Lista de obras -

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

artículo científico publicado en 2020

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.

artículo científico publicado en 2016

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

scientific article published on 17 January 2019

A space and time-efficient index for the compacted colored de Bruijn graph.

artículo científico publicado en 2018

AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite

artículo científico publicado en 2022

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

artículo científico publicado en 2019

Alignment and mapping methodology influence transcript abundance estimation

artículo científico publicado en 2020

An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search

scientific article published on 16 March 2020

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

artículo científico

Data-dependent bucketing improves reference-free compression of sequencing reads

artículo científico publicado en 2015

Global network alignment using multiscale spectral signatures ⬇️

artículo científico publicado el 9 de octubre de 2012

Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis

artículo científico publicado en 2018

Identification of alternative topological domains in chromatin

artículo científico publicado en 2014

Improved data-driven likelihood factorizations for transcript abundance estimation

artículo científico publicado en 2017

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

artículo científico publicado en 2018

Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level

scientific article published on 01 July 2019

Nonparametric expression analysis using inferential replicate counts

artículo científico publicado en 2019

Parsimonious reconstruction of network evolution ⬇️

artículo científico publicado el 19 de septiembre de 2012

Predicting protein interactions via parsimonious network history inference ⬇️

artículo científico publicado el 1 de julio de 2013

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

artículo científico publicado en 2021

Quark enables semi-reference-based compression of RNA-seq data

artículo científico publicado en 2017

RNA sequencing data: hitchhiker's guide to expression analysis

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes

artículo científico publicado en 2016

Reference-based compression of short-read sequences using path encoding

artículo científico publicado en 2015

Resolving spatial inconsistencies in chromosome conformation measurements ⬇️

artículo científico publicado el 9 de marzo de 2013

Rich Chromatin Structure Prediction from Hi-C Data

scientific article published on 28 June 2018

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

artículo científico publicado en 2014

Salmon provides fast and bias-aware quantification of transcript expression

artículo científico publicado en 2017

Squeakr: an exact and approximate k-mer counting system

artículo científico publicado en 2018

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

article by Michael I Love et al published 1 October 2018 in F1000Research

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

article by Michael I Love et al published 27 June 2018 in F1000Research

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

artículo científico publicado en 2020

TransRate: reference free quality assessment of de-novo transcriptome assemblies

TransRate: reference-free quality assessment of de novo transcriptome assemblies

artículo científico publicado en 2016

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

scientific article published on 25 February 2020

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph

artículo científico publicado en 2017

Lista de obras de

A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs

A space and time-efficient index for the compacted colored de Bruijn graph.

AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

Alignment and mapping methodology influence transcript abundance estimation

An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

Data-dependent bucketing improves reference-free compression of sequencing reads

Global network alignment using multiscale spectral signatures ⬇️

Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis

Identification of alternative topological domains in chromatin

Improved data-driven likelihood factorizations for transcript abundance estimation

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level

Nonparametric expression analysis using inferential replicate counts

Parsimonious reconstruction of network evolution ⬇️

Predicting protein interactions via parsimonious network history inference ⬇️

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

Quark enables semi-reference-based compression of RNA-seq data

RNA sequencing data: hitchhiker's guide to expression analysis

RNA sequencing data: hitchhiker's guide to expression analysis

RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes

Reference-based compression of short-read sequences using path encoding

Resolving spatial inconsistencies in chromosome conformation measurements ⬇️

Rich Chromatin Structure Prediction from Hi-C Data

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Salmon provides fast and bias-aware quantification of transcript expression

Squeakr: an exact and approximate k-mer counting system

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

TransRate: reference free quality assessment of de-novo transcriptome assemblies

TransRate: reference-free quality assessment of de novo transcriptome assemblies

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

deBGR: an efficient and near-exact representation of the weighted de Bruijn graph