Lista de obras -

A mouse mammary gland involution mRNA signature identifies biological pathways potentially associated with breast cancer metastasis

scientific article published on 30 April 2009

A robust method to derive functional neural crest cells from human pluripotent stem cells ⬇️

artículo científico publicado el 30 de junio de 2013

AKAP13 Rho-GEF and PKD-Binding Domain Deficient Mice Develop Normally but Have an Abnormal Response to β-Adrenergic-Induced Cardiac Hypertrophy ⬇️

artículo científico publicado el 26 de abril de 2013

ANOSVA: a statistical method for detecting splice variation from expression data

artículo científico publicado en 2005

Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia

scientific article published on 13 May 2019

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

artículo científico publicado en 2010

Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors

artículo científico publicado en 2009

Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells

artículo científico publicado en 2014

Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation

artículo científico publicado en 2010

An Introduction to Pathway Analysis with GenMAPP

Analyzing alternative splicing data of splice junction arrays from Parkinson patients' leukocytes before and after deep brain stimulation as compared with control donors

artículo científico publicado en 2015

Asymmetrically Segregated Mitochondria Provide Cellular Memory of Hematopoietic Stem Cell Replicative History and Drive HSC Attrition

artículo científico publicado en 2020

Author Correction: Single-cell analysis of mixed-lineage states leading to a binary cell fate choice

scientific article published on 01 May 2019

Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor

artículo científico publicado en 2020

Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf

artículo científico publicado en 2017

Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice

artículo científico publicado en 2019

DNMT3A Haploinsufficiency Transforms FLT3ITD Myeloproliferative Disease into a Rapid, Spontaneous, and Fully Penetrant Acute Myeloid Leukemia

artículo científico publicado en 2016

DR-06REACTIVE OXYGEN SPECIES MEDIATE THERAPEUTIC RESPONSE AND RESISTANCE IN GLIOBLASTOMA

artículo científico publicado en 2014

DeepImmuno: Deep learning-empowered prediction and generation of immunogenic peptides for T cell immunity

artículo científico publicado en 2020

Defective transcription elongation in a subset of cancers confers immunotherapy resistance

artículo científico publicado en 2018

Deficiency of the lipid synthesis enzyme, DGAT1, extends longevity in mice ⬇️

artículo científico publicado el 1 de enero de 2012

Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis

artículo científico publicado en 2018

Differential transcriptome response to proton versus X-ray radiation reveals novel candidate targets for combinatorial PT therapy in lymphoma

artículo científico publicado en 2020

DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets

scholarly article published 8 July 2018

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data

scientific article published on 01 November 2019

FOXO activity adaptation safeguards the hematopoietic stem cell compartment in hyperglycemia

artículo científico publicado en 2020

G(i)-coupled GPCR signaling controls the formation and organization of human pluripotent colonies

artículo científico publicado en 2009

GO-Elite: a flexible solution for pathway and ontology over-representation

artículo científico publicado en 2012

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies

artículo científico publicado en 2021

GenMAPP 2: new features and resources for pathway analysis

artículo científico publicado en 2007

Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A.

artículo científico publicado en 2005

Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes.

artículo científico publicado en 2017

IL-1 signaling mediates intrauterine inflammation and chorio-decidua neutrophil recruitment and activation.

artículo científico publicado en 2018

Identification of Spt5 target genes in zebrafish development reveals its dual activity in vivo

artículo científico publicado en 2008

Identifying genetic networks underlying myometrial transition to labor

artículo científico publicado en 2005

In situ mapping identifies distinct vascular niches for myelopoiesis

artículo científico publicado en 2021

Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium

artículo científico publicado en 2016

Integrative Analysis of Proteomics Data to Obtain Clinically Relevant Markers

artículo científico publicado en 2017

Intragraft Antiviral-Specific Gene Expression as a Distinctive Transcriptional Signature for Studies in Polyomavirus-Associated Nephropathy.

artículo científico publicado en 2016

Intrinsic Age-Dependent Changes and Cell-Cell Contacts Regulate Nephron Progenitor Lifespan

artículo científico publicado en 2015

Investigating Cell Fate Decisions with ICGS Analysis of Single Cells

scientific article published on 01 January 2019

KIF3A genetic variation is associated with pediatric asthma in the presence of eczema independent of allergic rhinitis

artículo científico publicado en 2017

Lentiviral vectors and protocols for creation of stable hESC lines for fluorescent tracking and drug resistance selection of cardiomyocytes

