Lista de obras -

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

artículo científico publicado en 2021

Badread: simulation of error-prone long reads

artículo científico publicado en 2019

Benchmarking of long-read assemblers for prokaryote whole genome sequencing

scientific article published on 23 December 2019

Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece

scientific article published on 10 October 2019

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

artículo científico publicado en 2018

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

scientific article published on 23 October 2019

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

scientific article published on 15 April 2019

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

scientific article published on 06 April 2020

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

artículo científico publicado en 2019

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1

article

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

artículo científico publicado en 2022

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

artículo científico publicado en 2015

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

artículo científico publicado en 2016

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2

artículo científico publicado en 2019

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes.

artículo científico publicado en 2018

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

artículo científico publicado en 2018

Performance of neural network basecalling tools for Oxford Nanopore sequencing

scientific article published on 24 June 2019

Polypolish: Short-read polishing of long-read bacterial genome assemblies

artículo científico publicado en 2022

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

artículo científico publicado en 2016

Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258

artículo científico publicado en 2019

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

artículo científico publicado en 2017

Lista de obras de

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

Badread: simulation of error-prone long reads

Benchmarking of long-read assemblers for prokaryote whole genome sequencing

Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes.

Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.

Performance of neural network basecalling tools for Oxford Nanopore sequencing

Polypolish: Short-read polishing of long-read bacterial genome assemblies

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward

Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads