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3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries

artículo científico publicado en 2020

A 3-Dimensional Trimeric β-Barrel Model for Chlamydia MOMP Contains Conserved and Novel Elements of Gram-Negative Bacterial Porins

artículo científico publicado el 25 de julio de 2013

A Celebration of Women in Computational Chemistry

artículo científico publicado en 2019

A Multiscale Coarse-grained Model of the SARS-CoV-2 Virion

artículo científico publicado en 2020

An Integrated Markov State Model and Path Metadynamics Approach To Characterize Drug Binding Processes

scientific article published on 05 September 2019

Back to the Future: Can Physical Models of Passive Membrane Permeability Help Reduce Drug Candidate Attrition and Move Us Beyond QSPR?

artículo científico publicado el 1 de enero de 2013

Biography of Klaus Schulten.

artículo científico publicado en 2017

COVID19 - Computational Chemists Meet the Moment

scientific article published on 01 December 2020

Cation-Driven Lipopolysaccharide Morphological Changes Impact Heterogeneous Reactions of Nitric Acid with Sea Spray Aerosol Particles

artículo científico publicado en 2021

Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B.

artículo científico publicado en 2017

D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings

artículo científico publicado en 2019

D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies

scientific article published on 23 January 2020

Determinants of Oligonucleotide Selectivity of APOBEC3B

scientific article published on 10 September 2018

Development of Dimethylisoxazole-Attached Imidazo[1,2-<i>a</i>]pyridines as Potent and Selective CBP/P300 Inhibitors

artículo científico publicado en 2021

Dynamics and Molecular Mechanisms of p53 Transcriptional Activation

article

Editorial: Method and Data Sharing and Reproducibility of Scientific Results

artículo científico publicado en 2020

Electrostatic Interactions as Mediators in the Allosteric Activation of Protein Kinase A RIα.

artículo científico publicado en 2017

Faces of Contemporary CryoEM Information and Modeling

scientific article published on 01 May 2020

Frontiers in CryoEM Modeling

artículo científico publicado en 2019

Gaussian Accelerated Molecular Dynamics in OpenMM

artículo científico publicado en 2022

Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling

artículo científico publicado en 2021

Impact of the Journal of Chemical Information and Modeling Special Issue on Women in Computational Chemistry

artículo científico publicado en 2020

Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations

scientific article published on 10 September 2019

Insights into the behavior of nonanoic acid and its conjugate base at the air/water interface through a combined experimental and theoretical approach

artículo científico publicado en 2020

Magnesium-Induced Nucleophile Activation in the Guanylyltransferase mRNA Capping Enzyme

artículo científico publicado el 12 de diciembre de 2012

Mechanism of 150-cavity formation in influenza neuraminidase

artículo científico publicado el 12 de julio de 2011

Modeling the pharmacodynamics of passive membrane permeability

artículo científico publicado el 1 de noviembre de 2011

Molecular Simulations Reveal an Unresolved Conformation of the Type IA Protein Kinase A Regulatory Subunit and Suggest Its Role in the cAMP Regulatory Mechanism.

artículo científico publicado en 2017

Molecular Simulations of Aromatase Reveal New Insights Into the Mechanism of Ligand Binding

artículo científico publicado el 9 de agosto de 2013

Molecular-Level Simulation of Pandemic Influenza Glycoproteins

artículo científico publicado el 1 de enero de 2012

Neolymphostin A is a Covalent Phosphoinositide-3-kinase (PI3-K)/Mammalian Target of Rapamycin (mTOR) Dual Inhibitor that Employs an Unusual Electrophilic Vinylogous Ester

artículo científico publicado en 2018

POVME 3.0: Software for Mapping Binding Pocket Flexibility.

artículo científico publicado en 2017

Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor κB RelA Subunit

artículo científico publicado en 2018

SARS-CoV-2 escape in vitro from a highly neutralizing COVID-19 convalescent plasma

artículo científico publicado en 2020

SEEKR: Simulation Enabled Estimation of Kinetic Rates, A Computational Tool to Estimate Molecular Kinetics and Its Application to Trypsin-Benzamidine Binding.

artículo científico publicado en 2017

Structural basis for ligand modulation of the CCR2 conformational landscape

artículo científico publicado en 2019

Surfactant Charge Modulates Structure and Stability of Lipase-Embedded Monolayers at Marine-Relevant Aerosol Surfaces

artículo científico publicado en 2019

The flexibility of ACE2 in the context of SARS-CoV-2 infection

scientific article published on 16 September 2020

Voyager – An Innovative Computational Resource for Artificial Intelligence &amp; Machine Learning Applications in Science and Engineering

artículo científico publicado en 2023

Words Matter: On the Debate over Free Speech, Inclusivity, and Academic Excellence

artículo científico publicado en 2022