Lista de obras - Johannes Köster - Dominio Público Uruguay

A Bayesian model for single cell transcript expression analysis on MERFISH data

artículo científico publicado en 2019

A Bayesian model for single cell transcript expression analysis on MERFISH data

scientific article published on 01 March 2019

Accurate and scalable variant calling from single cell DNA sequencing data with ProSolo

artículo científico publicado en 2021

Bioconda

artículo científico publicado en 2017

Bioconda: sustainable and comprehensive software distribution for the life sciences

artículo científico publicado en 2018

CRISPR-DO for genome-wide CRISPR design and optimization

artículo científico publicado en 2016

Cancer evolution, mutations, and clonal selection in relapse neuroblastoma.

artículo científico publicado en 2018

Differential turnover of isoflavone 7-O-glucoside-6″-O-malonates in Cicer arietinum roots

artículo científico publicado en 2002

Efficiently mining protein interaction dependencies from large text corpora

artículo científico publicado en 2012

Eleven grand challenges in single-cell data science

artículo científico publicado en 2020

Full-length de novo viral quasispecies assembly through variation graph construction

artículo científico publicado en 2019

Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data

artículo científico publicado en 2021

Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data

artículo científico publicado en 2012

Life threatening neuroleptic malignant syndrome due to olanzapine

artículo científico publicado en 2003

Machine learning reveals a PD-L1-independent prediction of response to immunotherapy of non-small cell lung cancer by gene expression context

scientific article published on 12 October 2020

Massively parallel read mapping on GPUs with the q-group index and PEANUT.

artículo científico publicado en 2014

MiR-137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A.

artículo científico publicado en 2013

Modeling and simulating networks of interdependent protein interactions.

artículo científico publicado en 2018

Mutational dynamics between primary and relapse neuroblastomas.

artículo científico publicado en 2015

New Flavone Glucoside Malonylesters from Bryum capillare

scientific article published in 2018

Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma

artículo científico publicado en 2012

Practical Computational Reproducibility in the Life Sciences

artículo científico publicado en 2018

Practical computational reproducibility in the life sciences

artículo científico publicado en 2017

Protein complex similarity based on Weisfeiler-Lehman labeling

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.

artículo científico publicado en 2015

Rust-Bio: a fast and safe bioinformatics library. ⬇️

artículo científico publicado en 2015

Sensitivity to cdk1-inhibition is modulated by p53 status in preclinical models of embryonal tumors

artículo científico publicado en 2015

SimLoRD: Simulation of Long Read Data

artículo científico publicado en 2016

Snakemake--a scalable bioinformatics workflow engine

artículo científico publicado en 2012

Snakemake-a scalable bioinformatics workflow engine

artículo científico publicado en 2018

Sustainable data analysis with Snakemake

artículo científico publicado en 2021

Targeting the innate immunoreceptor RIG-I overcomes melanoma-intrinsic resistance to T cell immunotherapy

scientific article published on 19 May 2020

The Public Repository of Xenografts Enables Discovery and Randomized Phase II-like Trials in Mice

artículo científico publicado en 2016

The Public Repository of Xenografts Enables Discovery and Randomized Phase II-like Trials in Mice

artículo científico publicado en 2016

The first identification of isoflavones from a bryophyte

artículo científico publicado en 2002

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.

artículo científico publicado en 2018

Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery

artículo científico publicado en 2020

Lista de obras de Johannes Köster

A Bayesian model for single cell transcript expression analysis on MERFISH data

A Bayesian model for single cell transcript expression analysis on MERFISH data

Accurate and scalable variant calling from single cell DNA sequencing data with ProSolo

Bioconda

Bioconda: sustainable and comprehensive software distribution for the life sciences

CRISPR-DO for genome-wide CRISPR design and optimization

Cancer evolution, mutations, and clonal selection in relapse neuroblastoma.

Differential turnover of isoflavone 7-O-glucoside-6″-O-malonates in Cicer arietinum roots

Efficiently mining protein interaction dependencies from large text corpora

Eleven grand challenges in single-cell data science

Full-length de novo viral quasispecies assembly through variation graph construction

Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data

Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data

Life threatening neuroleptic malignant syndrome due to olanzapine

Machine learning reveals a PD-L1-independent prediction of response to immunotherapy of non-small cell lung cancer by gene expression context

Massively parallel read mapping on GPUs with the q-group index and PEANUT.

MiR-137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A.

Modeling and simulating networks of interdependent protein interactions.

Mutational dynamics between primary and relapse neuroblastomas.

New Flavone Glucoside Malonylesters from Bryum capillare

Next-generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN-amplified neuroblastoma

Practical Computational Reproducibility in the Life Sciences

Practical computational reproducibility in the life sciences

Protein complex similarity based on Weisfeiler-Lehman labeling

Protein complex similarity based on Weisfeiler-Lehman labeling

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.

Rust-Bio: a fast and safe bioinformatics library. ⬇️

Sensitivity to cdk1-inhibition is modulated by p53 status in preclinical models of embryonal tumors

SimLoRD: Simulation of Long Read Data

Snakemake--a scalable bioinformatics workflow engine

Snakemake-a scalable bioinformatics workflow engine

Sustainable data analysis with Snakemake

Targeting the innate immunoreceptor RIG-I overcomes melanoma-intrinsic resistance to T cell immunotherapy

The Public Repository of Xenografts Enables Discovery and Randomized Phase II-like Trials in Mice

The Public Repository of Xenografts Enables Discovery and Randomized Phase II-like Trials in Mice

The first identification of isoflavones from a bryophyte

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.

Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery