Lista de obras -

A fast likelihood solution to the genetic clustering problem.

artículo científico publicado en 2018

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

artículo científico publicado en 2015

A simple approach to measure transmissibility and forecast incidence

artículo científico publicado en 2017

A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus

artículo científico publicado en 2010

An Aboriginal Australian genome reveals separate human dispersals into Asia

artículo científico publicado en 2011

Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England

artículo científico publicado en 2020

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data

article

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

artículo científico publicado en 2014

Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation

artículo científico publicado en 2009

Consensus genetic structuring and typological value of markers using multiple co-inertia analysis

artículo científico publicado en 2007

Deciphering the complex: methodological overview of statistical models to derive OMICS-based biomarkers

artículo científico

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations ⬇️

artículo científico publicado el 15 de octubre de 2010

Ebola Virus Disease among Male and Female Persons in West Africa

artículo científico publicado en 2016

Ebola virus disease among children in West Africa

artículo científico publicado en 2015

Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections

artículo científico publicado en 2014

Epidemic curves made easy using the R package

artículo científico publicado en 2019

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

artículo científico publicado en 2015

Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia

artículo científico publicado en 2016

Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study

artículo científico publicado en 2016

Finding essential scales of spatial variation in ecological data: a multivariate approach

artículo científico publicado en 2009

Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting

artículo científico publicado en 2014

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

artículo científico publicado en 2015

Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013–2016

artículo científico publicado en 2017

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

artículo científico publicado en 2012

How to measure and test phylogenetic signal

scholarly article by Tamara Münkemüller et al published 10 April 2012 in Methods in Ecology and Evolution

Inferring the number of COVID-19 cases from recently reported deaths

artículo científico publicado en 2020

Inferring the number of COVID-19 cases from recently reported deaths

artículo científico publicado en 2020

Key data for outbreak evaluation: building on the Ebola experience

artículo científico publicado en 2017

Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics

artículo científico publicado en 2022

Multiple independent introductions of Plasmodium falciparum in South America

artículo científico publicado en 2012

Outbreak analytics: a developing data science for informing the response to emerging pathogens.

artículo científico publicado en 2019

OutbreakTools: a new platform for disease outbreak analysis using the R software

artículo científico publicado en 2014

Pandemic potential of a strain of influenza A (H1N1): early findings

artículo científico publicado en 2009

Patterns and dynamics of genetic diversity in Plasmodium falciparum: what past human migrations tell us about malaria

artículo científico publicado en 2014

Phylogeography of Toxoplasma gondii points to a South American origin

artículo científico publicado en 2016

Plasmodium falciparum accompanied the human expansion out of Africa.

artículo científico publicado en 2010

Plasmodium falciparum mitochondrial genetic diversity exhibits isolation-by-distance patterns supporting a sub-Saharan African origin.

artículo científico publicado en 2013

Population substructure and signals of divergent adaptive selection despite admixture in the sponge Dendrilla antarctica from shallow waters surrounding the Antarctic Peninsula

artículo científico publicado en 2019

Putting phylogeny into the analysis of biological traits: a methodological approach

artículo científico publicado en 2010

Revisiting Guerry’s data: Introducing spatial constraints in multivariate analysis

Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic

artículo científico publicado en 2009

The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water

artículo científico publicado en 2016

The role of rapid diagnostics in managing Ebola epidemics

artículo científico publicado en 2015

Towards an integrated ecosystem of R packages for the analysis of population genetic data

artículo científico publicado en 2016

Unraveling the drivers of MERS-CoV transmission

artículo científico publicado en 2016

West African Ebola epidemic after one year--slowing but not yet under control

artículo científico publicado en 2014

Within-population genetic diversity of Plasmodium falciparum vaccine candidate antigens reveals geographic distance from a Central sub-Saharan African origin.

artículo científico publicado en 2013

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

artículo científico publicado en 2010

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

artículo científico publicado en 2011

adephylo: new tools for investigating the phylogenetic signal in biological traits

artículo científico publicado en 2010

apex: phylogenetics with multiple genes

artículo científico publicado en 2016

epicontacts: Handling, visualisation and analysis of epidemiological contacts

scientific article published on 10 May 2018

epiflows: an R package for risk assessment of travel-related spread of disease

artículo científico publicado en 2018

mvMapper: interactive spatial mapping of genetic structures.

artículo científico publicado en 2017

outbreaker2: a modular platform for outbreak reconstruction

scholarly article by Finlay Campbell published in October 2018

treespace: Statistical exploration of landscapes of phylogenetic trees

artículo científico publicado en 2017

Lista de obras de

A fast likelihood solution to the genetic clustering problem.

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

A simple approach to measure transmissibility and forecast incidence

A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus

An Aboriginal Australian genome reveals separate human dispersals into Asia

Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation

Consensus genetic structuring and typological value of markers using multiple co-inertia analysis

Deciphering the complex: methodological overview of statistical models to derive OMICS-based biomarkers

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations ⬇️

Ebola Virus Disease among Male and Female Persons in West Africa

Ebola virus disease among children in West Africa

Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections

Epidemic curves made easy using the R package

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia

Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study

Finding essential scales of spatial variation in ecological data: a multivariate approach

Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013–2016

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

How to measure and test phylogenetic signal

Inferring the number of COVID-19 cases from recently reported deaths

Inferring the number of COVID-19 cases from recently reported deaths

Key data for outbreak evaluation: building on the Ebola experience

Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics

Multiple independent introductions of Plasmodium falciparum in South America

Outbreak analytics: a developing data science for informing the response to emerging pathogens.

OutbreakTools: a new platform for disease outbreak analysis using the R software

Pandemic potential of a strain of influenza A (H1N1): early findings

Patterns and dynamics of genetic diversity in Plasmodium falciparum: what past human migrations tell us about malaria

Phylogeography of Toxoplasma gondii points to a South American origin

Plasmodium falciparum accompanied the human expansion out of Africa.

Plasmodium falciparum mitochondrial genetic diversity exhibits isolation-by-distance patterns supporting a sub-Saharan African origin.

Population substructure and signals of divergent adaptive selection despite admixture in the sponge Dendrilla antarctica from shallow waters surrounding the Antarctic Peninsula

Putting phylogeny into the analysis of biological traits: a methodological approach

Revisiting Guerry’s data: Introducing spatial constraints in multivariate analysis

Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic

The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water

The role of rapid diagnostics in managing Ebola epidemics

Towards an integrated ecosystem of R packages for the analysis of population genetic data

Unraveling the drivers of MERS-CoV transmission

West African Ebola epidemic after one year--slowing but not yet under control

Within-population genetic diversity of Plasmodium falciparum vaccine candidate antigens reveals geographic distance from a Central sub-Saharan African origin.

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

adephylo: new tools for investigating the phylogenetic signal in biological traits

apex: phylogenetics with multiple genes

epicontacts: Handling, visualisation and analysis of epidemiological contacts

epiflows: an R package for risk assessment of travel-related spread of disease

epiflows: an R package for risk assessment of travel-related spread of disease

mvMapper: interactive spatial mapping of genetic structures.

outbreaker2: a modular platform for outbreak reconstruction

treespace: Statistical exploration of landscapes of phylogenetic trees