artículo científico publicado en 2009

Loaded, locked, drawn: kSORT validated for patient samples

artículo científico publicado en 2016

Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing

artículo científico publicado en 2014

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data

artículo científico publicado en 2014

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

artículo científico publicado en 2003

MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia

artículo científico publicado en 2020

Mammary gland involution as a multi-step process

artículo científico publicado en 2007

Maturation of heart valve cell populations during postnatal remodeling

scientific article published on 12 March 2019

Molecular Characterization of Pediatric Restrictive Cardiomyopathy from Integrative Genomics

artículo científico publicado en 2017

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives

artículo científico publicado en 2017

Monocyte and bone marrow macrophage transcriptional phenotypes in systemic juvenile idiopathic arthritis reveal TRIM8 as a mediator of IFN-γ hyper-responsiveness and risk for macrophage activation syndrome

artículo científico publicado en 2020

Mosaic: making biological sense of complex networks

artículo científico publicado en 2012

Mouse models of neutropenia reveal progenitor-stage-specific defects

artículo científico publicado en 2020

Obesity alters the long-term fitness of the hematopoietic stem cell compartment through modulation of Gfi1 expression.

artículo científico publicado en 2017

PHIP as a therapeutic target for driver-negative subtypes of melanoma, breast, and lung cancer

artículo científico publicado en 2018

PHIP drives glioblastoma motility and invasion by regulating the focal adhesion complex

scientific article published on 09 April 2020

Pathobiological Pseudohypoxia as a Putative Mechanism Underlying Myelodysplastic Syndromes

artículo científico publicado en 2018

Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation

artículo científico publicado en 2020

Protocol for Identification and Removal of Doublets with DoubletDecon

scientific article published on 11 August 2020

Publisher Correction: MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia

artículo científico publicado en 2020

Rational targeting Cdc42 restrains Th2 cell differentiation and prevents allergic airway inflammation

artículo científico publicado en 2018

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF

artículo científico publicado en 2020

SKI controls MDS-associated chronic TGF-β signaling, aberrant splicing, and stem cell fitness

artículo científico publicado en 2018

Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.

scientific article published on 31 August 2016

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

artículo científico publicado en 2020

Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes ⬇️

artículo científico publicado el 13 de mayo de 2013

Stem cell pluripotency: Alternative modes of transcription regulation ⬇️

artículo científico publicado el 2 de agosto de 2010

Synthetic Gene Network with Positive Feedback Loop Amplifies Cellulase Gene Expression in Neurospora crassa

artículo científico publicado en 2018

Systems biology evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity

artículo científico publicado en 2015

Systems-level perspective of sudden infant death syndrome

artículo científico publicado en 2014

TRAF6 Mediates Basal Activation of NF-κB Necessary for Hematopoietic Stem Cell Homeostasis

artículo científico publicado en 2018

The Human Cell Atlas bone marrow single-cell interactive web portal

artículo científico publicado en 2018

The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification

artículo científico publicado en 2018

The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification

artículo científico publicado en 2018

The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution

scientific article published on 28 March 2019

The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics

artículo científico publicado en 2013

The kSORT assay to detect renal transplant patients at high risk for acute rejection: results of the multicenter AART study

artículo científico publicado en 2014

Time- and exercise-dependent gene regulation in human skeletal muscle ⬇️

artículo científico publicado el 25 de septiembre de 2003

Tissues Harvested Using an Automated Surgical Approach Confirm Molecular Heterogeneity of Glioblastoma and Enhance Specimen's Translational Research Value

artículo científico publicado en 2019

Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity

artículo científico publicado en 2018

Transcriptional Perturbations in Graft Rejection

artículo científico publicado en 2015

Transcriptomic and epigenomic differences in human induced pluripotent stem cells generated from six reprogramming methods

scientific article published on 03 October 2017

U2AF1 mutations induce oncogenic IRAK4 isoforms and activate innate immune pathways in myeloid malignancies

scientific article published on 22 April 2019

Ubiquitination of hnRNPA1 by TRAF6 links chronic innate immune signaling with myelodysplasia.

artículo científico publicado en 2016

Unraveling bone marrow architecture

artículo científico publicado en 2020

Whole transcriptome RNA sequencing data from blood leukocytes derived from Parkinson's disease patients prior to and following deep brain stimulation treatment

artículo científico publicado en 2014

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data ⬇️

artículo científico publicado el 4 de junio de 2013

cellHarmony: Cell-level matching and comparison of single-cell transcriptomes

cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes

scientific article published on 01 December 2019

miR-196b target screen reveals mechanisms maintaining leukemia stemness with therapeutic potential

scientific article published on 11 July 2018

Lista de obras de

A mouse mammary gland involution mRNA signature identifies biological pathways potentially associated with breast cancer metastasis

A robust method to derive functional neural crest cells from human pluripotent stem cells ⬇️

AKAP13 Rho-GEF and PKD-Binding Domain Deficient Mice Develop Normally but Have an Abnormal Response to β-Adrenergic-Induced Cardiac Hypertrophy ⬇️

ANOSVA: a statistical method for detecting splice variation from expression data

Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors

Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells

Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation

An Introduction to Pathway Analysis with GenMAPP

Analyzing alternative splicing data of splice junction arrays from Parkinson patients' leukocytes before and after deep brain stimulation as compared with control donors

Asymmetrically Segregated Mitochondria Provide Cellular Memory of Hematopoietic Stem Cell Replicative History and Drive HSC Attrition

Author Correction: Single-cell analysis of mixed-lineage states leading to a binary cell fate choice

Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor

Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf

Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice

DNMT3A Haploinsufficiency Transforms FLT3ITD Myeloproliferative Disease into a Rapid, Spontaneous, and Fully Penetrant Acute Myeloid Leukemia

DR-06REACTIVE OXYGEN SPECIES MEDIATE THERAPEUTIC RESPONSE AND RESISTANCE IN GLIOBLASTOMA

DeepImmuno: Deep learning-empowered prediction and generation of immunogenic peptides for T cell immunity

Defective transcription elongation in a subset of cancers confers immunotherapy resistance

Deficiency of the lipid synthesis enzyme, DGAT1, extends longevity in mice ⬇️

Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis

Differential transcriptome response to proton versus X-ray radiation reveals novel candidate targets for combinatorial PT therapy in lymphoma

DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data

FOXO activity adaptation safeguards the hematopoietic stem cell compartment in hyperglycemia

G(i)-coupled GPCR signaling controls the formation and organization of human pluripotent colonies

GO-Elite: a flexible solution for pathway and ontology over-representation

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies

GenMAPP 2: new features and resources for pathway analysis

Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A.

Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes.

IL-1 signaling mediates intrauterine inflammation and chorio-decidua neutrophil recruitment and activation.

Identification of Spt5 target genes in zebrafish development reveals its dual activity in vivo

Identifying genetic networks underlying myometrial transition to labor

In situ mapping identifies distinct vascular niches for myelopoiesis

Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium

Integrative Analysis of Proteomics Data to Obtain Clinically Relevant Markers

Intragraft Antiviral-Specific Gene Expression as a Distinctive Transcriptional Signature for Studies in Polyomavirus-Associated Nephropathy.

Intrinsic Age-Dependent Changes and Cell-Cell Contacts Regulate Nephron Progenitor Lifespan

Investigating Cell Fate Decisions with ICGS Analysis of Single Cells

KIF3A genetic variation is associated with pediatric asthma in the presence of eczema independent of allergic rhinitis

Lentiviral vectors and protocols for creation of stable hESC lines for fluorescent tracking and drug resistance selection of cardiomyocytes

Loaded, locked, drawn: kSORT validated for patient samples

Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia

Mammary gland involution as a multi-step process

Maturation of heart valve cell populations during postnatal remodeling

Molecular Characterization of Pediatric Restrictive Cardiomyopathy from Integrative Genomics

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives

Monocyte and bone marrow macrophage transcriptional phenotypes in systemic juvenile idiopathic arthritis reveal TRIM8 as a mediator of IFN-γ hyper-responsiveness and risk for macrophage activation syndrome

Mosaic: making biological sense of complex networks

Mouse models of neutropenia reveal progenitor-stage-specific defects

Obesity alters the long-term fitness of the hematopoietic stem cell compartment through modulation of Gfi1 expression.

PHIP as a therapeutic target for driver-negative subtypes of melanoma, breast, and lung cancer

PHIP drives glioblastoma motility and invasion by regulating the focal adhesion complex

Pathobiological Pseudohypoxia as a Putative Mechanism Underlying Myelodysplastic Syndromes

Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation

Protocol for Identification and Removal of Doublets with DoubletDecon

Publisher Correction: MBNL1 regulates essential alternative RNA splicing patterns in MLL-rearranged leukemia

Rational targeting Cdc42 restrains Th2 cell differentiation and prevents allergic airway inflammation

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF

SKI controls MDS-associated chronic TGF-β signaling, aberrant splicing, and stem cell fitness

Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.

Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers

Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes ⬇️

Stem cell pluripotency: Alternative modes of transcription regulation ⬇️

Synthetic Gene Network with Positive Feedback Loop Amplifies Cellulase Gene Expression in Neurospora crassa

Systems biology evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity

Systems-level perspective of sudden infant death syndrome

TRAF6 Mediates Basal Activation of NF-κB Necessary for Hematopoietic Stem Cell Homeostasis

The Human Cell Atlas bone marrow single-cell interactive web portal

The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification

The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification

The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution

The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics

The kSORT assay to detect renal transplant patients at high risk for acute rejection: results of the multicenter AART study