specific fluorescent labelling of proteins expressed in mammalian cells

Evolution of multisubunit RNA polymerases in the three domains of life.

artículo científico publicado en 2011

FRET (fluorescence resonance energy transfer) sheds light on transcription

artículo científico publicado en 2011

Fluorescently labeled recombinant RNAP system to probe archaeal transcription initiation.

artículo científico

Guide-independent DNA cleavage by archaeal Argonaute from Methanocaldococcus jannaschii.

artículo científico publicado en 2017

HIV-1 nucleocapsid traps reverse transcriptase on nucleic acid substrates

artículo científico publicado en 2008

Hold on!: RNA polymerase interactions with the nascent RNA modulate transcription elongation and termination.

artículo científico publicado en 2010

Lytic water dynamics reveal evolutionarily conserved mechanisms of ATP hydrolysis by TIP49 AAA+ ATPases.

scientific article published on 06 March 2014

Making connections—strategies for single molecule fluorescence biophysics ⬇️

artículo científico publicado el 13 de junio de 2013

Mechanistic Insights into Archaeal and Human Argonaute Substrate Binding and Cleavage Properties

artículo científico publicado en 2016

Mechanistic insights into Lhr helicase function in DNA repair

scientific article published on 24 July 2020

Methanofollis propanolicus sp. nov., a novel archaeal isolate from a Costa Rican oil well that uses propanol for methane production

artículo científico publicado en 2022

Modern biophysical approaches probe transcription-factor-induced DNA bending and looping ⬇️

artículo científico publicado el 1 de febrero de 2013

Molecular Mechanisms of Transcription Initiation-Structure, Function, and Evolution of TFE/TFIIE-Like Factors and Open Complex Formation.

artículo científico publicado en 2016

Molecular force spectroscopy with a DNA origami-based nanoscopic force clamp.

artículo científico publicado en 2016

Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation

artículo científico publicado en 2017

Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro.

artículo científico publicado en 2009

Molecular mechanisms of archaeal RNA polymerase.

artículo científico publicado en 2009

Nanopore sequencing of RNA and cDNA molecules in <i>Escherichia coli</i>

artículo científico publicado en 2021

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription

artículo científico publicado en 2019

Opposed steric constraints in human DNA polymerase beta and E. coli DNA polymerase I.

artículo científico publicado en 2008

Orthogonal spin labeling using click chemistry for in vitro and in vivo applications

artículo científico publicado en 2016

RNA-Binding to Archaeal RNA Polymerase Subunits F/E: A DEER and FRET Study

artículo científico publicado en 2010

RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase: using fluorescence anisotropy to monitor RNAP assembly in vitro

artículo científico publicado en 2009

Recent advances in the understanding of archaeal transcription.

artículo científico publicado en 2011

Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP.

artículo científico publicado en 2016

Same same but different: The evolution of TBP in archaea and their eukaryotic offspring

artículo científico publicado en 2017

Simulation vs. reality: a comparison of in silico distance predictions with DEER and FRET measurements

artículo científico publicado en 2012

Single-molecule FRET supports the two-state model of Argonaute action.

artículo científico publicado en 2013

Site-Specific Fluorescent Labeling of Argonaute for FRET-Based Bio-Assays

artículo científico publicado en 2017

Site-specific labelling of native mammalian proteins for single-molecule FRET measurements.

artículo científico publicado en 2018

Small molecule inhibitors targeting HIV-1 reverse transcriptase dimerization

artículo científico publicado en 2008

Specific binding of a hexanucleotide to HIV-1 reverse transcriptase: a novel class of bioactive molecules

artículo científico

Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif

artículo científico publicado en 2010

Structural and functional insights into the fly microRNA biogenesis factor Loquacious

artículo científico publicado en 2016

Structural and mechanistic insights into an archaeal DNA-guided Argonaute protein

artículo científico publicado en 2017

Structure and Function of RNA Polymerases and the Transcription Machineries

artículo científico publicado en 2017

Superresolution microscopy with transient binding

artículo científico publicado en 2016

TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle

artículo científico publicado en 2016

The HCF136 protein is essential for assembly of the photosystem II reaction center in Arabidopsis thaliana

artículo científico publicado en 2002

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

artículo científico publicado en 2011

Towards structural biology with super-resolution microscopy

artículo científico publicado en 2018

Transcription initiation factor TBP: old friend new questions

artículo científico publicado en 2019

Tunable reagents for multi-functional bioconjugation: reversible or permanent chemical modification of proteins and peptides by control of maleimide hydrolysis ⬇️

artículo científico publicado el 5 de abril de 2011

Lista de obras de

A Single-Molecule View of Archaeal Transcription

A novel interdomain consortium from a Costa Rican oil well composed of Methanobacterium cahuitense sp. nov. and Desulfomicrobium aggregans sp. nov. ⬇️

A prokaryotic twist on argonaute function

A starting point for fluorescence-based single-molecule measurements in biomolecular research.

Aptamer displacement identifies alternative small-molecule target sites that escape viral resistance

Archaeology of RNA polymerase: factor swapping during the transcription cycle.

Breaking the concentration limit of optical single-molecule detection.

Complete architecture of the archaeal RNA polymerase open complex from single-molecule FRET and NPS.

Cycling through transcription with the RNA polymerase F/E (RPB4/7) complex: structure, function and evolution of archaeal RNA polymerase

DNA origami as biocompatible surface to match single-molecule and ensemble experiments ⬇️

DNA origami-based single-molecule force spectroscopy elucidates RNA Polymerase III pre-initiation complex stability

DNA-silencing by prokaryotic Argonaute proteins adds a new layer of defence against invading nucleic acids

Displacement of the transcription factor B reader domain during transcription initiation

Enhancing single-molecule fluorescence with nanophotonics

Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways

Evaluation and optimisation of unnatural amino acid incorporation and bioorthogonal bioconjugation for site-specific fluorescent labelling of proteins expressed in mammalian cells

Evolution of multisubunit RNA polymerases in the three domains of life.

FRET (fluorescence resonance energy transfer) sheds light on transcription

Fluorescently labeled recombinant RNAP system to probe archaeal transcription initiation.

Guide-independent DNA cleavage by archaeal Argonaute from Methanocaldococcus jannaschii.

HIV-1 nucleocapsid traps reverse transcriptase on nucleic acid substrates

Hold on!: RNA polymerase interactions with the nascent RNA modulate transcription elongation and termination.

Lytic water dynamics reveal evolutionarily conserved mechanisms of ATP hydrolysis by TIP49 AAA+ ATPases.

Making connections—strategies for single molecule fluorescence biophysics ⬇️

Mechanistic Insights into Archaeal and Human Argonaute Substrate Binding and Cleavage Properties

Mechanistic insights into Lhr helicase function in DNA repair

Methanofollis propanolicus sp. nov., a novel archaeal isolate from a Costa Rican oil well that uses propanol for methane production

Modern biophysical approaches probe transcription-factor-induced DNA bending and looping ⬇️

Molecular Mechanisms of Transcription Initiation-Structure, Function, and Evolution of TFE/TFIIE-Like Factors and Open Complex Formation.

Molecular force spectroscopy with a DNA origami-based nanoscopic force clamp.

Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation

Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro.

Molecular mechanisms of archaeal RNA polymerase.

Nanopore sequencing of RNA and cDNA molecules in <i>Escherichia coli</i>

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription

Opposed steric constraints in human DNA polymerase beta and E. coli DNA polymerase I.

Orthogonal spin labeling using click chemistry for in vitro and in vivo applications

RNA-Binding to Archaeal RNA Polymerase Subunits F/E: A DEER and FRET Study

RNAP subunits F/E (RPB4/7) are stably associated with archaeal RNA polymerase: using fluorescence anisotropy to monitor RNAP assembly in vitro

Recent advances in the understanding of archaeal transcription.

Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP.

Same same but different: The evolution of TBP in archaea and their eukaryotic offspring

Simulation vs. reality: a comparison of in silico distance predictions with DEER and FRET measurements

Single-molecule FRET supports the two-state model of Argonaute action.

Site-Specific Fluorescent Labeling of Argonaute for FRET-Based Bio-Assays

Site-specific labelling of native mammalian proteins for single-molecule FRET measurements.

Small molecule inhibitors targeting HIV-1 reverse transcriptase dimerization

Specific binding of a hexanucleotide to HIV-1 reverse transcriptase: a novel class of bioactive molecules

Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif

Structural and functional insights into the fly microRNA biogenesis factor Loquacious

Structural and mechanistic insights into an archaeal DNA-guided Argonaute protein

Structure and Function of RNA Polymerases and the Transcription Machineries

Superresolution microscopy with transient binding

TFE and Spt4/5 open and close the RNA polymerase clamp during the transcription cycle

The HCF136 protein is essential for assembly of the photosystem II reaction center in Arabidopsis thaliana

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

Towards structural biology with super-resolution microscopy

Transcription initiation factor TBP: old friend new questions

Tunable reagents for multi-functional bioconjugation: reversible or permanent chemical modification of proteins and peptides by control of maleimide hydrolysis ⬇️