Lista de obras -

A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development

artículo científico publicado en 2016

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

scientific article published on 16 September 2020

A computational analysis of the dynamic roles of talin, Dok1, and PIPKI for integrin activation

artículo científico publicado en 2011

A computational analysis of the impact of the transient genetic imbalance on compartmentalized gene expression during sporulation in Bacillus subtilis

artículo científico publicado en 2006

A mathematical model for germinal centre kinetics and affinity maturation

artículo científico publicado en 2002

A quantitative analysis of growth control in the Drosophila eye disc

artículo científico publicado en 2016

A quantitative study of the benefits of co-regulation using the spoIIA operon as an example

artículo científico publicado en 2006

An Unbiased Analysis of Candidate Mechanisms for the Regulation of Drosophila Wing Disc Growth

artículo científico publicado en 2016

An analysis of B cell selection mechanisms in germinal centers

artículo científico publicado en 2006

An interplay of geometry and signaling enables robust lung branching morphogenesis.

artículo científico publicado en 2014

Analyzing and constraining signaling networks: parameter estimation for the user

artículo científico publicado en 2012

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs

artículo científico publicado en 2014

Axis Patterning by BMPs: Cnidarian Network Reveals Evolutionary Constraints.

artículo científico publicado en 2015

Branch mode selection during early lung development

artículo científico publicado en 2012

Cell-based simulations of biased epithelial lung growth

scientific article published on 13 December 2019

Computational modelling of bovine ovarian follicle development

artículo científico publicado en 2013

Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.

artículo científico publicado en 2017

Digit patterning during limb development as a result of the BMP-receptor interaction ⬇️

artículo científico publicado en 2012

Dynamic scaling of morphogen gradients on growing domains

artículo científico publicado en 2014

ECCB 2012: The 11th European Conference on Computational Biology.

artículo científico publicado en 2012

Enhanced cellular sensitivity from partitioning the integrin receptors into multiple clusters

artículo científico publicado en 2013

Feedback, receptor clustering, and receptor restriction to single cells yield large Turing spaces for ligand-receptor-based Turing models ⬇️

artículo científico publicado en 2014

From single cells to multicellular organisms - a quantitative analysis ⬇️

doctoral thesis by Dagmar Iber

Generation of 3D Soluble Signal Gradients in Cell-Laden Hydrogels Using Passive Diffusion

artículo científico publicado en 2018

Global optimization using Gaussian processes to estimate biological parameters from image data

artículo científico publicado en 2018

Growth and size control during development.

artículo científico publicado en 2017

Growth control in the Drosophila eye disc by the cytokine Unpaired.

artículo científico publicado en 2017

How do digits emerge? - mathematical models of limb development

artículo científico

Id4 Downstream of Notch2 Maintains Neural Stem Cell Quiescence in the Adult Hippocampus

scientific article published on 01 August 2019

Image-based modeling of kidney branching morphogenesis reveals GDNF-RET based Turing-type mechanism and pattern-modulating WNT11 feedback

artículo científico publicado en 2019

Image-based modelling of organogenesis

artículo científico publicado en 2015

Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation inBacillus subtilisas a Test Case ⬇️

artículo científico publicado el 1 de enero de 2011

Integrin activation--the importance of a positive feedback

artículo científico publicado en 2006

Inter-dependent tissue growth and Turing patterning in a model for long bone development

artículo científico publicado en 2013

Kidney branching morphogenesis under the control of a ligand-receptor-based Turing mechanism

artículo científico publicado en 2013

LBIBCell: a cell-based simulation environment for morphogenetic problems ⬇️

artículo científico publicado en 2015

MOCCASIN: converting MATLAB ODE models to SBML.

artículo científico publicado en 2016

Making sense—data-based simulations of vertebrate limb development ⬇️

artículo científico publicado el 19 de diciembre de 2012

Morphological study of embryonic Chd8+/− mouse brains using light-sheet microscopy

artículo científico publicado en 2021

Plasticity of TGF-β signaling

artículo científico publicado en 2011

Prediction stability in a data-based, mechanistic model of σF regulation during sporulation in Bacillus subtilis

artículo científico publicado en 2013

Predictive models for cellular signaling networks

artículo científico

Publisher Correction: Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis

scientific article published on 01 September 2019

Read-Out of Dynamic Morphogen Gradients on Growing Domains

artículo científico publicado en 2015

SHH propagates distal limb bud development by enhancing CYP26B1-mediated retinoic acid clearance via AER-FGF signalling

artículo científico publicado en 2011

Simulating tissue morphogenesis and signaling

artículo científico publicado en 2015

Simulation of Morphogen and Tissue Dynamics

article

Simulations demonstrate a simple network to be sufficient to control branch point selection, smooth muscle and vasculature formation during lung branching morphogenesis

artículo científico publicado en 2012

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes

artículo científico publicado en 2014

Studies of morphogens: keep calm and carry on.

