Lista de obras -

A community-based annotation framework for linking solanaceae genomes with phenomes

artículo científico publicado en 2008

A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research

artículo científico publicado en 2012

A dynamic interface for capsaicinoid systems biology.

artículo científico publicado en 2009

A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz)

artículo científico publicado en 2021

A quick guide for student-driven community genome annotation

artículo científico publicado en 2019

An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant.

artículo científico publicado en 2015

An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita

artículo científico publicado en 2015

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

artículo científico publicado en 2007

Analysis of Ultra Low Genome Conservation in Clostridium difficile ⬇️

artículo científico publicado el 8 de diciembre de 2010

Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

artículo científico publicado en 2014

Asian citrus psyllid stylet morphology and applicability to the model for inter-instar stylet replacement in the potato psyllid

artículo científico publicado en 2018

Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).

artículo científico publicado en 2016

BrAPI-an application programming interface for plant breeding applications

artículo científico publicado en 2019

Breedbase: a digital ecosystem for modern plant breeding

artículo científico publicado en 2022

Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? – A Case Study With Hydrogen Cyanide in Cassava

artículo científico publicado en 2021

Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages

artículo científico publicado en 2020

Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts

artículo científico publicado en 2005

Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.

artículo científico publicado en 2017

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

artículo científico publicado en 2006

Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato

artículo científico publicado en 2008

Comparative analysis of Cucurbita pepo metabolism throughout fruit development in acorn squash and oilseed pumpkin

artículo científico publicado en 2016

Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

artículo científico publicado en 2015

Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression

scientific article published on 13 August 2020

Comprehensive genotyping of a Brazilian cassava (Manihot esculenta Crantz) germplasm bank: insights into diversification and domestication

artículo científico publicado en 2021

Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

artículo científico publicado en 2016

Correction to: Current status and impending progress for cassava structural genomics

artículo científico publicado en 2021

Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants

artículo científico

Current status and impending progress for cassava structural genomics

artículo científico publicado en 2021

De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species

scientific article published on 08 August 2019

De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus.

artículo científico publicado en 2017

De-novo assembly of zucchini genome reveals a whole genome duplication associated with the origin of theCucurbitagenus

article published in 2017

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

artículo científico publicado en 2012

Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts

artículo científico publicado en 2020

Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta).

artículo científico publicado en 2014

Dissecting Tissue-Specific Transcriptomic Responses from Leaf and Roots under Salt Stress in Petunia hybrida Mitchell.

artículo científico publicado en 2017

Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae

artículo científico publicado en 2016

Draft Genome Sequence Resource of the Citrus Stem-End Rot Fungal Pathogen Lasiodiplodia theobromae CITRA15

artículo científico publicado en 2020

Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays

artículo científico publicado en 2015

EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot

artículo científico publicado en 2006

Enabling proteomic studies with RNA‐Seq: The proteome of tomato pollen as a test case ⬇️

artículo científico publicado el 1 de marzo de 2012

Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome

artículo científico publicado en 2006

Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

scientific article published on 01 May 2020

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

Floral gene resources from basal angiosperms for comparative genomics research

artículo científico publicado en 2005

From manual curation to visualization of gene families and networks across Solanaceae plant species

artículo científico publicado en 2013

Genes conserved for arbuscular mycorrhizal symbiosis identified through phylogenomics.

artículo científico publicado en 2016

Genetic structure of the four wild tomato species in the Solanum peruvianum s.l. species complex

artículo científico publicado en 2014

Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

artículo científico publicado en 2020

Genome sequencing and analysis of the model grass Brachypodium distachyon

artículo científico publicado en 2010

Graph pangenome captures missing heritability and empowers tomato breeding

artículo científico publicado en 2022

High density genotype storage for plant breeding in the Chado schema of Breedbase

artículo científico publicado en 2020

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

artículo científico publicado en 2018

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

artículo científico publicado en 2017

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

artículo científico publicado en 2019

Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae)

scientific article published on 07 April 2020

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

artículo científico publicado en 2016

Large-scale GWAS using historical data identifies a conserved genetic architecture of cyanogenic glucosides content in cassava (Manihot esculenta Crantz.) root

artículo científico publicado en 2020

Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato

artículo científico publicado en 2017

Linking the potato genome to the conserved ortholog set (COS) markers

artículo científico publicado en 2013

Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with "Candidatus Liberibacter asiaticus"

artículo científico publicado en 2020

Longitudinal transcriptomic, proteomic, and metabolomic analysis of Citrus limon response to graft inoculation by 'Candidatus Liberibacter asiaticus'

scientific article published on 27 April 2020

MetaCyc and AraCyc. Metabolic pathway databases for plant research

artículo científico

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

artículo científico publicado en 2004

Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook

scientific article published on 14 July 2020

Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

scientific article published on 17 January 2020

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum)

scientific article published on 30 September 2019

Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica

artículo científico publicado en 2017

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

artículo científico publicado en 2019

Plant Metabolic Pathways in MetaCyc and SolCyc

article

Querying and computing with BioCyc databases

artículo científico publicado en 2005

Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding.

artículo científico publicado en 2017

Reinterpretation of 'sperm pump' or 'sperm syringe' function with notes on other male internal reproductive organs in the Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae)

artículo científico publicado en 2020

Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection

scientific article published on 01 March 2019

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota) ⬇️

artículo científico publicado el 24 de mayo de 2012

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

artículo científico publicado en 2018

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.

artículo científico publicado en 2018

The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits

artículo científico publicado en 2011

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

artículo científico publicado en 2003

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data

artículo científico publicado en 2011

The Genome Database for Rosaceae (GDR): year 10 update

artículo científico publicado en 2013

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

artículo científico publicado en 2013

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

artículo científico publicado en 2010

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases ⬇️

artículo científico publicado en 2012

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

artículo científico publicado en 2015

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

artículo científico publicado en 2020

The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics.

artículo científico publicado en 2014

The SGN comparative map viewer

artículo científico publicado en 2008

The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond

artículo científico

The Sol Genomics Network (SGN)--from genotype to phenotype to breeding

artículo científico publicado en 2014

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

artículo científico publicado en 2010

The Tomato Expression Atlas.

artículo científico publicado en 2017

The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

artículo científico publicado en 2005

The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago

artículo científico publicado en 2021

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

artículo científico publicado en 2012

The tomato kinome and the tomato kinase library ORFeome: novel resources for the study of kinases and signal transduction in tomato and solanaceae species

artículo científico publicado en 2014

TobEA: an atlas of tobacco gene expression from seed to senescence

artículo científico publicado en 2010

Transcriptomic Analysis of L. Roots during the Early Infection Process.

artículo científico publicado en 2017

Transcriptomic analysis of cultivated cotton Gossypium hirsutum provides insights into host responses upon whitefly-mediated transmission of cotton leaf curl disease

article

Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum

artículo científico publicado en 2017

solGS: a web-based tool for genomic selection

artículo científico publicado en 2014

solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database ⬇️

artículo científico publicado el 21 de octubre de 2010

Lista de obras de

A community-based annotation framework for linking solanaceae genomes with phenomes

A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research

A dynamic interface for capsaicinoid systems biology.

A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz)

A quick guide for student-driven community genome annotation

An Endophyte Constructs Fungicide-Containing Extracellular Barriers for Its Host Plant.

An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

Analysis of Ultra Low Genome Conservation in Clostridium difficile ⬇️

Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins

Asian citrus psyllid stylet morphology and applicability to the model for inter-instar stylet replacement in the potato psyllid

Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L).

BrAPI-an application programming interface for plant breeding applications

Breedbase: a digital ecosystem for modern plant breeding

Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? – A Case Study With Hydrogen Cyanide in Cassava

Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages

Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts

Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut.

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato

Comparative analysis of Cucurbita pepo metabolism throughout fruit development in acorn squash and oilseed pumpkin

Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives

Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression

Comprehensive genotyping of a Brazilian cassava (Manihot esculenta Crantz) germplasm bank: insights into diversification and domestication

Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

Correction to: Current status and impending progress for cassava structural genomics

Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants

Current status and impending progress for cassava structural genomics

De Novo Genome Sequence Assembly of Dwarf Coconut (Cocos nucifera L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species

De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus.

De-novo assembly of zucchini genome reveals a whole genome duplication associated with the origin of theCucurbitagenus

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts

Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta).

Dissecting Tissue-Specific Transcriptomic Responses from Leaf and Roots under Salt Stress in Petunia hybrida Mitchell.

Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae

Draft Genome Sequence Resource of the Citrus Stem-End Rot Fungal Pathogen Lasiodiplodia theobromae CITRA15

Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays

EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot

Enabling proteomic studies with RNA‐Seq: The proteome of tomato pollen as a test case ⬇️

Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome

Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

Floral gene resources from basal angiosperms for comparative genomics research

From manual curation to visualization of gene families and networks across Solanaceae plant species

Genes conserved for arbuscular mycorrhizal symbiosis identified through phylogenomics.

Genetic structure of the four wild tomato species in the Solanum peruvianum s.l. species complex

Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

Genome sequencing and analysis of the model grass Brachypodium distachyon

Graph pangenome captures missing heritability and empowers tomato breeding

High density genotype storage for plant breeding in the Chado schema of Breedbase

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae)

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

Large-scale GWAS using historical data identifies a conserved genetic architecture of cyanogenic glucosides content in cassava (Manihot esculenta Crantz.) root

Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato

Linking the potato genome to the conserved ortholog set (COS) markers

Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with "Candidatus Liberibacter asiaticus"

Longitudinal transcriptomic, proteomic, and metabolomic analysis of Citrus limon response to graft inoculation by 'Candidatus Liberibacter asiaticus'

MetaCyc and AraCyc. Metabolic pathway databases for plant research

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook

Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum)

Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

Plant Metabolic Pathways in MetaCyc and SolCyc

Querying and computing with BioCyc databases

Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding.

Reinterpretation of 'sperm pump' or 'sperm syringe' function with notes on other male internal reproductive organs in the Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae)

Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota) ⬇️

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.

The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data