Lista de obras -

A model for the role of gut bacteria in the development of autoimmunity for type 1 diabetes

artículo científico publicado en 2015

Accelerating STEM education reform: linked communities of practice promote creation of open educational resources and sustainable professional development

artículo científico publicado en 2023

Antibiotics Effects on the Fecal Metabolome in Preterm Infants

artículo científico publicado en 2020

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants

artículo científico publicado en 2021

Aquitalea magnusonii gen. nov., sp. nov., a novel Gram-negative bacterium isolated from a humic lake

artículo científico publicado en 2006

Association Between Early-Life Antibiotic Use and the Risk of Islet or Celiac Disease Autoimmunity

artículo científico publicado en 2017

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

artículo científico publicado en 2014

Barriers to Integration of Bioinformatics into Undergraduate Life Sciences Education

article

Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncover significant barriers to integrating bioinformatics into undergraduate instruction

artículo científico publicado en 2019

Bioinformatics Core Competencies for Undergraduate Life Sciences Education

article

Bioinformatics core competencies for undergraduate life sciences education.

artículo científico publicado en 2018

Broadening Participation of Women and Underrepresented Minorities in STEM through a Hybrid Online Transfer Program.

artículo científico publicado en 2016

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

artículo científico publicado en 2013

Characterization of ciliate diversity in bromeliad tank waters from the Brazilian Atlantic Forest.

artículo científico publicado en 2017

Characterization of the Relative Abundance of the Citrus Pathogen Ca. Liberibacter Asiaticus in the Microbiome of Its Insect Vector, Diaphorina citri, using High Throughput 16S rRNA Sequencing.

artículo científico publicado en 2012

Coal mining practices reduce the microbial biomass, richness and diversity of soil

artículo científico publicado en 2016

Community development, implementation, and assessment of a NIBLSE bioinformatics sequence similarity learning resource

artículo científico publicado en 2021

Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter

artículo científico publicado en 2014

Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)

artículo científico publicado en 2013

Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592 ⬇️

artículo científico publicado el 15 de agosto de 2013

Complete Genome Sequences of Lactobacillus johnsonii Strain N6.2 and Lactobacillus reuteri Strain TD1.

artículo científico publicado en 2014

Complete genome of the onion pathogen Enterobacter cloacae EcWSU1

artículo científico publicado en 2011

Complete genome of the switchgrass endophyte Enterobacter clocace P101.

artículo científico publicado en 2014

Complete genome sequence of Liberibacter crescens BT-1 ⬇️

artículo científico publicado el 12 de diciembre de 2012

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice

artículo científico publicado en 2008

Compromised gut microbiota networks in children with anti-islet cell autoimmunity

artículo científico publicado en 2014

Confirmation of the sequence of 'Candidatus Liberibacter asiaticus' and assessment of microbial diversity in Huanglongbing-infected citrus phloem using a metagenomic approach

artículo científico publicado en 2009

Construction of Stable Fluorescent Reporter Plasmids for Use in Staphylococcus aureus

artículo científico publicado en 2017

Contamination Is Not Linked to the Gestational Microbiome

scientific article published on 17 September 2019

Correction: Hepatic glycogen storage diseases are associated to microbial dysbiosis

scientific article published on 06 June 2019

Corrigendum: Integrating DNA Methylation and Gene Expression Data in the Development of the Soybean-Bradyrhizobium N2-Fixing Symbiosis

artículo científico publicado en 2016

Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model.

artículo científico publicado en 2009

Depression phenotype identified by using single nucleotide exact amplicon sequence variants of the human gut microbiome

scientific article published on 27 January 2020

Detection of homoserine lactone-like quorum sensing molecules in bradyrhizobium strains.

artículo científico publicado en 2005

Development of Chemically Defined Media Reveals Citrate as Preferred Carbon Source for Liberibacter Growth

artículo científico publicado en 2018

Development of a distance education program by a Land-Grant University augments the 2-year to 4-year STEM pipeline and increases diversity in STEM.

artículo científico publicado en 2015

Distantly sampled soils carry few species in common.

