Lista de obras -

A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny

artículo científico publicado en 2016

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

artículo científico publicado en 2010

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of active enhancers across human cell types and tissues

artículo científico publicado en 2014

An atlas of combinatorial transcriptional regulation in mouse and man

artículo científico publicado en 2010

An atlas of human long non-coding RNAs with accurate 5' ends.

artículo científico publicado en 2017

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

artículo científico publicado en 2015

Beyond the FANTOM4.

artículo científico publicado en 2010

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

artículo científico publicado en 2010

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

artículo científico publicado en 2014

Clusters of internally primed transcripts reveal novel long noncoding RNAs

artículo científico publicado en 2006

Complex Loci in human and mouse genomes

artículo científico publicado en 2006

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

artículo científico publicado en 2012

Constructing ORFeome resources with removable termination codons

artículo científico publicado en 2006

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

article

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

artículo científico publicado en 2010

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

scholarly article published in Nature Genetics

Corrigendum: Tiny RNAs associated with transcription start sites in animals

scholarly article published in Nature Genetics

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

artículo científico publicado en 2010

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

artículo científico publicado en 2009

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

artículo científico publicado en 2014

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

artículo científico publicado en 2008

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

artículo científico publicado en 2021

Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides

artículo científico publicado en 2007

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

artículo científico publicado en 2005

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

artículo científico publicado en 2009

FANTOM5 CAGE profiles of human and mouse samples

artículo científico

Functional annotation of human long noncoding RNAs via molecular phenotyping

artículo científico publicado en 2020

Genome-wide analysis of mammalian promoter architecture and evolution

artículo científico publicado en 2006

Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.

artículo científico publicado en 2004

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action

artículo científico publicado en 2005

LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression

artículo científico publicado en 2006

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

artículo científico publicado en 2015

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

artículo científico publicado en 2009

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

artículo científico publicado en 2009

Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes

artículo científico publicado en 2016

Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells

artículo científico publicado en 2011

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

artículo científico publicado en 2014

Prevention of hepatocellular carcinoma by targeting MYCN-positive liver cancer stem cells with acyclic retinoid

artículo científico publicado en 2018

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

artículo científico publicado en 2005

Recounting the FANTOM CAGEAssociated Transcriptome

scientific article published on 20 February 2020

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

artículo científico publicado en 2015

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

artículo científico publicado en 2010

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

artículo científico publicado en 2009

Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly

artículo científico publicado en 2009

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

artículo científico publicado en 2018

Single-Nucleotide Resolution Mapping of Hepatitis B Virus Promoters in Infected Human Livers and Hepatocellular Carcinoma

artículo científico publicado en 2016

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

artículo científico publicado en 2019

Solution structure of a BolA-like protein from Mus musculus

artículo científico publicado en 2004

Subcellular Localization of Mammalian Type II Membrane Proteins

artículo científico publicado en 2006

Temporal dynamics and transcriptional control using single-cell gene expression analysis

artículo científico publicado en 2013

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

scientific article published on 19 April 2009

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

artículo científico publicado en 2010

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations

artículo científico

The regulated retrotransposon transcriptome of mammalian cells

artículo científico publicado en 2009

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

artículo científico publicado en 2009

Tiny RNAs associated with transcription start sites in animals

artículo científico publicado en 2009

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

artículo científico publicado en 2015

Transcription and enhancer profiling in human monocyte subsets

artículo científico publicado en 2014

Transcriptional features of genomic regulatory blocks

artículo científico publicado en 2009

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

artículo científico publicado en 2018

Transcriptional network dynamics in macrophage activation

artículo científico

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

artículo científico publicado en 2017

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

artículo científico publicado en 2010

Lista de obras de

A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

An atlas of active enhancers across human cell types and tissues

An atlas of combinatorial transcriptional regulation in mouse and man

An atlas of human long non-coding RNAs with accurate 5' ends.

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

Beyond the FANTOM4.

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

Clusters of internally primed transcripts reveal novel long noncoding RNAs

Complex Loci in human and mouse genomes

Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

Constructing ORFeome resources with removable termination codons

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

Corrigendum: Tiny RNAs associated with transcription start sites in animals

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

FANTOM5 CAGE profiles of human and mouse samples

Functional annotation of human long noncoding RNAs via molecular phenotyping

Genome-wide analysis of mammalian promoter architecture and evolution

Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action

LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes

Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Prevention of hepatocellular carcinoma by targeting MYCN-positive liver cancer stem cells with acyclic retinoid

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

Recounting the FANTOM CAGEAssociated Transcriptome

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

Single-Nucleotide Resolution Mapping of Hepatitis B Virus Promoters in Infected Human Livers and Hepatocellular Carcinoma

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians

Solution structure of a BolA-like protein from Mus musculus

Subcellular Localization of Mammalian Type II Membrane Proteins

Temporal dynamics and transcriptional control using single-cell gene expression analysis

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations

The regulated retrotransposon transcriptome of mammalian cells

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Tiny RNAs associated with transcription start sites in animals

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Transcription and enhancer profiling in human monocyte subsets

Transcriptional features of genomic regulatory blocks

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

Transcriptional network dynamics in macrophage activation

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation