Lista de obras -

A Tale of Two Chains: Geometries of a Chain Model and Protein Native State Structures

artículo científico publicado en 2024

A backbone-based theory of protein folding

artículo científico publicado en 2006

A comment on the protein folds as platonic forms

scientific article published on 01 July 2003

A general basis for quarter-power scaling in animals

artículo científico publicado en 2010

A non-equilibrium percolation transition in random Ising ferromagnets

Absence of detailed balance in ecology

Amino acid interaction preferences in proteins

artículo científico publicado en 2010

An allometry-based approach for understanding forest structure, predicting tree-size distribution and assessing the degree of disturbance

artículo científico publicado en 2013

Anisotropic effective interactions in a coarse-grained tube picture of proteins.

artículo científico publicado en 2002

Applications of the principle of maximum entropy: from physics to ecology

artículo científico publicado en 2010

Assembly of protein tertiary structures from secondary structures using optimized potentials

artículo científico publicado en 2003

Chain stiffness bridges conventional polymer and bio-molecular phases

artículo científico publicado en 2019

Comment on "Computational improvements reveal great bacterial diversity and high metal toxicity in soil"

artículo científico publicado en 2006

Comment on "Revising the distributive networks models of West, Brown and Enquist (1997) and Banavar, Maritan and Rinaldo (1999): Metabolic inequity of living tissues provides clues for the observed allometric scaling rules" by Makarieva, Gorshkov an

artículo científico publicado en 2005

Common attributes of native-state structures of proteins, disordered proteins, and amyloid.

artículo científico publicado en 2006

Comparing models of species abundance (Reply)

artículo científico publicado en 2006

Density dependence explains tree species abundance and diversity in tropical forests

artículo científico publicado en 2005

Diffusion, peer pressure, and tailed distributions

artículo científico publicado en 2002

Dynamical evolution of ecosystems

artículo científico publicado en 2006

Dynamics of nanoscale droplets

artículo científico publicado en 2002

Ecology: Towards a theory of biodiversity

artículo científico publicado en 2009

Effect of localization on the stability of mutualistic ecological networks

artículo científico publicado en 2015

Effects of pore walls and randomness on phase transitions in porous media

artículo científico publicado en 2002

Emergence of secondary motifs in tubelike polymers in a solvent

Emergence of structural and dynamical properties of ecological mutualistic networks

artículo científico publicado en 2013

Energy landscape and dynamics of proteins: an exact analysis of a simplified lattice model.

artículo científico publicado en 2013

Evolution and selection of river networks: statics, dynamics, and complexity

artículo científico publicado en 2014

Extensional rupture of model non-Newtonian fluid filaments

artículo científico publicado en 2003

Feasibility and coexistence of large ecological communities

artículo científico publicado en 2017

First-principles design of nanomachines

scholarly article

Form, function, and evolution of living organisms

artículo científico publicado en 2014

From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells

artículo científico publicado en 2013

From toroidal to rod-like condensates of semiflexible polymers ⬇️

artículo científico publicado en 2014

Geometrical model for the native-state folds of proteins

artículo científico publicado en 2004

Geometry and physics of proteins.

artículo científico publicado en 2002

Geometry and symmetry presculpt the free-energy landscape of proteins

artículo científico publicado en 2004

Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes.

artículo científico publicado en 2006

Incipient criticality in ecological communities

artículo científico publicado en 2008

Inference of the solvation energy parameters of amino acids using maximum entropy approach

Inferring species interactions in tropical forests

artículo científico publicado en 2009

Information-based fitness and the emergence of criticality in living systems

artículo científico publicado en 2014

Lattice tube model of proteins.

artículo científico publicado en 2004

Linear One-Step Processes with Artificial Boundaries

article by Sandro Azaele et al published 13 September 2006 in Journal of Statistical Physics

Local symmetry determines the phases of linear chains: a simple model for the self-assembly of peptides

artículo científico publicado en 2019

Marginal compactness of protein native structures

Master Equation Approach to Protein Folding and Kinetic Traps

artículo científico publicado en 1998

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

artículo científico publicado en 2008

Molecular dynamics of immiscible fluids in chemically patterned nanochannels

artículo científico publicado en 2008

Molecular dynamics simulations of crystallization of hard spheres.

artículo científico publicado en 2002

Nanoscale fluid flows in the vicinity of patterned surfaces

scientific article published on 23 March 2006

Network structures from selection principles

artículo científico publicado en 2004

Neutral theory and relative species abundance in ecology

artículo científico publicado en 2003

Neutral theory: the stability of forest biodiversity

artículo científico publicado en 2004

On network form and function

Ontogenetic growth: Modelling universality and scaling.

artículo científico publicado en 2002

Organization of ecosystems in the vicinity of a novel phase transition.

artículo científico publicado en 2004

Patterns of relative species abundance in rainforests and coral reefs

artículo científico publicado en 2007

Phase diagram of the ground states of DNA condensates ⬇️

artículo científico publicado en 2015

Physics of proteins

artículo científico publicado en 2007

Physics of thick polymers

Physiology: Allometric cascades.

artículo científico publicado en 2003

Prediction of protein secondary structures from conformational biases.

artículo científico publicado en 2002

Probing noise in gene expression and protein production ⬇️

article

Protein structure and folding - simplicity within complexity

artículo científico publicado en 2013

Proteins and polymers

artículo científico publicado en 2005

Publisher Correction: Feasibility and coexistence of large ecological communities

scientific article published in Nature Communications

Quantitative descriptions of generalized arousal, an elementary function of the vertebrate brain ⬇️

artículo científico publicado el 9 de mayo de 2011

Recognition of coarse-grained protein tertiary structure

artículo científico publicado en 2004

Scale invariance in the dynamics of spontaneous behavior

artículo científico publicado en 2012

Scale-free behavior and universality in random fragmentation and aggregation.

artículo científico publicado en 2004

Scaling in ecosystems and the linkage of macroecological laws

artículo científico publicado en 2007

Seeing the forest for the trees through metabolic scaling

Self-similarity and scaling in forest communities

artículo científico publicado en 2010

Sequence repeats and protein structure.

artículo científico publicado en 2012

Slip, immiscibility, and boundary conditions at the liquid-liquid interface

scientific article published on 02 February 2006

Spatial aggregation and the species–area relationship across scales

article

Spatial scaling in model plant communities

artículo científico publicado en 2005

Spontaneously broken neutral symmetry in an ecological system. ⬇️

artículo científico publicado en 2012

Stationary self-organized fractal structures in an open, dissipative electrical system

article by Marco Marani et al published 8 May 1998 in Journal of Physics A

Statistical mechanics of ecological systems: Neutral theory and beyond ⬇️

Structural motifs of biomolecules

artículo científico publicado en 2007

Supply-demand balance and metabolic scaling

artículo científico publicado en 2002

Symmetry, shape, and order

artículo científico publicado en 2007

System size expansion for systems with an absorbing state ⬇️

artículo científico publicado en 2011

The Widened Pipe Model of plant hydraulic evolution

artículo científico publicado en 2021

The elixir phase of chain molecules

artículo científico publicado en 2018

Towards a unified descriptive theory for spatial ecology: predicting biodiversity patterns across spatial scales ⬇️

article

True scale-free networks hidden by finite size effects

artículo científico publicado en 2021

Uncovering Phenotypes with Supercells: Applications to Single-Cell Sequencing

Uncovering low-dimensional, miR-based signatures of acute myeloid and lymphoblastic leukemias with a machine-learning-driven network approach

artículo científico publicado en 2015

Understanding health and disease with multidimensional single-cell methods

artículo científico publicado en 2014

Unified perspective on proteins: a physics approach.

artículo científico publicado en 2004

Upscaling species richness and abundances in tropical forests. ⬇️

artículo científico publicado en 2017

Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns

artículo científico publicado en 2006

What can one learn from experiments about the elusive transition state?

artículo científico publicado en 2004

What determines the spectrum of protein native state structures?

artículo científico publicado en 2006

What determines the structures of native folds of proteins?

reply: Rivers, blood and transportation networks

artículo científico publicado en 2000

Lista de obras de

A Tale of Two Chains: Geometries of a Chain Model and Protein Native State Structures

A backbone-based theory of protein folding

A comment on the protein folds as platonic forms

A general basis for quarter-power scaling in animals

A non-equilibrium percolation transition in random Ising ferromagnets

Absence of detailed balance in ecology

Amino acid interaction preferences in proteins

An allometry-based approach for understanding forest structure, predicting tree-size distribution and assessing the degree of disturbance

Anisotropic effective interactions in a coarse-grained tube picture of proteins.

Applications of the principle of maximum entropy: from physics to ecology

Assembly of protein tertiary structures from secondary structures using optimized potentials

Chain stiffness bridges conventional polymer and bio-molecular phases

Comment on "Computational improvements reveal great bacterial diversity and high metal toxicity in soil"

Comment on "Revising the distributive networks models of West, Brown and Enquist (1997) and Banavar, Maritan and Rinaldo (1999): Metabolic inequity of living tissues provides clues for the observed allometric scaling rules" by Makarieva, Gorshkov an

Common attributes of native-state structures of proteins, disordered proteins, and amyloid.

Comparing models of species abundance (Reply)

Density dependence explains tree species abundance and diversity in tropical forests

Diffusion, peer pressure, and tailed distributions

Dynamical evolution of ecosystems

Dynamics of nanoscale droplets

Ecology: Towards a theory of biodiversity

Effect of localization on the stability of mutualistic ecological networks

Effects of pore walls and randomness on phase transitions in porous media

Emergence of secondary motifs in tubelike polymers in a solvent

Emergence of structural and dynamical properties of ecological mutualistic networks

Energy landscape and dynamics of proteins: an exact analysis of a simplified lattice model.

Evolution and selection of river networks: statics, dynamics, and complexity

Extensional rupture of model non-Newtonian fluid filaments

Feasibility and coexistence of large ecological communities

First-principles design of nanomachines

Form, function, and evolution of living organisms

From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells

From toroidal to rod-like condensates of semiflexible polymers ⬇️

Geometrical model for the native-state folds of proteins

Geometry and physics of proteins.

Geometry and symmetry presculpt the free-energy landscape of proteins

Geometry of proteins: hydrogen bonding, sterics, and marginally compact tubes.

Incipient criticality in ecological communities

Inference of the solvation energy parameters of amino acids using maximum entropy approach

Inferring species interactions in tropical forests

Information-based fitness and the emergence of criticality in living systems

Lattice tube model of proteins.

Linear One-Step Processes with Artificial Boundaries

Local symmetry determines the phases of linear chains: a simple model for the self-assembly of peptides

Marginal compactness of protein native structures

Master Equation Approach to Protein Folding and Kinetic Traps

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

Molecular dynamics of immiscible fluids in chemically patterned nanochannels

Molecular dynamics simulations of crystallization of hard spheres.

Nanoscale fluid flows in the vicinity of patterned surfaces

Network structures from selection principles

Neutral theory and relative species abundance in ecology

Neutral theory: the stability of forest biodiversity

On network form and function

Ontogenetic growth: Modelling universality and scaling.

Organization of ecosystems in the vicinity of a novel phase transition.

Patterns of relative species abundance in rainforests and coral reefs

Phase diagram of the ground states of DNA condensates ⬇️

Physics of proteins

Physics of thick polymers

Physiology: Allometric cascades.

Prediction of protein secondary structures from conformational biases.

Probing noise in gene expression and protein production ⬇️

Protein structure and folding - simplicity within complexity

Proteins and polymers

Publisher Correction: Feasibility and coexistence of large ecological communities

Quantitative descriptions of generalized arousal, an elementary function of the vertebrate brain ⬇️

Recognition of coarse-grained protein tertiary structure

Scale invariance in the dynamics of spontaneous behavior

Scale-free behavior and universality in random fragmentation and aggregation.

Scaling in ecosystems and the linkage of macroecological laws

Seeing the forest for the trees through metabolic scaling

Self-similarity and scaling in forest communities

Sequence repeats and protein structure.

Slip, immiscibility, and boundary conditions at the liquid-liquid interface

Spatial aggregation and the species–area relationship across scales

Spatial scaling in model plant communities

Spontaneously broken neutral symmetry in an ecological system. ⬇️

Stationary self-organized fractal structures in an open, dissipative electrical system