artículo científico publicado en 2008

Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica

artículo científico publicado en 2014

Diversidade de bactérias diazotróficas endofíticas associadas a plantas de milho

artículo científico publicado en 2007

Drivers of archaeal ammonia-oxidizing communities in soil ⬇️

artículo científico publicado el 15 de junio de 2012

Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes

artículo científico publicado en 2014

Efficiency of Deamidated Gliadin Peptides for Screening Celiac Disease Autoimmunity-Reply

artículo científico publicado en 2018

Expression of a crown gall biological control phenotype in an avirulent strain of Agrobacterium vitis by addition of the trifolitoxin production and resistance genes

artículo científico publicado en 2002

Factors That Increase Risk of Celiac Disease Autoimmunity After a Gastrointestinal Infection in Early Life

artículo científico publicado en 2016

Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome

scientific article published on 09 August 2019

Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea

artículo científico publicado en 2014

Geographic and environmental sources of variation in lake bacterial community composition

artículo científico publicado en 2005

Growth parameters of Liberibacter crescens suggest ammonium and phosphate as essential molecules in the Liberibacter-plant host interface

scientific article published on 12 October 2019

Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes

artículo científico publicado en 2011

Hepatic glycogen storage diseases are associated to microbial dysbiosis

scientific article published on 02 April 2019

Identification of the Genes Required for the Culture of Liberibacter crescens, the Closest Cultured Relative of the Liberibacter Plant Pathogens

artículo científico publicado en 2016

Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life science education

artículo científico publicado en 2020

Influence of fecal sample storage on bacterial community diversity.

artículo científico publicado en 2009

Inhibition of type 1 diabetes correlated to a Lactobacillus johnsonii N6.2-mediated Th17 bias

artículo científico publicado en 2011

Integrating DNA Methylation and Gene Expression Data in the Development of the Soybean-Bradyrhizobium N2-Fixing Symbiosis

artículo científico publicado en 2016

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes

artículo científico publicado en 2021

Interactions between specific phytoplankton and bacteria affect lake bacterial community succession.

artículo científico publicado en 2013

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

article

Kinetics and strain specificity of rhizosphere and endophytic colonization by enteric bacteria on seedlings of Medicago sativa and Medicago truncatula.

artículo científico publicado en 2003

Lablab Purpureus Influences Soil Fertility and Microbial Diversity in a Tropical Maize-Based No-Tillage System

scholarly article

Lactobacillus johnsonii N6.2 mitigates the development of type 1 diabetes in BB-DP rats

artículo científico publicado en 2010

Liberibacter crescens gen. nov., sp. nov., the first cultured member of the genus Liberibacter

artículo científico publicado en 2014

Meconium microbiome analysis identifies bacteria correlated with premature birth

artículo científico publicado en 2014

Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.

artículo científico publicado en 2017

Microbial communities and their interactions in soil and rhizosphere ecosystems.

artículo científico publicado en 2002

Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes

artículo científico publicado en 2006

Microbial hitchhikers on intercontinental dust: catching a lift in Chad

artículo científico publicado en 2013

Microbial hitchhikers on intercontinental dust: high-throughput sequencing to catalogue microbes in small sand samples

article

NIBLSE: A Network for Integrating Bioinformatics into Life Sciences Education

artículo científico publicado en 2015

Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil

artículo científico publicado en 2023

Nitrogen fixation in wheat provided by Klebsiella pneumoniae 342.

artículo científico publicado en 2004

Non-lethal growth inhibition by arresting the starch utilization system of clinically relevant human isolates of Bacteroides dorei

scientific article published on 05 July 2019

On the role of gut bacteria and infant diet in the development of autoimmunity for type 1 diabetes. Reply to Hänninen ALM and Toivonen RK [letter].

artículo científico publicado en 2015

PANGEA: pipeline for analysis of next generation amplicons

artículo científico publicado en 2010

Plants as a habitat for beneficial and/or human pathogenic bacteria

artículo científico publicado en 2008

Post-hypoxia Invasion of the fetal brain by multidrug resistant Staphylococcus

artículo científico publicado en 2017

Proof of principle: Physiological transfer of small numbers of bacteria from mother to fetus in late-gestation pregnant sheep

scientific article published on 06 June 2019

Proposal to rename Carnobacterium inhibens as Carnobacterium inhibens subsp. inhibens subsp. nov. and description of Carnobacterium inhibens subsp. gilichinskyi subsp. nov., a psychrotolerant bacterium isolated from Siberian permafrost

artículo científico publicado en 2014

Pyrosequencing enumerates and contrasts soil microbial diversity

artículo científico publicado en 2007

Regulation of enteric endophytic bacterial colonization by plant defenses.

artículo científico publicado en 2005

Relationship between honeybee nutrition and their microbial communities.

artículo científico publicado en 2015

Remarkably Complex Microbial Community Composition in Bromeliad Tank Waters Revealed by eDNA Metabarcoding

scientific article published on 20 June 2020

Rethinking microbial diversity analysis in the high throughput sequencing era.

artículo científico publicado en 2011

Role of tfxE, but not tfxG, in trifolitoxin resistance

artículo científico publicado en 2002

Routine Early Antibiotic Use in SymptOmatic Preterm Neonates (REASON): A Pilot Randomized Controlled Trial

scientific article published on 23 September 2020

Runella zeae sp. nov., a novel gram-negative bacterium from the stems of surface-sterilized Zea mays

artículo científico publicado en 2002

Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands.

artículo científico publicado en 2018

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

artículo científico publicado en 2012

Soil pH determines microbial diversity and composition in the park grass experiment.

artículo científico publicado en 2014

Successful Integration of Face-to-Face Bootcamp Lab Courses in a Hybrid Online STEM Program

artículo científico publicado en 2019

Superinfection exclusion by Citrus tristeza virus does not correlate with the production of viral small RNAs

artículo científico publicado en 2014

Synchrony in aquatic microbial community dynamics

article

TWO APPLICATIONS OF PERMUTATION TESTS IN BIOSTASTICS

artículo científico publicado en 2013

Temporal changes in gastrointestinal fungi and the risk of autoimmunity during early childhood: the TEDDY study

artículo científico publicado en 2022

The beneficial plant growth-promoting association of Rhizobium leguminosarum bv. trifolii with rice roots

article

The intestinal microbiome: relationship to type 1 diabetes

artículo científico publicado en 2010

The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei

artículo científico publicado en 2014

There Is More than Multiple Choice: Crowd-Sourced Assessment Tips for Online, Hybrid, and Face-to-Face Environments

artículo científico publicado en 2021

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

artículo científico publicado en 2014

Toward defining the autoimmune microbiome for type 1 diabetes

artículo científico publicado en 2011

Towards a functional hypothesis relating anti-islet cell autoimmunity to the dietary impact on microbial communities and butyrate production

artículo científico publicado en 2016

Transfer of oral bacteria to the fetus during late gestation

artículo científico publicado en 2021

Trifolitoxin Production in <i>Rhizobium etli</i> Strain CE3 Increases Competitiveness for Rhizosphere Colonization and Root Nodulation of <i>Phaseolus vulgaris</i> in Soil ⬇️

scholarly article

Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission

artículo científico publicado en 2010

Unamplified, Long-Read Metagenomic Sequencing Approach to Close Endosymbiont Genomes of Low-Biomass Insect Populations

artículo científico publicado en 2022

Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities

artículo científico publicado en 2003

Whole genome sequencing in the undergraduate classroom: outcomes and lessons from a pilot course ⬇️

artículo científico publicado el 17 de diciembre de 2008

Whole-genome sequencing and phenotypic analysis of Bacillus subtilis mutants following evolution under conditions of relaxed selection for sporulation

artículo científico publicado en 2011

Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales.

artículo científico publicado en 2004

pime: A package for discovery of novel differences among microbial communities

scientific article published on 02 December 2019

Lista de obras de

A model for the role of gut bacteria in the development of autoimmunity for type 1 diabetes

Accelerating STEM education reform: linked communities of practice promote creation of open educational resources and sustainable professional development

Antibiotics Effects on the Fecal Metabolome in Preterm Infants

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants

Aquitalea magnusonii gen. nov., sp. nov., a novel Gram-negative bacterium isolated from a humic lake

Association Between Early-Life Antibiotic Use and the Risk of Islet or Celiac Disease Autoimmunity

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes

Barriers to Integration of Bioinformatics into Undergraduate Life Sciences Education

Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncover significant barriers to integrating bioinformatics into undergraduate instruction

Bioinformatics Core Competencies for Undergraduate Life Sciences Education

Bioinformatics core competencies for undergraduate life sciences education.

Broadening Participation of Women and Underrepresented Minorities in STEM through a Hybrid Online Transfer Program.

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

Characterization of ciliate diversity in bromeliad tank waters from the Brazilian Atlantic Forest.

Characterization of the Relative Abundance of the Citrus Pathogen Ca. Liberibacter Asiaticus in the Microbiome of Its Insect Vector, Diaphorina citri, using High Throughput 16S rRNA Sequencing.

Coal mining practices reduce the microbial biomass, richness and diversity of soil

Community development, implementation, and assessment of a NIBLSE bioinformatics sequence similarity learning resource

Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter

Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)

Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592 ⬇️

Complete Genome Sequences of Lactobacillus johnsonii Strain N6.2 and Lactobacillus reuteri Strain TD1.

Complete genome of the onion pathogen Enterobacter cloacae EcWSU1

Complete genome of the switchgrass endophyte Enterobacter clocace P101.

Complete genome sequence of Liberibacter crescens BT-1 ⬇️

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice

Compromised gut microbiota networks in children with anti-islet cell autoimmunity

Confirmation of the sequence of 'Candidatus Liberibacter asiaticus' and assessment of microbial diversity in Huanglongbing-infected citrus phloem using a metagenomic approach

Construction of Stable Fluorescent Reporter Plasmids for Use in Staphylococcus aureus

Contamination Is Not Linked to the Gestational Microbiome

Correction: Hepatic glycogen storage diseases are associated to microbial dysbiosis

Corrigendum: Integrating DNA Methylation and Gene Expression Data in the Development of the Soybean-Bradyrhizobium N2-Fixing Symbiosis

Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model.

Depression phenotype identified by using single nucleotide exact amplicon sequence variants of the human gut microbiome

Detection of homoserine lactone-like quorum sensing molecules in bradyrhizobium strains.

Development of Chemically Defined Media Reveals Citrate as Preferred Carbon Source for Liberibacter Growth

Development of a distance education program by a Land-Grant University augments the 2-year to 4-year STEM pipeline and increases diversity in STEM.

Distantly sampled soils carry few species in common.

Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica

Diversidade de bactérias diazotróficas endofíticas associadas a plantas de milho

Drivers of archaeal ammonia-oxidizing communities in soil ⬇️

Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes

Efficiency of Deamidated Gliadin Peptides for Screening Celiac Disease Autoimmunity-Reply

Expression of a crown gall biological control phenotype in an avirulent strain of Agrobacterium vitis by addition of the trifolitoxin production and resistance genes

Factors That Increase Risk of Celiac Disease Autoimmunity After a Gastrointestinal Infection in Early Life

Genetic risk for autoimmunity is associated with distinct changes in the human gut microbiome

Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea

Geographic and environmental sources of variation in lake bacterial community composition

Growth parameters of Liberibacter crescens suggest ammonium and phosphate as essential molecules in the Liberibacter-plant host interface

Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes

Hepatic glycogen storage diseases are associated to microbial dysbiosis

Identification of the Genes Required for the Culture of Liberibacter crescens, the Closest Cultured Relative of the Liberibacter Plant Pathogens

Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life science education

Influence of fecal sample storage on bacterial community diversity.

Inhibition of type 1 diabetes correlated to a Lactobacillus johnsonii N6.2-mediated Th17 bias

Integrating DNA Methylation and Gene Expression Data in the Development of the Soybean-Bradyrhizobium N2-Fixing Symbiosis

Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes

Interactions between specific phytoplankton and bacteria affect lake bacterial community succession.

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

Kinetics and strain specificity of rhizosphere and endophytic colonization by enteric bacteria on seedlings of Medicago sativa and Medicago truncatula.

Lablab Purpureus Influences Soil Fertility and Microbial Diversity in a Tropical Maize-Based No-Tillage System

Lactobacillus johnsonii N6.2 mitigates the development of type 1 diabetes in BB-DP rats

Liberibacter crescens gen. nov., sp. nov., the first cultured member of the genus Liberibacter

Meconium microbiome analysis identifies bacteria correlated with premature birth

Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.

Microbial communities and their interactions in soil and rhizosphere ecosystems.

Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes

Microbial hitchhikers on intercontinental dust: catching a lift in Chad

Microbial hitchhikers on intercontinental dust: high-throughput sequencing to catalogue microbes in small sand samples

NIBLSE: A Network for Integrating Bioinformatics into Life Sciences Education

Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil

Nitrogen fixation in wheat provided by Klebsiella pneumoniae 342.

Non-lethal growth inhibition by arresting the starch utilization system of clinically relevant human isolates of Bacteroides dorei

On the role of gut bacteria and infant diet in the development of autoimmunity for type 1 diabetes. Reply to Hänninen ALM and Toivonen RK [letter].

PANGEA: pipeline for analysis of next generation amplicons

Plants as a habitat for beneficial and/or human pathogenic bacteria

Post-hypoxia Invasion of the fetal brain by multidrug resistant Staphylococcus

Proof of principle: Physiological transfer of small numbers of bacteria from mother to fetus in late-gestation pregnant sheep

Proposal to rename Carnobacterium inhibens as Carnobacterium inhibens subsp. inhibens subsp. nov. and description of Carnobacterium inhibens subsp. gilichinskyi subsp. nov., a psychrotolerant bacterium isolated from Siberian permafrost

Pyrosequencing enumerates and contrasts soil microbial diversity