Lista de obras -

A computational algebra approach to the reverse engineering of gene regulatory networks

artículo científico publicado en 2004

A computational model of invasive aspergillosis in the lung and the role of iron

artículo científico publicado en 2016

A general map of iron metabolism and tissue-specific subnetworks

artículo científico publicado en 2009

A mathematical framework for agent based models of complex biological networks.

artículo científico publicado en 2010

A mathematical model of skeletal muscle disease and immune response in the mdx mouse.

artículo científico publicado en 2014

A network biology approach to denitrification in Pseudomonas aeruginosa

artículo científico publicado en 2015

A systems biology approach to iron metabolism

artículo científico publicado en 2014

A systems biology view of cancer

scientific article published on 06 June 2009

A virtual look at Epstein-Barr virus infection: biological interpretations

artículo científico publicado en 2007

ADAM: analysis of discrete models of biological systems using computer algebra

artículo científico publicado en 2011

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

artículo científico publicado en 2017

Algebraic Methods in Mathematical Biology ⬇️

artículo científico publicado el 1 de abril de 2011

Algebraic models of biochemical networks

artículo científico publicado en 2009

AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.

artículo científico publicado en 2016

An algebra-based method for inferring gene regulatory networks.

artículo científico publicado en 2014

An important role for periplasmic storage in Pseudomonas aeruginosa copper homeostasis revealed by a combined experimental and computational modeling study

artículo científico publicado en 2018

Bioinformatics tools for cancer metabolomics

artículo científico publicado en 2011

Comparison of reverse-engineering methods using an in silico network

artículo científico publicado en 2007

Computational Systems Biology: Discrete Models of Gene Regulation Networks

article

Computer Algebra in Systems Biology

scholarly article by R. Laubenbacher and B. Sturmfels published in December 2009

Connecting the molecular function of microRNAs to cell differentiation dynamics

scientific article published on 25 September 2019

Control of Intracellular Molecular Networks Using Algebraic Methods

artículo científico publicado en 2019

Costimulation Endows Immunotherapeutic CD8 T Cells with IL-36 Responsiveness during Aerobic Glycolysis

artículo científico publicado en 2015

Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress

artículo científico publicado en 2011

Dimension Reduction of Large Sparse AND-NOT Network Models

artículo científico publicado en 2015

Discretization of time series data

artículo científico publicado en 2010

Dynamics of semilattice networks with strongly connected dependency graph

article

Editorial

artículo científico publicado en 2016

Editorial

artículo científico publicado en 2016

Editorial

artículo científico publicado en 2018

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

artículo científico publicado en 2019

Identification of control targets in Boolean molecular network models via computational algebra. ⬇️

artículo científico publicado en 2016

Inference of Ecological Interaction Networks

Iron acquisition and oxidative stress response in aspergillus fumigatus

artículo científico publicado en 2015

Mathematical biology education: beyond calculus

artículo científico publicado en 2009

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

scientific article published in 2021

Modeling stochasticity and variability in gene regulatory networks

artículo científico publicado en 2012

Multi-scale mechanistic modelling of the host defence in invasive aspergillosis reveals leucocyte activation and iron acquisition as drivers of infection outcome

artículo científico publicado en 2022

Nested Canalyzing, Unate Cascade, and Polynomial Functions.

artículo científico publicado en 2007

Optimal harvesting for a predator-prey agent-based model using difference equations

artículo científico publicado en 2015

Parameter estimation for Boolean models of biological networks

PlantSimLab - a modeling and simulation web tool for plant biologists

artículo científico publicado en 2019

Polynomial algebra of discrete models in systems biology

artículo científico publicado en 2010

Regulatory patterns in molecular interaction networks ⬇️

artículo científico publicado el 24 de agosto de 2011

Simulating Epstein-Barr virus infection with C-ImmSim.

artículo científico publicado en 2007

Stabilizing gene regulatory networks through feedforward loops ⬇️

artículo científico publicado el 1 de junio de 2013

Steady state analysis of Boolean molecular network models via model reduction and computational algebra

artículo científico publicado en 2014

The contribution of microRNA-mediated regulation to short- and long-term gene expression predictability

artículo científico publicado en 2019

The core control system of intracellular iron homeostasis: A mathematical model ⬇️

artículo científico publicado el 23 de enero de 2012

The dynamics of conjunctive and disjunctive Boolean network models.

artículo científico publicado en 2010

The effect of negative feedback loops on the dynamics of boolean networks

artículo científico publicado en 2008

The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.

artículo científico publicado en 2013

The innate immune response to ischemic injury: a multiscale modeling perspective

artículo científico publicado en 2018

Topological Data Analysis

artículo científico publicado en 2019

Lista de obras de

A computational algebra approach to the reverse engineering of gene regulatory networks

A computational model of invasive aspergillosis in the lung and the role of iron

A general map of iron metabolism and tissue-specific subnetworks

A mathematical framework for agent based models of complex biological networks.

A mathematical model of skeletal muscle disease and immune response in the mdx mouse.

A network biology approach to denitrification in Pseudomonas aeruginosa

A systems biology approach to iron metabolism

A systems biology view of cancer

A virtual look at Epstein-Barr virus infection: biological interpretations

ADAM: analysis of discrete models of biological systems using computer algebra

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Algebraic Methods in Mathematical Biology ⬇️

Algebraic models of biochemical networks

AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.

An algebra-based method for inferring gene regulatory networks.

An important role for periplasmic storage in Pseudomonas aeruginosa copper homeostasis revealed by a combined experimental and computational modeling study

Bioinformatics tools for cancer metabolomics

Comparison of reverse-engineering methods using an in silico network

Computational Systems Biology: Discrete Models of Gene Regulation Networks

Computer Algebra in Systems Biology

Connecting the molecular function of microRNAs to cell differentiation dynamics

Control of Intracellular Molecular Networks Using Algebraic Methods

Costimulation Endows Immunotherapeutic CD8 T Cells with IL-36 Responsiveness during Aerobic Glycolysis

Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress

Dimension Reduction of Large Sparse AND-NOT Network Models

Discretization of time series data

Dynamics of semilattice networks with strongly connected dependency graph

Editorial

Editorial

Editorial

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

Identification of control targets in Boolean molecular network models via computational algebra. ⬇️

Inference of Ecological Interaction Networks

Iron acquisition and oxidative stress response in aspergillus fumigatus

Mathematical biology education: beyond calculus

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

Modeling stochasticity and variability in gene regulatory networks

Multi-scale mechanistic modelling of the host defence in invasive aspergillosis reveals leucocyte activation and iron acquisition as drivers of infection outcome

Nested Canalyzing, Unate Cascade, and Polynomial Functions.

Optimal harvesting for a predator-prey agent-based model using difference equations

Parameter estimation for Boolean models of biological networks

PlantSimLab - a modeling and simulation web tool for plant biologists

Polynomial algebra of discrete models in systems biology

Regulatory patterns in molecular interaction networks ⬇️

Simulating Epstein-Barr virus infection with C-ImmSim.

Stabilizing gene regulatory networks through feedforward loops ⬇️

Steady state analysis of Boolean molecular network models via model reduction and computational algebra

The contribution of microRNA-mediated regulation to short- and long-term gene expression predictability

The core control system of intracellular iron homeostasis: A mathematical model ⬇️

The dynamics of conjunctive and disjunctive Boolean network models.

The effect of negative feedback loops on the dynamics of boolean networks

The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.

The innate immune response to ischemic injury: a multiscale modeling perspective

Topological Data Analysis