artículo científico publicado en 2013

Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis

artículo científico publicado en 2019

Tead transcription factors differentially regulate cortical development

artículo científico publicado en 2020

The control of branching morphogenesis

artículo científico publicado en 2013

The mechanism of cell differentiation in Bacillus subtilis

artículo científico publicado en 2006

The mechanism of sudden stripe formation during dorso-ventral patterning in Drosophila

artículo científico publicado en 2006

Time-lapse and cleared imaging of mouse embryonic lung explants to study three-dimensional cell morphology and topology dynamics

scientific article published in 2023

Travelling waves in somitogenesis: Collective cellular properties emerge from time-delayed juxtacrine oscillation coupling

artículo científico publicado en 2018

Lista de obras de

A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

A computational analysis of the dynamic roles of talin, Dok1, and PIPKI for integrin activation

A computational analysis of the impact of the transient genetic imbalance on compartmentalized gene expression during sporulation in Bacillus subtilis

A mathematical model for germinal centre kinetics and affinity maturation

A quantitative analysis of growth control in the Drosophila eye disc

A quantitative study of the benefits of co-regulation using the spoIIA operon as an example

An Unbiased Analysis of Candidate Mechanisms for the Regulation of Drosophila Wing Disc Growth

An analysis of B cell selection mechanisms in germinal centers

An interplay of geometry and signaling enables robust lung branching morphogenesis.

Analyzing and constraining signaling networks: parameter estimation for the user

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs

Axis Patterning by BMPs: Cnidarian Network Reveals Evolutionary Constraints.

Branch mode selection during early lung development

Cell-based simulations of biased epithelial lung growth

Computational modelling of bovine ovarian follicle development

Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.

Digit patterning during limb development as a result of the BMP-receptor interaction ⬇️

Dynamic scaling of morphogen gradients on growing domains

ECCB 2012: The 11th European Conference on Computational Biology.

Enhanced cellular sensitivity from partitioning the integrin receptors into multiple clusters

Feedback, receptor clustering, and receptor restriction to single cells yield large Turing spaces for ligand-receptor-based Turing models ⬇️

From single cells to multicellular organisms - a quantitative analysis ⬇️

Generation of 3D Soluble Signal Gradients in Cell-Laden Hydrogels Using Passive Diffusion

Global optimization using Gaussian processes to estimate biological parameters from image data

Growth and size control during development.

Growth control in the Drosophila eye disc by the cytokine Unpaired.

How do digits emerge? - mathematical models of limb development

Id4 Downstream of Notch2 Maintains Neural Stem Cell Quiescence in the Adult Hippocampus

Image-based modeling of kidney branching morphogenesis reveals GDNF-RET based Turing-type mechanism and pattern-modulating WNT11 feedback

Image-based modelling of organogenesis

Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation inBacillus subtilisas a Test Case ⬇️

Integrin activation--the importance of a positive feedback

Inter-dependent tissue growth and Turing patterning in a model for long bone development

Kidney branching morphogenesis under the control of a ligand-receptor-based Turing mechanism

LBIBCell: a cell-based simulation environment for morphogenetic problems ⬇️

MOCCASIN: converting MATLAB ODE models to SBML.

Making sense—data-based simulations of vertebrate limb development ⬇️

Morphological study of embryonic Chd8+/− mouse brains using light-sheet microscopy

Plasticity of TGF-β signaling

Prediction stability in a data-based, mechanistic model of σF regulation during sporulation in Bacillus subtilis

Predictive models for cellular signaling networks

Publisher Correction: Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis

Read-Out of Dynamic Morphogen Gradients on Growing Domains

SHH propagates distal limb bud development by enhancing CYP26B1-mediated retinoic acid clearance via AER-FGF signalling

Simulating tissue morphogenesis and signaling

Simulation of Morphogen and Tissue Dynamics

Simulations demonstrate a simple network to be sufficient to control branch point selection, smooth muscle and vasculature formation during lung branching morphogenesis

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes

Studies of morphogens: keep calm and carry on.

Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis

Tead transcription factors differentially regulate cortical development

The control of branching morphogenesis

The mechanism of cell differentiation in Bacillus subtilis

The mechanism of sudden stripe formation during dorso-ventral patterning in Drosophila

Time-lapse and cleared imaging of mouse embryonic lung explants to study three-dimensional cell morphology and topology dynamics

Travelling waves in somitogenesis: Collective cellular properties emerge from time-delayed juxtacrine oscillation coupling