Lista de obras -

A BAYESIAN NONPARAMETRIC MODEL FOR RECONSTRUCTING TUMOR SUBCLONES BASED ON MUTATION PAIRS.

artículo científico publicado en 2016

A Bayesian Graphical Model for Integrative Analysis of TCGA Data

artículo científico publicado en 2012

A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data.

artículo científico publicado en 2012

A Bayesian hierarchical model for inference across related reverse phase protein arrays experiments

artículo científico publicado en 2014

A Bayesian interval dose-finding design addressingOckham's razor: mTPI-2

artículo científico publicado en 2017

A Bayesian random partition model for sequential refinement and coagulation

scientific article published on 09 April 2019

A Nonparametric Bayesian Model for Local Clustering with Application to Proteomics

artículo científico publicado en 2013

A Nonparametric Bayesian Model for Nested Clustering

artículo científico publicado en 2016

A Time‐Series DDP for Functional Proteomics Profiles ⬇️

artículo científico publicado el 5 de enero de 2012

A decision-theoretic phase I-II design for ordinal outcomes in two cycles

artículo científico publicado en 2015

A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples

artículo científico publicado en 2004

A subgroup cluster-based Bayesian adaptive design for precision medicine

artículo científico publicado en 2016

AAA: triple adaptive Bayesian designs for the identification of optimal dose combinations in dual-agent dose finding trials

artículo científico publicado en 2018

Accuracy of RNA-Seq and its dependence on sequencing depth ⬇️

artículo científico publicado el 24 de agosto de 2012

An integrated dose-finding tool for phase I trials in oncology

artículo científico publicado en 2015

An oncolytic adenovirus targeting TGFβ inhibits pro-tumorigenic signals and produces immune activation: A novel approach to enhance anti-PD-1 and anti-CTLA-4 therapy

scientific article published on 01 July 2019

BM-BC: a Bayesian method of base calling for Solexa sequence data ⬇️

artículo científico publicado el 24 de agosto de 2012

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data

artículo científico publicado en 2012

BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.

artículo científico publicado en 2014

BM-map: Bayesian mapping of multireads for next-generation sequencing data

artículo científico publicado en 2011

Bayclone: Bayesian nonparametric inference of tumor subclones using NGS data

artículo científico publicado en 2015

Bayesian Approaches to Subgroup Analysis and Related Adaptive Clinical Trial Designs

artículo científico publicado en 2019

Bayesian Dose-Finding in Two Treatment Cycles Based on the Joint Utility of Efficacy and Toxicity

artículo científico publicado en 2015

Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data

artículo científico publicado en 2015

Bayesian estimation of inverse dose response

artículo científico publicado en 2008

Bayesian graphical models for computational network biology.

artículo científico publicado en 2018

Bayesian hierarchical models for protein networks in single-cell mass cytometry

artículo científico publicado en 2014

Bayesian inference for intratumour heterogeneity in mutations and copy number variation

artículo científico publicado en 2016

Bayesian models based on test statistics for multiple hypothesis testing problems

artículo científico publicado en 2008

Characterizing Cancer-Specific Networks by Integrating TCGA Data

artículo científico publicado en 2014

Clustering distributions with the marginalized nested Dirichlet process.

artículo científico publicado en 2017

Detecting differential patterns of interaction in molecular pathways

artículo científico publicado en 2014

Discussion of "A hybrid phase I-II/III clinical trial design allowing dose re-optimization in phase III" by Andrew G. Chapple and Peter F. Thall

scientific article published on 03 April 2019

Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men

scientific article published on 04 September 2018

Heterogeneous reciprocal graphical models.

artículo científico publicado en 2017

Imaging-Genomic Study of Head and Neck Squamous Cell Carcinoma: Associations Between Radiomic Phenotypes and Genomic Mechanisms via Integration of The Cancer Genome Atlas and The Cancer Imaging Archive

artículo científico publicado en 2019

MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling ⬇️

artículo científico publicado en 2015

Modeling Protein Expression and Protein Signaling Pathways

artículo científico publicado en 2011

Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data

artículo científico publicado en 2013

On differential gene expression using RNA-Seq data

artículo científico publicado en 2011

Personalized antibodies for gastroesophageal adenocarcinoma (PANGEA): a phase 2 study evaluating an individualized treatment strategy for metastatic disease

artículo científico publicado en 2020

Probability intervals of toxicity and efficacy design for dose-finding clinical trials in oncology

scientific article published on 16 December 2020

Propriety conditions for the Bayesian autologistic model - Inference for histone modifications

artículo científico publicado en 2013

R-TPI: rolling toxicity probability interval design to shorten the duration and maintain safety of phase I trials

artículo científico publicado en 2019

Radiogenomics of breast cancer using dynamic contrast enhanced MRI and gene expression profiling

scientific article published on 15 July 2019

RoBoT: a robust Bayesian hypothesis testing method for basket trials

artículo científico publicado en 2020

Scalable Bayesian Nonparametric Clustering and Classification

artículo científico publicado en 2019

Semiparametric Bayesian inference for the transmission dynamics of COVID-19 with a state-space model

scientific article published on 15 September 2020

Sparse Bayesian Graphical Models for RPPA Time Course Data

artículo científico publicado en 2012

Subgroup-Based Adaptive (SUBA) Designs for Multi-Arm Biomarker Trials ⬇️

artículo científico publicado en 2014

TCGA-Assembler 2: Software Pipeline for Retrieval and Processing of TCGA/CPTAC Data.

artículo científico publicado en 2017

TEAMS: Toxicity- and Efficacy-based Dose Insertion Design with Adaptive Model Selection for Phase I/II Dose-Escalation Trials in Oncology

artículo científico publicado en 2015

The evolutionary history of 2,658 cancers

artículo científico publicado en 2020

The i3+3 design for phase I clinical trials

scientific article published on 15 July 2019

Toward breaking the histone code: bayesian graphical models for histone modifications

artículo científico publicado en 2013

Toxicity and Efficacy Probability Interval Design for Phase I Adoptive Cell Therapy Dose-Finding Clinical Trials

artículo científico publicado en 2016

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

artículo científico publicado en 2015

dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes ⬇️

artículo científico publicado el 19 de octubre de 2012

Lista de obras de

A BAYESIAN NONPARAMETRIC MODEL FOR RECONSTRUCTING TUMOR SUBCLONES BASED ON MUTATION PAIRS.

A Bayesian Graphical Model for Integrative Analysis of TCGA Data

A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data.

A Bayesian hierarchical model for inference across related reverse phase protein arrays experiments

A Bayesian interval dose-finding design addressingOckham's razor: mTPI-2

A Bayesian random partition model for sequential refinement and coagulation

A Nonparametric Bayesian Model for Local Clustering with Application to Proteomics

A Nonparametric Bayesian Model for Nested Clustering

A Time‐Series DDP for Functional Proteomics Profiles ⬇️

A decision-theoretic phase I-II design for ordinal outcomes in two cycles

A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples

A subgroup cluster-based Bayesian adaptive design for precision medicine

AAA: triple adaptive Bayesian designs for the identification of optimal dose combinations in dual-agent dose finding trials

Accuracy of RNA-Seq and its dependence on sequencing depth ⬇️

An integrated dose-finding tool for phase I trials in oncology

An oncolytic adenovirus targeting TGFβ inhibits pro-tumorigenic signals and produces immune activation: A novel approach to enhance anti-PD-1 and anti-CTLA-4 therapy

BM-BC: a Bayesian method of base calling for Solexa sequence data ⬇️

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data

BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.

BM-map: Bayesian mapping of multireads for next-generation sequencing data

Bayclone: Bayesian nonparametric inference of tumor subclones using NGS data

Bayesian Approaches to Subgroup Analysis and Related Adaptive Clinical Trial Designs

Bayesian Dose-Finding in Two Treatment Cycles Based on the Joint Utility of Efficacy and Toxicity

Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data

Bayesian estimation of inverse dose response

Bayesian graphical models for computational network biology.

Bayesian hierarchical models for protein networks in single-cell mass cytometry

Bayesian inference for intratumour heterogeneity in mutations and copy number variation

Bayesian models based on test statistics for multiple hypothesis testing problems

Characterizing Cancer-Specific Networks by Integrating TCGA Data

Clustering distributions with the marginalized nested Dirichlet process.

Detecting differential patterns of interaction in molecular pathways

Discussion of "A hybrid phase I-II/III clinical trial design allowing dose re-optimization in phase III" by Andrew G. Chapple and Peter F. Thall

Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men

Heterogeneous reciprocal graphical models.

Imaging-Genomic Study of Head and Neck Squamous Cell Carcinoma: Associations Between Radiomic Phenotypes and Genomic Mechanisms via Integration of The Cancer Genome Atlas and The Cancer Imaging Archive

MAD Bayes for Tumor Heterogeneity - Feature Allocation with Exponential Family Sampling ⬇️

Modeling Protein Expression and Protein Signaling Pathways

Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data

On differential gene expression using RNA-Seq data

Personalized antibodies for gastroesophageal adenocarcinoma (PANGEA): a phase 2 study evaluating an individualized treatment strategy for metastatic disease

Probability intervals of toxicity and efficacy design for dose-finding clinical trials in oncology

Propriety conditions for the Bayesian autologistic model - Inference for histone modifications

R-TPI: rolling toxicity probability interval design to shorten the duration and maintain safety of phase I trials

Radiogenomics of breast cancer using dynamic contrast enhanced MRI and gene expression profiling

RoBoT: a robust Bayesian hypothesis testing method for basket trials

Scalable Bayesian Nonparametric Clustering and Classification

Semiparametric Bayesian inference for the transmission dynamics of COVID-19 with a state-space model

Sparse Bayesian Graphical Models for RPPA Time Course Data

Subgroup-Based Adaptive (SUBA) Designs for Multi-Arm Biomarker Trials ⬇️

TCGA-Assembler 2: Software Pipeline for Retrieval and Processing of TCGA/CPTAC Data.

TEAMS: Toxicity- and Efficacy-based Dose Insertion Design with Adaptive Model Selection for Phase I/II Dose-Escalation Trials in Oncology

The evolutionary history of 2,658 cancers

The i3+3 design for phase I clinical trials

Toward breaking the histone code: bayesian graphical models for histone modifications

Toxicity and Efficacy Probability Interval Design for Phase I Adoptive Cell Therapy Dose-Finding Clinical Trials

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes ⬇️