Lista de obras -

A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses

artículo científico publicado en 2016

A draft genome sequence for the Ixodes scapularis cell line, ISE6.

artículo científico publicado en 2018

A host subtraction database for virus discovery in human cell line sequencing data

ANDES: Statistical tools for the ANalyses of DEep Sequencing

artículo científico publicado en 2010

Analysis of recombinant H7N9 wild-type and mutant viruses in pigs shows that the Q226L mutation in HA is important for transmission

artículo científico publicado en 2014

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

artículo científico publicado en 2018

Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

scholarly article published by Susmita Shrivastava in 2018

Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing ⬇️

artículo científico publicado el 6 de noviembre de 2012

Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem

scholarly article by Divya Venkatesh published in August 2018

Characterization of uncultivable bat influenza virus using a replicative synthetic virus

artículo científico publicado en 2014

Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination.

artículo científico publicado en 2017

Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome

artículo científico publicado en 2008

Complete genomic sequence for an avian group G rotavirus from South Africa

artículo científico publicado en 2015

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

artículo científico publicado en 2016

Deep sequencing identifies noncanonical editing of Ebola and Marburg virus RNAs in infected cells

artículo científico publicado en 2014

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance

artículo científico publicado en 2011

Degenerate primer design for highly variable genomes

artículo científico publicado en 2015

Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential

artículo científico publicado en 2016

Evaluation of next generation sequencing platforms for population targeted sequencing studies

artículo científico publicado en 2009

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

artículo científico publicado en 2017

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.

artículo científico publicado en 2013

Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community

artículo científico publicado en 2011

First Complete Genome Sequences of Two Keystone Viruses from Florida

artículo científico publicado en 2015

Genetic stability of foot-and-mouth disease virus during long-term infections in natural hosts

artículo científico publicado en 2018

Genetic variation in an individual human exome

artículo científico publicado en 2008

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

artículo científico publicado en 2018

Genomic reassortment of influenza A virus in North American swine, 1998-2011.

artículo científico publicado en 2012

Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock

artículo científico

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing

artículo científico publicado en 2010

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data

artículo científico publicado en 2015

Influenza a virus migration and persistence in North American wild birds

artículo científico publicado en 2013

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid

artículo científico publicado en 2017

Isolation and characterization of a novel gammaherpesvirus from a microbat cell line

artículo científico publicado en 2016

Lack of selective resistance of influenza A virus in presence of host-targeted antiviral, UV-4B

artículo científico publicado en 2019

Large scale complete genome sequencing and phylodynamic analysis of eastern equine encephalitis virus reveal source-sink transmission dynamics in the United States

artículo científico publicado en 2018

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

artículo científico publicado en 2015

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

artículo científico publicado en 2011

Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States

artículo científico publicado en 2015

Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia

artículo científico publicado en 2016

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses

artículo científico publicado en 2017

Nanoliter reactors improve multiple displacement amplification of genomes from single cells

artículo científico publicado en 2007

North Atlantic migratory bird flyways provide routes for intercontinental movement of avian influenza viruses

artículo científico publicado en 2014

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

artículo científico publicado en 2008

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

artículo científico publicado en 2015

Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012.

artículo científico publicado en 2015

Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13.

artículo científico publicado en 2018

Quantifying influenza virus diversity and transmission in humans

artículo científico publicado en 2016

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene

artículo científico publicado en 2016

Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus

artículo científico publicado en 2016

SISPA-Seq for rapid whole genome surveys of bacterial isolates

artículo científico publicado en 2015

Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus

artículo científico publicado en 2013

Spread and persistence of influenza A viruses in waterfowl hosts in the North American Mississippi migratory flyway

artículo científico publicado en 2015

Standardized metadata for human pathogen/vector genomic sequences

artículo científico publicado en 2014

Synthetic generation of influenza vaccine viruses for rapid response to pandemics

artículo científico publicado en 2013

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

artículo científico publicado en 2011

The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing

artículo científico publicado en 2017

The HuRef Browser: a web resource for individual human genomics

artículo científico publicado en 2008

The contrasting phylodynamics of human influenza B viruses.

artículo científico publicado en 2015

The diploid genome sequence of an individual human

artículo científico publicado en 2007

The effective rate of influenza reassortment is limited during human infection

artículo científico publicado en 2017

The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua

artículo científico publicado en 2014

The soft palate is an important site of adaptation for transmissible influenza viruses

artículo científico publicado en 2015

Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics

artículo científico publicado en 2014

VariantClassifier: A hierarchical variant classifier for annotated genomes

artículo científico publicado en 2010

Whole genome analyses of G1P[8] rotavirus strains from vaccinated and non-vaccinated South African children presenting with diarrhea.

artículo científico publicado en 2014

Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa

artículo científico publicado en 2015

Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa

artículo científico publicado en 2014

Lista de obras de

A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses

A draft genome sequence for the Ixodes scapularis cell line, ISE6.

A host subtraction database for virus discovery in human cell line sequencing data

A host subtraction database for virus discovery in human cell line sequencing data

ANDES: Statistical tools for the ANalyses of DEep Sequencing

Analysis of recombinant H7N9 wild-type and mutant viruses in pigs shows that the Q226L mutation in HA is important for transmission

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing ⬇️

Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem

Characterization of uncultivable bat influenza virus using a replicative synthetic virus

Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination.

Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome

Complete genomic sequence for an avian group G rotavirus from South Africa

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

Deep sequencing identifies noncanonical editing of Ebola and Marburg virus RNAs in infected cells

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance

Degenerate primer design for highly variable genomes

Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential

Evaluation of next generation sequencing platforms for population targeted sequencing studies

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.

Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community

First Complete Genome Sequences of Two Keystone Viruses from Florida

Genetic stability of foot-and-mouth disease virus during long-term infections in natural hosts

Genetic variation in an individual human exome

Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens

Genomic reassortment of influenza A virus in North American swine, 1998-2011.

Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data

Influenza a virus migration and persistence in North American wild birds

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid

Isolation and characterization of a novel gammaherpesvirus from a microbat cell line

Lack of selective resistance of influenza A virus in presence of host-targeted antiviral, UV-4B

Large scale complete genome sequencing and phylodynamic analysis of eastern equine encephalitis virus reveal source-sink transmission dynamics in the United States

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States

Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses

Nanoliter reactors improve multiple displacement amplification of genomes from single cells

North Atlantic migratory bird flyways provide routes for intercontinental movement of avian influenza viruses

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.

Phylogeography of Influenza A(H3N2) Virus in Peru, 2010-2012.

Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13.

Quantifying influenza virus diversity and transmission in humans

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene

Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus

SISPA-Seq for rapid whole genome surveys of bacterial isolates

Sequence analysis of in vivo defective interfering-like RNA of influenza A H1N1 pandemic virus

Spread and persistence of influenza A viruses in waterfowl hosts in the North American Mississippi migratory flyway

Standardized metadata for human pathogen/vector genomic sequences

Synthetic generation of influenza vaccine viruses for rapid response to pandemics

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing

The HuRef Browser: a web resource for individual human genomics

The contrasting phylodynamics of human influenza B viruses.

The diploid genome sequence of an individual human

The effective rate of influenza reassortment is limited during human infection

The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua

The soft palate is an important site of adaptation for transmissible influenza viruses

Universal influenza B virus genomic amplification facilitates sequencing, diagnostics, and reverse genetics

VariantClassifier: A hierarchical variant classifier for annotated genomes

Whole genome analyses of G1P[8] rotavirus strains from vaccinated and non-vaccinated South African children presenting with diarrhea.

Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa

Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa