Lista de obras -

Aligning dynamic networks with DynaWAVE

artículo científico publicado en 2018

An integrative approach to modeling biological networks

artículo científico publicado en 2010

Analysis of computational codon usage models and their association with translationally slow codons

artículo científico publicado en 2020

Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison

artículo científico publicado en 2020

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy

artículo científico publicado en 2010

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

artículo científico publicado en 2008

ClueNet: Clustering a temporal network based on topological similarity rather than denseness.

artículo científico publicado en 2018

Complementarity of network and sequence information in homologous proteins

artículo científico publicado en 2010

Data-driven network alignment

artículo científico publicado en 2020

Dominating biological networks

artículo científico publicado en 2011

Dynamic networks reveal key players in aging

artículo científico

Fair evaluation of global network aligners

artículo científico publicado en 2015

From homogeneous to heterogeneous network alignment via colored graphlets

artículo científico publicado en 2018

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

artículo científico publicado en 2017

Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation

scientific article published on 18 August 2016

Global Network Alignment in the Context of Aging

artículo científico publicado en 2015

GraphCrunch: a tool for large network analyses

artículo científico publicado en 2008

Improving identification of key players in aging via network de-noising and core inference

artículo científico publicado en 2015

Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation

artículo científico publicado en 2020

L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks

scientific article published on 03 March 2020

Local versus global biological network alignment

artículo científico publicado en 2016

MAGNA: Maximizing Accuracy in Global Network Alignment

artículo científico publicado en 2014

Multiple network alignment via multiMAGNA+.

artículo científico publicado en 2017

Network analysis of synonymous codon usage

artículo científico publicado en 2020

Network analysis of the NetHealth data: exploring co-evolution of individuals’ social network positions and physical activities

article

Network-based protein structural classification

artículo científico publicado en 2020

Networks' Characteristics Matter for Systems Biology

artículo científico publicado en 2014

Optimal network alignment with graphlet degree vectors

artículo científico publicado en 2010

Optimized null model for protein structure networks.

artículo científico publicado en 2009

Proper evaluation of alignment-free network comparison methods

artículo científico publicado en 2015

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets

artículo científico publicado en 2010

Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods.

artículo científico publicado en 2017

Revealing missing parts of the interactome via link prediction

artículo científico publicado en 2014

SCOUT: simultaneous time segmentation and community detection in dynamic networks

artículo científico publicado en 2016

Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin

artículo científico publicado en 2017

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

artículo científico publicado en 2010

Temporal network alignment via GoT-WAVE

artículo científico publicado en 2019

The post-genomic era of biological network alignment

artículo científico publicado en 2015

The power of dynamic social networks to predict individuals' mental health

artículo científico publicado en 2020

Topological Characteristics of Molecular Networks

Topological network alignment uncovers biological function and phylogeny

artículo científico publicado en 2010

Uncovering biological network function via graphlet degree signatures.

artículo científico publicado en 2008

Lista de obras de

Aligning dynamic networks with DynaWAVE

An integrative approach to modeling biological networks

Analysis of computational codon usage models and their association with translationally slow codons

Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

ClueNet: Clustering a temporal network based on topological similarity rather than denseness.

Complementarity of network and sequence information in homologous proteins

Data-driven network alignment

Dominating biological networks

Dynamic networks reveal key players in aging

Fair evaluation of global network aligners

From homogeneous to heterogeneous network alignment via colored graphlets

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison.

Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation

Global Network Alignment in the Context of Aging

GraphCrunch: a tool for large network analyses

Improving identification of key players in aging via network de-noising and core inference

Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation

L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks

Local versus global biological network alignment

MAGNA: Maximizing Accuracy in Global Network Alignment

Multiple network alignment via multiMAGNA+.

Network analysis of synonymous codon usage

Network analysis of the NetHealth data: exploring co-evolution of individuals’ social network positions and physical activities

Network-based protein structural classification

Networks' Characteristics Matter for Systems Biology

Optimal network alignment with graphlet degree vectors

Optimized null model for protein structure networks.

Proper evaluation of alignment-free network comparison methods

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets

Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods.

Revealing missing parts of the interactome via link prediction

SCOUT: simultaneous time segmentation and community detection in dynamic networks

Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

Temporal network alignment via GoT-WAVE

The post-genomic era of biological network alignment

The power of dynamic social networks to predict individuals' mental health

Topological Characteristics of Molecular Networks

Topological network alignment uncovers biological function and phylogeny

Uncovering biological network function via graphlet degree signatures.