Lista de obras -

A communal catalogue reveals Earth's multiscale microbial diversity

artículo científico publicado en 2017

Activating and inhibiting connections in biological network dynamics

artículo científico publicado en 2008

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults

artículo científico publicado en 2019

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Are microbiome studies ready for hypothesis-driven research?

scientific article published on 27 July 2018

Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection

artículo científico publicado en 2021

Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

artículo científico publicado en 2020

Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models

artículo científico publicado en 2018

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

artículo científico publicado en 2020

Balance Trees Reveal Microbial Niche Differentiation.

scientific article published on 17 January 2017

Best practices for analysing microbiomes

artículo científico publicado en 2018

Boulder ALignment Editor (ALE): a web-based RNA alignment tool

artículo científico publicado en 2011

Bringing the Dynamic Microbiome to Life with Animations

artículo científico publicado en 2017

Calour: an Interactive, Microbe-Centric Analysis Tool

Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces

scientific article published on 08 April 2019

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

artículo científico publicado en 2020

Collaborative cloud-enabled tools allow rapid, reproducible biological insights ⬇️

artículo científico publicado el 25 de octubre de 2012

Comparison of methods for estimating the nucleotide substitution matrix

artículo científico publicado en 2008

Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings

artículo científico publicado en 2013

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype

artículo científico publicado en 2022

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

artículo científico publicado en 2020

Context and the human microbiome

artículo científico publicado en 2015

Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

scientific article published on 31 August 2020

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

artículo científico publicado en 2019

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

scientific article published on 07 March 2017

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

artículo científico publicado en 2017

Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

artículo científico publicado en 2020

Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects

scientific article published on 26 September 2018

Dynamics of the human gut microbiome in inflammatory bowel disease.

artículo científico publicado en 2017

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

scientific article published on 15 March 2021

Enhancing untargeted metabolomics using metadata-based source annotation

artículo científico publicado en 2022

Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment

article

Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project

artículo científico publicado en 2017

Extreme Dysbiosis of the Microbiome in Critical Illness

artículo científico publicado en 2016

Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake

artículo científico publicado en 2016

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

artículo científico publicado en 2020

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

artículo científico publicado en 2020

Fecal Microbiota Transplant is Highly Effective in Real-World Practice: Initial Results from the FMT National Registry

scientific article published on 30 September 2020

Forensic identification using skin bacterial communities

artículo científico publicado en 2010

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

article

From molecules to dynamic biological communities

artículo científico publicado en 2013

GABA-modulating bacteria of the human gut microbiota

artículo científico publicado en 2018

Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

artículo científico publicado en 2016

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

scientific article published on 01 November 2019

Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension

artículo científico publicado en 2012

Identifying and Predicting Novelty in Microbiome Studies

scientific article published in 2018

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.

artículo científico publicado en 2018

Meeting report: fungal its workshop (october 2012).

artículo científico publicado en 2013

Methods for phylogenetic analysis of microbiome data

scientific article published on 24 May 2018

Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity

artículo científico publicado en 2021

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

artículo científico publicado en 2010

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

artículo científico publicado en 2020

Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians

artículo científico publicado en 2018

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

artículo científico publicado en 2021

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

artículo científico publicado en 2020

Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA.

artículo científico publicado en 2010

Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India

scientific article published on 23 September 2020

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

artículo científico publicado en 2018

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

artículo científico publicado en 2012

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

artículo científico publicado en 2019

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

artículo científico publicado en 2022

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

artículo científico publicado en 2013

PyCogent: a toolkit for making sense from sequence

artículo científico publicado en 2007

QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

artículo científico publicado en 2020

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME allows analysis of high-throughput community sequencing data

artículo científico publicado en 2010

Qiita: rapid, web-enabled microbiome meta-analysis

artículo científico publicado en 2018

RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs

artículo científico publicado en 2012

Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus

artículo científico publicado en 2021

Rapid, large-scale wastewater surveillance and automated reporting system enabled early detection of nearly 85% of COVID-19 cases on a University campus

artículo científico publicado en 2021

Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV

artículo científico publicado en 2020

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

artículo científico publicado en 2018

Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy"

scientific article published on 06 August 2019

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

artículo científico publicado en 2019

Rethinking "enterotypes".

artículo científico publicado en 2014

Ribosomal RNA, the lens into life

artículo científico publicado en 2015

Role of the microbiome, probiotics, and 'dysbiosis therapy' in critical illness

artículo científico publicado en 2016

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

artículo científico

Species abundance information improves sequence taxonomy classification accuracy

scientific article published on 11 October 2019

Strains, functions and dynamics in the expanded Human Microbiome Project

artículo científico publicado en 2017

Striped UniFrac: enabling microbiome analysis at unprecedented scale

artículo científico publicado en 2018

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

artículo científico publicado en 2014

Testing GitHub projects on custom resources using unprivileged Kubernetes runners

artículo científico publicado en 2023

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

artículo científico publicado en 2012

The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder

artículo científico publicado en 2021

The Microbiome and Human Biology.

artículo científico publicado en 2017

The emergence of microbiome centres

artículo científico publicado en 2020

The impact of skin care products on skin chemistry and microbiome dynamics

artículo científico publicado en 2019

The treatment-naive microbiome in new-onset Crohn's disease

artículo científico publicado en 2014

Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients

artículo científico publicado en 2015

Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy

artículo científico publicado en 2017

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project

artículo científico publicado en 2016

Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission

artículo científico publicado en 2022

Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission

artículo científico publicado en 2022

microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data ⬇️

scientific article published in 2024

redbiom: a Rapid Sample Discovery and Feature Characterization System

scientific article published on 25 June 2019

Lista de obras de

A communal catalogue reveals Earth's multiscale microbial diversity

Activating and inhibiting connections in biological network dynamics

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults

American Gut: an Open Platform for Citizen Science Microbiome Research

Are microbiome studies ready for hypothesis-driven research?

Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection

Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

Balance Trees Reveal Microbial Niche Differentiation.

Best practices for analysing microbiomes

Boulder ALignment Editor (ALE): a web-based RNA alignment tool

Bringing the Dynamic Microbiome to Life with Animations

Calour: an Interactive, Microbe-Centric Analysis Tool

Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Collaborative cloud-enabled tools allow rapid, reproducible biological insights ⬇️

Comparison of methods for estimating the nucleotide substitution matrix

Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

Context and the human microbiome

Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects

Dynamics of the human gut microbiome in inflammatory bowel disease.

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

Enhancing untargeted metabolomics using metadata-based source annotation

Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment

Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project

Extreme Dysbiosis of the Microbiome in Critical Illness

Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake

Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Fecal Microbiota Transplant is Highly Effective in Real-World Practice: Initial Results from the FMT National Registry

Forensic identification using skin bacterial communities

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

From molecules to dynamic biological communities

GABA-modulating bacteria of the human gut microbiota

Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension

Identifying and Predicting Novelty in Microbiome Studies

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.

Meeting report: fungal its workshop (october 2012).

Methods for phylogenetic analysis of microbiome data

Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA.

Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

PyCogent: a toolkit for making sense from sequence

QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME allows analysis of high-throughput community sequencing data

Qiita: rapid, web-enabled microbiome meta-analysis

RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs

Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus

Rapid, large-scale wastewater surveillance and automated reporting system enabled early detection of nearly 85% of COVID-19 cases on a University campus

Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy"

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Rethinking "enterotypes".

Ribosomal RNA, the lens into life

Role of the microbiome, probiotics, and 'dysbiosis therapy' in critical illness