Lista de obras -

A chemostat array enables the spatio-temporal analysis of the yeast proteome

artículo científico publicado en 2013

A new promoter element associated with daily time keeping in Drosophila

artículo científico publicado en 2017

A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning

artículo científico publicado en 2009

A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations

artículo científico publicado en 2003

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

artículo científico publicado en 2003

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics

artículo científico publicado en 2013

Analysis of precision in chemical oscillators: implications for circadian clocks ⬇️

artículo científico publicado el 16 de septiembre de 2013

Analysis of the dynamics of limb transcriptomes during mouse development

artículo científico publicado en 2011

Cell-type-specific transcriptomics in chimeric models using transcriptome-based masks

artículo científico publicado en 2005

Cellular oscillators: rhythmic gene expression and metabolism

artículo científico publicado en 2005

Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters

artículo científico publicado en 2014

Characterization of the expression ratio noise structure in high-density oligonucleotide arrays.

artículo científico publicado en 2001

Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with E boxes and requires the proteasome

artículo científico publicado en 2012

Circadian and Feeding Rhythms Orchestrate the Diurnal Liver Acetylome.

artículo científico publicado en 2017

Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver

artículo científico publicado en 2015

Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver

artículo científico publicado en 2018

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.

artículo científico publicado en 2013

Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria

artículo científico publicado en 2005

Circadian gene expression is resilient to large fluctuations in overall transcription rates

artículo científico publicado en 2008

Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally

artículo científico publicado en 2012

Collective synchronization in populations of globally coupled phase oscillators with drifting frequencies.

artículo científico publicado en 2006

Computational Analysis of Protein–DNA Interactions from ChIP-seq Data ⬇️

artículo científico publicado el 1 de enero de 2012

Control of daily transcript oscillations in Drosophila by light and the circadian clock

artículo científico publicado en 2006

Cross-regulatory circuits linking inflammation, high-fat diet, and the circadian clock

artículo científico publicado en 2018

DNA hybridization to mismatched templates: a chip study

artículo científico publicado en 2002

Dynamical signatures of cellular fluctuations and oscillator stability in peripheral circadian clocks

artículo científico publicado en 2007

Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

artículo científico publicado en 2002

Engineered signaling centers for the spatially controlled patterning of human pluripotent stem cells

artículo científico publicado en 2019

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.

artículo científico publicado en 2009

Freedom and rules: the acquisition and reprogramming of a bird's learned song

artículo científico publicado en 2005

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles

artículo científico publicado en 2012

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver

artículo científico publicado en 2011

Guidelines for Genome-Scale Analysis of Biological Rhythms

artículo científico publicado en 2017

How to tell time: advances in decoding circadian phase from omics snapshots

artículo científico publicado en 2020

Identifying synergistic regulation involving c-Myc and sp1 in human tissues

artículo científico publicado en 2007

In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis

artículo científico publicado en 2005

Integration of light and temperature in the regulation of circadian gene expression in Drosophila

artículo científico publicado en 2007

Low-dimensional Dynamics of Two Coupled Biological Oscillators

scientific article published on 05 August 2019

Mammalian genes are transcribed with widely different bursting kinetics

artículo científico publicado en 2011

Memory and relatedness of transcriptional activity in mammalian cell lineages

scientific article published on 14 March 2019

Modeling an evolutionary conserved circadian cis-element

artículo científico publicado en 2008

Modulation of transcriptional burst frequency by histone acetylation

artículo científico publicado en 2018

Molecular and statistical tools for circadian transcript profiling

artículo científico publicado en 2005

Molecular signature of human embryonic stem cells and its comparison with the mouse

artículo científico publicado en 2003

Network inference by combining biologically motivated regulatory constraints with penalized regression

artículo científico publicado en 2009

Non-circadian expression masking clock-driven weak transcription rhythms in U2OS cells.

artículo científico publicado en 2014

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver. ⬇️

scientific article published on 31 October 2016

Origins and consequences of transcriptional discontinuity

artículo científico

Oscillating and stable genome topologies underlie hepatic physiological rhythms during the circadian cycle

artículo científico publicado en 2021

Probabilistic base calling of Solexa sequencing data

artículo científico publicado en 2008

Production of Ribosome Components in Effector CD4+ T Cells Is Accelerated by TCR Stimulation and Coordinated by ERK-MAPK

article

Quantitative relationships between SMAD dynamics and target gene activation kinetics in single live cells

article

Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors

artículo científico publicado en 2009

Reply to “Comment on ‘Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays’”

Representing perturbed dynamics in biological network models

artículo científico publicado en 2007

Revealing Assembly of a Pore-Forming Complex Using Single-Cell Kinetic Analysis and Modeling.

artículo científico publicado en 2016

Rhythms of the Genome: Circadian Dynamics from Chromatin Topology, Tissue-Specific Gene Expression, to Behavior

article

Ribosome profiling and dynamic regulation of translation in mammals

artículo científico publicado en 2017

Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver

scientific article published on 15 April 2020

Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

artículo científico publicado en 2014

Sex-dimorphic and age-dependent organization of 24-hour gene expression rhythms in humans

artículo científico publicado en 2023

Similarities and differences of polyadenylation signals in human and fly.

artículo científico publicado en 2006

Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell-Cycle Dependence of Degradation Rates

scientific article published on 23 August 2018

Sleep-wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex

scientific article published on 27 November 2019

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays

artículo científico publicado en 2003

Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico.

artículo científico publicado en 2010

Stochastic phase oscillator models for circadian clocks

artículo científico publicado en 2008

Structure of silent transcription intervals and noise characteristics of mammalian genes

artículo científico publicado en 2015

Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World

artículo científico publicado en 2016

Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp

artículo científico publicado en 2016

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism

article

The circadian clock coordinates ribosome biogenesis

artículo científico publicado en 2013

The nodal precursor acting via activin receptors induces mesoderm by maintaining a source of its convertases and BMP4.

artículo científico publicado en 2006

The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae.

artículo científico publicado en 2010

Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs

artículo científico publicado en 2017

Transcriptional regulatory logic of the diurnal cycle in the mouse liver

artículo científico publicado en 2017

What determines eukaryotic translation elongation: recent molecular and quantitative analyses of protein synthesis

artículo científico publicado en 2020

What shapes eukaryotic transcriptional bursting?

artículo científico publicado en 2017

Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains

artículo científico publicado en 2011

Lista de obras de

A chemostat array enables the spatio-temporal analysis of the yeast proteome

A new promoter element associated with daily time keeping in Drosophila

A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning

A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics

Analysis of precision in chemical oscillators: implications for circadian clocks ⬇️

Analysis of the dynamics of limb transcriptomes during mouse development

Cell-type-specific transcriptomics in chimeric models using transcriptome-based masks

Cellular oscillators: rhythmic gene expression and metabolism

Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters

Characterization of the expression ratio noise structure in high-density oligonucleotide arrays.

Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with E boxes and requires the proteasome

Circadian and Feeding Rhythms Orchestrate the Diurnal Liver Acetylome.

Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver

Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.

Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria

Circadian gene expression is resilient to large fluctuations in overall transcription rates

Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally

Collective synchronization in populations of globally coupled phase oscillators with drifting frequencies.

Computational Analysis of Protein–DNA Interactions from ChIP-seq Data ⬇️

Control of daily transcript oscillations in Drosophila by light and the circadian clock

Cross-regulatory circuits linking inflammation, high-fat diet, and the circadian clock

DNA hybridization to mismatched templates: a chip study

Dynamical signatures of cellular fluctuations and oscillator stability in peripheral circadian clocks

Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

Engineered signaling centers for the spatially controlled patterning of human pluripotent stem cells

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays.

Freedom and rules: the acquisition and reprogramming of a bird's learned song

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver

Guidelines for Genome-Scale Analysis of Biological Rhythms

How to tell time: advances in decoding circadian phase from omics snapshots

Identifying synergistic regulation involving c-Myc and sp1 in human tissues

In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis

Integration of light and temperature in the regulation of circadian gene expression in Drosophila

Low-dimensional Dynamics of Two Coupled Biological Oscillators

Mammalian genes are transcribed with widely different bursting kinetics

Memory and relatedness of transcriptional activity in mammalian cell lineages

Modeling an evolutionary conserved circadian cis-element

Modulation of transcriptional burst frequency by histone acetylation

Molecular and statistical tools for circadian transcript profiling

Molecular signature of human embryonic stem cells and its comparison with the mouse

Network inference by combining biologically motivated regulatory constraints with penalized regression

Non-circadian expression masking clock-driven weak transcription rhythms in U2OS cells.

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver. ⬇️

Origins and consequences of transcriptional discontinuity

Oscillating and stable genome topologies underlie hepatic physiological rhythms during the circadian cycle

Probabilistic base calling of Solexa sequencing data

Production of Ribosome Components in Effector CD4+ T Cells Is Accelerated by TCR Stimulation and Coordinated by ERK-MAPK

Quantitative relationships between SMAD dynamics and target gene activation kinetics in single live cells

Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors

Reply to “Comment on ‘Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays’”

Representing perturbed dynamics in biological network models

Revealing Assembly of a Pore-Forming Complex Using Single-Cell Kinetic Analysis and Modeling.

Rhythms of the Genome: Circadian Dynamics from Chromatin Topology, Tissue-Specific Gene Expression, to Behavior

Ribosome profiling and dynamic regulation of translation in mammals

Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver

Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

Sex-dimorphic and age-dependent organization of 24-hour gene expression rhythms in humans

Similarities and differences of polyadenylation signals in human and fly.

Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell-Cycle Dependence of Degradation Rates

Sleep-wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays

Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico.

Stochastic phase oscillator models for circadian clocks

Structure of silent transcription intervals and noise characteristics of mammalian genes

Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World

Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism

The circadian clock coordinates ribosome biogenesis

The nodal precursor acting via activin receptors induces mesoderm by maintaining a source of its convertases and BMP4.

The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae.

Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs

Transcriptional regulatory logic of the diurnal cycle in the mouse liver

What determines eukaryotic translation elongation: recent molecular and quantitative analyses of protein synthesis

What shapes eukaryotic transcriptional bursting?

Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains