Lista de obras -

A Protocol for Computer-Based Protein Structure and Function Prediction ⬇️

artículo científico publicado el 3 de noviembre de 2011

A Variational Model for Oligomer-Formation Process of GNNQQNY Peptide from Yeast Prion Protein Sup35 ⬇️

artículo científico publicado el 7 de febrero de 2012

ATPbind: Accurate Protein-ATP Binding Site Prediction by Combining Sequence-Profiling and Structure-Based Comparisons.

artículo científico publicado en 2018

Ab Initio Structural Modeling of and Experimental Validation for Chlamydia trachomatis Protein CT296 Reveal Structural Similarity to Fe(II) 2-Oxoglutarate-Dependent Enzymes ⬇️

artículo científico publicado el 30 de septiembre de 2011

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge‐based force field ⬇️

artículo científico publicado el 13 de abril de 2012

Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome

artículo científico publicado en 2002

Approaches to ab initio molecular replacement of α-helical transmembrane proteins.

artículo científico publicado en 2017

Assembling multidomain protein structures through analogous global structural alignments

scientific article published on 24 July 2019

BSP‐SLIM: A blind low‐resolution ligand‐protein docking approach using predicted protein structures ⬇️

artículo científico publicado el 4 de octubre de 2011

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge

scientific article published on 18 October 2019

Computational Design of Peptides to Block Binding of the SARS-CoV-2 Spike Protein to Human ACE2

artículo científico publicado en 2020

Computational Protein Design and Large-Scale Assessment by I-TASSER Structure Assembly Simulations ⬇️

artículo científico publicado el 15 de febrero de 2011

Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

artículo científico publicado en 2021

Deep-learning contact-map guided protein structure prediction in CASP13

artículo científico publicado en 2019

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

scientific article published on 17 October 2019

Dissecting the Kinetic Process of Amyloid Fiber Formation through Asymptotic Analysis ⬇️

artículo científico publicado el 13 de diciembre de 2011

DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism

artículo científico publicado en 2019

Ensembling multiple raw coevolutionary features with deep residual neural networks for contact-map prediction in CASP13

scientific article published on 22 August 2019

Fitting Low-Resolution Protein Structures into Cryo-EM Density Maps by Multiobjective Optimization of Global and Local Correlations

scientific article published on 05 January 2021

Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families

scientific article published on 01 November 2019

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

artículo científico publicado en 2021

Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2

artículo científico publicado en 2020

Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2

scientific article published on 11 September 2020

Improving Protein Template Recognition by Using Small-Angle X-Ray Scattering Profiles ⬇️

artículo científico publicado el 7 de diciembre de 2011

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

artículo científico publicado en 2024

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization ⬇️

artículo científico publicado el 15 de noviembre de 2011

MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models

artículo científico publicado en 2018

Parkin, A Top Level Manager in the Cells Sanitation Department ⬇️

artículo científico publicado el 18 de abril de 2011

Potential of Three Ethnomedicinal Plants as Antisickling Agents.

artículo científico publicado en 2016

Predicting nucleic acid binding interfaces from structural models of proteins ⬇️

artículo científico publicado el 16 de noviembre de 2011

Prediction of Inhibitory Activity of Epidermal Growth Factor Receptor Inhibitors Using Grid Search-Projection Pursuit Regression Method ⬇️

artículo científico publicado el 21 de julio de 2011

Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps

scientific article published on 16 October 2020

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1

artículo científico publicado en 2020

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

artículo científico publicado en 2021

Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination ⬇️

artículo científico publicado el 13 de julio de 2011

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering

scientific article published on 14 August 2020

Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement ⬇️

artículo científico publicado el 3 de mayo de 2012

Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17

artículo científico publicado en 2018

TOUCHSTONE II: a new approach to ab initio protein structure prediction

artículo científico publicado en 2003

TOUCHSTONE: a unified approach to protein structure prediction.

artículo científico publicado en 2003

TOUCHSTONEX: protein structure prediction with sparse NMR data.

artículo científico publicado en 2003

Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.

artículo científico publicado en 2017

The structure of the large regulatory α subunit of phosphorylase kinase examined by modeling and hydrogen-deuterium exchange.

artículo científico publicado en 2017

Toward optimal fragment generations for ab initio protein structure assembly ⬇️

artículo científico publicado el 16 de octubre de 2012

Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries

artículo científico publicado en 2019

Lista de obras de

A Protocol for Computer-Based Protein Structure and Function Prediction ⬇️

A Variational Model for Oligomer-Formation Process of GNNQQNY Peptide from Yeast Prion Protein Sup35 ⬇️

ATPbind: Accurate Protein-ATP Binding Site Prediction by Combining Sequence-Profiling and Structure-Based Comparisons.

Ab Initio Structural Modeling of and Experimental Validation for Chlamydia trachomatis Protein CT296 Reveal Structural Similarity to Fe(II) 2-Oxoglutarate-Dependent Enzymes ⬇️

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge‐based force field ⬇️

Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome

Approaches to ab initio molecular replacement of α-helical transmembrane proteins.

Assembling multidomain protein structures through analogous global structural alignments

BSP‐SLIM: A blind low‐resolution ligand‐protein docking approach using predicted protein structures ⬇️

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge

Computational Design of Peptides to Block Binding of the SARS-CoV-2 Spike Protein to Human ACE2

Computational Protein Design and Large-Scale Assessment by I-TASSER Structure Assembly Simulations ⬇️

Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

Deep-learning contact-map guided protein structure prediction in CASP13

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

Dissecting the Kinetic Process of Amyloid Fiber Formation through Asymptotic Analysis ⬇️

DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism

Ensembling multiple raw coevolutionary features with deep residual neural networks for contact-map prediction in CASP13

Fitting Low-Resolution Protein Structures into Cryo-EM Density Maps by Multiobjective Optimization of Global and Local Correlations

Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2

Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2

Improving Protein Template Recognition by Using Small-Angle X-Ray Scattering Profiles ⬇️

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization ⬇️

MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models

Parkin, A Top Level Manager in the Cells Sanitation Department ⬇️

Potential of Three Ethnomedicinal Plants as Antisickling Agents.

Predicting nucleic acid binding interfaces from structural models of proteins ⬇️

Prediction of Inhibitory Activity of Epidermal Growth Factor Receptor Inhibitors Using Grid Search-Projection Pursuit Regression Method ⬇️

Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps

Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination ⬇️

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering

Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement ⬇️

Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17

TOUCHSTONE II: a new approach to ab initio protein structure prediction

TOUCHSTONE: a unified approach to protein structure prediction.

TOUCHSTONEX: protein structure prediction with sparse NMR data.

Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.

The structure of the large regulatory α subunit of phosphorylase kinase examined by modeling and hydrogen-deuterium exchange.

Toward optimal fragment generations for ab initio protein structure assembly ⬇️

Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries