Lista de obras -

A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis

artículo científico publicado en 2022

Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth

artículo científico publicado en 2021

Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease

artículo científico publicado en 2022

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

artículo científico publicado en 2020

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells

artículo científico publicado en 2020

Big data in IBD: big progress for clinical practice

artículo científico publicado en 2020

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

artículo científico

Cancer-related networks: A help to understand, predict and change malignant transformation ⬇️

artículo científico publicado el 2 de julio de 2013

CausalTab: PSI-MITAB 2.8 updated format for signaling data representation and dissemination

artículo científico publicado en 2018

ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis.

artículo científico publicado en 2014

Confrontation of fibroblasts with cancer cells in vitro: gene network analysis of transcriptome changes and differential capacity to inhibit tumor growth

artículo científico

Democratising Knowledge Representation with BioCypher

artículo científico publicado en 2022

Democratizing knowledge representation with BioCypher

Developmentally regulated autophagy is required for eye formation in Drosophila

artículo científico publicado en 2018

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses.

artículo científico publicado en 2017

Evolution of regulatory networks associated with traits under selection in cichlids

artículo científico publicado en 2021

From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes

artículo científico publicado en 2020

Identification of critical paralog groups with indispensable roles in the regulation of signaling flow

artículo científico publicado en 2016

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

artículo científico

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

scientific article published on 18 March 2019

LC3-Associated Phagocytosis Is Required for Dendritic Cell Inflammatory Cytokine Response to Gut Commensal Yeast Saccharomyces cerevisiae.

artículo científico publicado en 2017

MDH1 and MPP7 Regulate Autophagy in Pancreatic Ductal Adenocarcinoma

artículo científico publicado en 2019

Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways

artículo científico publicado en 2022

Mechanisms and pathways of Toxoplasma gondii transepithelial migration

scientific article published on 20 December 2016

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions

scientific article published on 21 May 2020

MicrobioLink: An integrated computational pipeline to infer functional effects of microbiome-host interactions

artículo científico publicado en 2019

Network Biology Approaches to Identify Molecular and Systems-Level Differences Between Salmonella Pathovars

artículo científico publicado en 2019

Next generation of network medicine: interdisciplinary signaling approaches

artículo científico publicado en 2017

Omics Approaches to Identify Potential Biomarkers of Inflammatory Diseases in the Focal Adhesion Complex

artículo científico publicado en 2017

Organoid-based models to study the role of host-microbiota interactions in IBD

scientific article published on 20 December 2020

SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients

scholarly article by Marton Olbei et al published 2021 in Frontiers in Immunology

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

artículo científico publicado en 2017

Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology

scientific article published on 21 May 2021

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

artículo científico publicado en 2022

Signalogs: Orthology-Based Identification of Novel Signaling Pathway Components in Three Metazoans ⬇️

artículo científico publicado el 3 de mayo de 2011

Staurosporine induces necroptotic cell death under caspase-compromised conditions in U937 cells

artículo científico publicado en 2012

Suppression of AMPK/aak-2 by NRF2/SKN-1 down-regulates autophagy during prolonged oxidative stress

artículo científico publicado en 2018

Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response

artículo científico publicado en 2018

Targeted interplay between bacterial pathogens and host autophagy

artículo científico publicado en 2019

Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning

artículo científico publicado en 2013

ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins

artículo científico publicado en 2020

Uniform Curation Protocol of Metazoan Signaling Pathways to Predict Novel Signaling Components ⬇️

artículo científico publicado el 1 de enero de 2013

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

artículo científico publicado en 2021

What We Learned From Big Data for Autophagy Research

artículo científico publicado en 2018

Guía para el uso y la interpretación de ensayos para el seguimiento de la autofagia (4ª edición)

artículo científico

Lista de obras de

A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis

Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth

Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells

Big data in IBD: big progress for clinical practice

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

Cancer-related networks: A help to understand, predict and change malignant transformation ⬇️

CausalTab: PSI-MITAB 2.8 updated format for signaling data representation and dissemination

ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis.

Confrontation of fibroblasts with cancer cells in vitro: gene network analysis of transcriptome changes and differential capacity to inhibit tumor growth

Democratising Knowledge Representation with BioCypher

Democratizing knowledge representation with BioCypher

Developmentally regulated autophagy is required for eye formation in Drosophila

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses.

Evolution of regulatory networks associated with traits under selection in cichlids

From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes

Identification of critical paralog groups with indispensable roles in the regulation of signaling flow

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy

LC3-Associated Phagocytosis Is Required for Dendritic Cell Inflammatory Cytokine Response to Gut Commensal Yeast Saccharomyces cerevisiae.

MDH1 and MPP7 Regulate Autophagy in Pancreatic Ductal Adenocarcinoma

Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways

Mechanisms and pathways of Toxoplasma gondii transepithelial migration

MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions

MicrobioLink: An integrated computational pipeline to infer functional effects of microbiome-host interactions

Network Biology Approaches to Identify Molecular and Systems-Level Differences Between Salmonella Pathovars

Next generation of network medicine: interdisciplinary signaling approaches

Omics Approaches to Identify Potential Biomarkers of Inflammatory Diseases in the Focal Adhesion Complex

Organoid-based models to study the role of host-microbiota interactions in IBD

SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients

SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation

Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

Signalogs: Orthology-Based Identification of Novel Signaling Pathway Components in Three Metazoans ⬇️

Staurosporine induces necroptotic cell death under caspase-compromised conditions in U937 cells

Suppression of AMPK/aak-2 by NRF2/SKN-1 down-regulates autophagy during prolonged oxidative stress

Systems-Level Feedbacks of NRF2 Controlling Autophagy upon Oxidative Stress Response

Targeted interplay between bacterial pathogens and host autophagy

Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning

ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins

Uniform Curation Protocol of Metazoan Signaling Pathways to Predict Novel Signaling Components ⬇️

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways

What We Learned From Big Data for Autophagy Research

Guía para el uso y la interpretación de ensayos para el seguimiento de la autofagia (4ª edición)