Lista de obras -

A computational study of liposome logic: towards cellular computing from the bottom up.

artículo científico publicado en 2010

A last-in first-out stack data structure implemented in DNA

scientific article published on 11 August 2021

A mixed discrete-continuous attribute list representation for large scale classification domains

A tale of human-competitiveness in bioinformatics

Analysing BioHEL using challenging boolean functions

Analysing bioHEL using challenging boolean functions

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

artículo científico publicado en 2009

Automated alphabet reduction for protein datasets.

artículo científico publicado en 2009

Automated alphabet reduction method with evolutionary algorithms for protein structure prediction

Automated self-assembly programming paradigm: The impact of network topology

Automatic Selection of Verification Tools for Efficient Analysis of Biochemical Models

artículo científico publicado en 2018

Bacteria clustering by polymers induces the expression of quorum-sensing-controlled phenotypes

artículo científico publicado en 2013

Complexity measurement based on information theory and kolmogorov complexity

artículo científico publicado en 2015

Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features.

artículo científico publicado en 2012

Controlled polymer synthesis--from biomimicry towards synthetic biology.

artículo científico publicado en 2009

Correction to Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations

scientific article published on 01 March 2018

Data Mining in Proteomics with Learning Classifier Systems

Decellularised extracellular matrix-derived peptides from neural retina and retinal pigment epithelium enhance the expression of synaptic markers and light responsiveness of human pluripotent stem cell derived retinal organoids

scientific article published on 22 January 2019

Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami

artículo científico publicado en 2017

Developing a simple method to enhance the generation of cone and rod photoreceptors in pluripotent stem cell-derived retinal organoids

scientific article published on 31 October 2019

Disrupted alternative splicing for genes implicated in splicing and ciliogenesis causes PRPF31 retinitis pigmentosa ⬇️

artículo científico publicado en 2018

Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations

artículo científico publicado en 2019

EnrichNet: network-based gene set enrichment analysis.

artículo científico publicado en 2012

Evolutionary design of the energy function for protein structure prediction

Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology

scholarly article published 2010

Evolving cell models for systems and synthetic biology

artículo científico publicado en 2010

Evolving tiles for automated self-assembly design

article

Extending pathways and processes using molecular interaction networks to analyse cancer genome data

artículo científico publicado en 2010

Extracellular matrix component expression in human pluripotent stem cell-derived retinal organoids recapitulates retinogenesis in vivo and reveals an important role for IMPG1 and CD44 in the development of photoreceptors and interphotoreceptor matri

artículo científico publicado en 2018

From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems

Functional networks inference from rule-based machine learning models.

artículo científico publicado en 2016

GP challenge: evolving energy function for protein structure prediction

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

artículo científico publicado en 2011

Goethe's dream. Challenges and opportunities for synthetic biology

artículo científico publicado en 2009

Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example

artículo científico publicado en 2014

Heuristic for maximizing DNA reuse in synthetic DNA library assembly

artículo científico publicado en 2014

Improving the scalability of rule-based evolutionary learning

Is there an optimal level of open-endedness in prebiotic evolution?

artículo científico publicado en 2012

Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon.

artículo científico publicado en 2018

JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks.

artículo científico publicado en 2013

Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering

artículo científico publicado en 2020

Meta-stochastic simulation of biochemical models for systems and synthetic biology

artículo científico publicado en 2014

Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding

OptDesign: Identifying Optimum Design Strategies in Strain Engineering for Biochemical Production

artículo científico publicado en 2022

P systems applications to systems biology

artículo científico publicado en 2007

Performance and efficiency of memetic Pittsburgh learning classifier systems

artículo científico publicado en 2009

Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World

artículo científico publicado en 2018

Post-processing operators for decision lists

Predicting species emergence in simulated complex pre-biotic networks

artículo científico publicado en 2018

Prediction of recursive convex hull class assignments for protein residues.

artículo científico publicado en 2008

Prediction of topological contacts in proteins using learning classifier systems

ProCKSI: a decision support system for Protein (structure) Comparison, Knowledge, Similarity and Information

artículo científico publicado en 2007

Protein interactions within and between two F-type type IV secretion systems

scientific article published on 01 August 2020

Qualitative and quantitative analysis of systems and synthetic biology constructs using P systems

artículo científico publicado en 2014

RERG (Ras-like, oestrogen-regulated, growth-inhibitor) expression in breast cancer: a marker of ER-positive luminal-like subtype.

artículo científico publicado en 2010

Search strategies in structural bioinformatics.

artículo científico publicado en 2008

Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations.

artículo científico publicado en 2017

Speeding up the evaluation of evolutionary learning systems using GPGPUs

Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study

artículo científico publicado en 2010

Synthesis and cell-free cloning of DNA libraries using programmable microfluidics

artículo científico publicado en 2015

Synthetic biology gains momentum in Europe

artículo científico publicado en 2010

The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology

artículo científico publicado en 2011

The imitation game—a computational chemical approach to recognizing life

artículo científico publicado en 2006

The ten grand challenges of synthetic life

artículo científico publicado en 2011

TopoGSA: network topological gene set analysis

artículo científico publicado en 2010

Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination

artículo científico publicado en 2013

Transcriptional profiling of coaggregation interactions between Streptococcus gordonii and Veillonella parvula by Dual RNA-Seq

artículo científico publicado en 2019

Using rule-based machine learning for candidate disease gene prioritization and sample classification of cancer gene expression data

artículo científico publicado en 2012

Versioning biological cells for trustworthy cell engineering

artículo científico publicado en 2022

vrmlgen: An R Package for 3D Data Visualization on the Web

article published in 2010

Lista de obras de

A computational study of liposome logic: towards cellular computing from the bottom up.

A last-in first-out stack data structure implemented in DNA

A mixed discrete-continuous attribute list representation for large scale classification domains

A tale of human-competitiveness in bioinformatics

Analysing BioHEL using challenging boolean functions

Analysing bioHEL using challenging boolean functions

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

Automated alphabet reduction for protein datasets.

Automated alphabet reduction method with evolutionary algorithms for protein structure prediction

Automated self-assembly programming paradigm: The impact of network topology

Automatic Selection of Verification Tools for Efficient Analysis of Biochemical Models

Bacteria clustering by polymers induces the expression of quorum-sensing-controlled phenotypes

Complexity measurement based on information theory and kolmogorov complexity

Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features.

Controlled polymer synthesis--from biomimicry towards synthetic biology.

Correction to Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations

Data Mining in Proteomics with Learning Classifier Systems

Decellularised extracellular matrix-derived peptides from neural retina and retinal pigment epithelium enhance the expression of synaptic markers and light responsiveness of human pluripotent stem cell derived retinal organoids

Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami

Developing a simple method to enhance the generation of cone and rod photoreceptors in pluripotent stem cell-derived retinal organoids

Disrupted alternative splicing for genes implicated in splicing and ciliogenesis causes PRPF31 retinitis pigmentosa ⬇️

Easybiotics: a GUI for 3D physical modelling of multi-species bacterial populations

EnrichNet: network-based gene set enrichment analysis.

Evolutionary design of the energy function for protein structure prediction

Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology

Evolving cell models for systems and synthetic biology

Evolving tiles for automated self-assembly design

Extending pathways and processes using molecular interaction networks to analyse cancer genome data

Extracellular matrix component expression in human pluripotent stem cell-derived retinal organoids recapitulates retinogenesis in vivo and reveals an important role for IMPG1 and CD44 in the development of photoreceptors and interphotoreceptor matri

From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems

Functional networks inference from rule-based machine learning models.

GP challenge: evolving energy function for protein structure prediction

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

Goethe's dream. Challenges and opportunities for synthetic biology

Hard Data Analytics Problems Make for Better Data Analysis Algorithms: Bioinformatics as an Example

Heuristic for maximizing DNA reuse in synthetic DNA library assembly

Improving the scalability of rule-based evolutionary learning

Is there an optimal level of open-endedness in prebiotic evolution?

Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon.

JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks.

Linking Engineered Cells to Their Digital Twins: A Version Control System for Strain Engineering

Meta-stochastic simulation of biochemical models for systems and synthetic biology

Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding

OptDesign: Identifying Optimum Design Strategies in Strain Engineering for Biochemical Production

P systems applications to systems biology

Performance and efficiency of memetic Pittsburgh learning classifier systems

Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World

Post-processing operators for decision lists

Predicting species emergence in simulated complex pre-biotic networks

Prediction of recursive convex hull class assignments for protein residues.

Prediction of topological contacts in proteins using learning classifier systems

ProCKSI: a decision support system for Protein (structure) Comparison, Knowledge, Similarity and Information

Protein interactions within and between two F-type type IV secretion systems

Qualitative and quantitative analysis of systems and synthetic biology constructs using P systems

RERG (Ras-like, oestrogen-regulated, growth-inhibitor) expression in breast cancer: a marker of ER-positive luminal-like subtype.

Search strategies in structural bioinformatics.

Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations.

Speeding up the evaluation of evolutionary learning systems using GPGPUs

Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study

Synthesis and cell-free cloning of DNA libraries using programmable microfluidics

Synthetic biology gains momentum in Europe

The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology

The imitation game—a computational chemical approach to recognizing life

The ten grand challenges of synthetic life

TopoGSA: network topological gene set analysis

Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination

Transcriptional profiling of coaggregation interactions between Streptococcus gordonii and Veillonella parvula by Dual RNA-Seq

Using rule-based machine learning for candidate disease gene prioritization and sample classification of cancer gene expression data

Versioning biological cells for trustworthy cell engineering

vrmlgen: An R Package for 3D Data Visualization on the Web