Lista de obras -

A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva

artículo científico publicado en 2009

A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics.

artículo científico publicado en 2014

A functional screen provides evidence for a conserved, regulatory, juxtamembrane phosphorylation site in guanylyl cyclase a and B.

artículo científico publicado en 2012

A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry.

artículo científico publicado en 2010

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

artículo científico publicado en 2013

AminoxyTMT: A novel multi-functional reagent for characterization of protein carbonylation.

artículo científico publicado en 2016

An Accessible Proteogenomics Informatics Resource for Cancer Researchers

artículo científico publicado en 2017

An Approach to Predicting the Stabilities of Peptide Nucleic Acid:DNA Duplexes ⬇️

artículo científico publicado el 15 de junio de 1998

BAL Fluid Metaproteome in Acute Respiratory Failure

artículo científico publicado en 2018

Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics

artículo científico publicado en 2018

Calcium-binding protein S100A4 confers mesenchymal progenitor cell fibrogenicity in idiopathic pulmonary fibrosis

artículo científico publicado en 2017

Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits

scientific article published on 20 December 2019

Characterizing Cardiac Molecular Mechanisms of Mammalian Hibernation via Quantitative Proteogenomics.

artículo científico publicado en 2015

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

artículo científico publicado en 2021

Deep metaproteomic analysis of human salivary supernatant.

artículo científico publicado en 2012

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

artículo científico publicado en 2018

Distinct Cancer-Promoting Stromal Gene Expression Depending on Lung Function

artículo científico publicado en 2019

Dynamic range compression: a solution for proteomic biomarker discovery?

artículo científico publicado en 2011

Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome

artículo científico publicado en 2018

Fibroblast Growth Factor Receptor 1 Activation in Mammary Tumor Cells Promotes Macrophage Recruitment in a CX3CL1-Dependent Manner ⬇️

artículo científico publicado el 24 de septiembre de 2012

Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework

artículo científico publicado en 2014

Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry ⬇️

artículo científico publicado el 1 de diciembre de 1997

Global assessment of protein turnover in recombinant antibody producing myeloma cells.

artículo científico publicado en 2010

Improve your Galaxy text life: The Query Tabular Tool

artículo científico publicado en 2018

Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN).

artículo científico publicado en 2014

Increased Indoleamine-2,3-Dioxygenase Activity Is Associated With Poor Clinical Outcome in Adults Hospitalized With Influenza in the INSIGHT FLU003Plus Study

Mass Spectrometric Identification of Phosphorylation Sites in Guanylyl Cyclase A and B ⬇️

artículo científico publicado el 8 de noviembre de 2010

Metaproteomic analysis using the Galaxy framework.

artículo científico publicado en 2015

Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms

artículo científico publicado en 2021

Microbiomes - embracing complexity

artículo científico publicado en 2015

Multi-omic data analysis using Galaxy.

artículo científico publicado en 2015

Multi-omic molecular profiling of lung cancer in COPD

artículo científico publicado en 2018

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

artículo científico publicado en 2020

Normalization of mass spectrometry data (NOMAD).

artículo científico publicado en 2017

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential ⬇️

artículo científico publicado el 25 de julio de 2010

Perspectives on automated composition of workflows in the life sciences

artículo científico publicado en 2021

Plasma sphingolipids in HIV-associated chronic obstructive pulmonary disease

artículo científico publicado en 2017

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform

artículo científico publicado en 2020

Protein carbonylation and adipocyte mitochondrial function.

artículo científico publicado en 2012

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

artículo científico publicado en 2015

Proteogenomic Analysis of a Hibernating Mammal Indicates Contribution of Skeletal Muscle Physiology to the Hibernation Phenotype

artículo científico publicado en 2016

QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics

artículo científico publicado en 2019

Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker.

artículo científico publicado en 2014

Quantitative proteomics of forebrain subcellular fractions in fragile X mental retardation 1 knockout mice following acute treatment with 2-Methyl-6-(phenylethynyl)pyridine: Relevance to developmental study of schizophrenia

artículo científico publicado en 2018

RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification

artículo científico publicado en 2016

Salivary proteomics of healthy dogs: An in depth catalog

artículo científico publicado en 2018

Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery.

artículo científico publicado en 2011

Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression

artículo científico publicado en 2016

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

artículo científico publicado en 2020

The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis

scientific article published on 01 January 2019

Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures

artículo científico publicado en 2011

Tryptophan catabolism in acute exacerbations of chronic obstructive pulmonary disease.

artículo científico publicado en 2016

ULK1 phosphorylates Ser30 of BECN1 in association with ATG14 to stimulate autophagy induction.

artículo científico publicado en 2018

Update on the moFF Algorithm for Label-Free Quantitative Proteomics

scientific article published on 14 December 2018

Updates on metaQuantome Software for Quantitative Metaproteomics

artículo científico publicado en 2021

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

artículo científico publicado en 2014

Using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry to detect monoclonal immunoglobulin light chains in serum and urine

artículo científico publicado en 2015

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.

artículo científico publicado en 2012

mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation

artículo científico publicado en 2015

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes

scientific article published on 24 June 2019

Lista de obras de

A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva

A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics.

A functional screen provides evidence for a conserved, regulatory, juxtamembrane phosphorylation site in guanylyl cyclase a and B.

A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry.

A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

AminoxyTMT: A novel multi-functional reagent for characterization of protein carbonylation.

An Accessible Proteogenomics Informatics Resource for Cancer Researchers

An Approach to Predicting the Stabilities of Peptide Nucleic Acid:DNA Duplexes ⬇️

BAL Fluid Metaproteome in Acute Respiratory Failure

Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics

Calcium-binding protein S100A4 confers mesenchymal progenitor cell fibrogenicity in idiopathic pulmonary fibrosis

Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits

Characterizing Cardiac Molecular Mechanisms of Mammalian Hibernation via Quantitative Proteogenomics.

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Deep metaproteomic analysis of human salivary supernatant.

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

Distinct Cancer-Promoting Stromal Gene Expression Depending on Lung Function

Dynamic range compression: a solution for proteomic biomarker discovery?

Evaluating the potential of residual Pap test fluid as a resource for the metaproteomic analysis of the cervical-vaginal microbiome

Fibroblast Growth Factor Receptor 1 Activation in Mammary Tumor Cells Promotes Macrophage Recruitment in a CX3CL1-Dependent Manner ⬇️

Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework

Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry ⬇️

Global assessment of protein turnover in recombinant antibody producing myeloma cells.

Improve your Galaxy text life: The Query Tabular Tool

Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN).

Increased Indoleamine-2,3-Dioxygenase Activity Is Associated With Poor Clinical Outcome in Adults Hospitalized With Influenza in the INSIGHT FLU003Plus Study

Mass Spectrometric Identification of Phosphorylation Sites in Guanylyl Cyclase A and B ⬇️

Metaproteomic analysis using the Galaxy framework.

Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms

Microbiomes - embracing complexity

Multi-omic data analysis using Galaxy.

Multi-omic molecular profiling of lung cancer in COPD

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration

Normalization of mass spectrometry data (NOMAD).

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential ⬇️

Perspectives on automated composition of workflows in the life sciences

Plasma sphingolipids in HIV-associated chronic obstructive pulmonary disease

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform

Protein carbonylation and adipocyte mitochondrial function.

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries

Proteogenomic Analysis of a Hibernating Mammal Indicates Contribution of Skeletal Muscle Physiology to the Hibernation Phenotype

QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics

Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker.

Quantitative proteomics of forebrain subcellular fractions in fragile X mental retardation 1 knockout mice following acute treatment with 2-Methyl-6-(phenylethynyl)pyridine: Relevance to developmental study of schizophrenia

RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification

Salivary proteomics of healthy dogs: An in depth catalog

Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery.

Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

The Galaxy Platform for Reproducible Affinity Proteomic Mass Spectrometry Data Analysis

Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures

Tryptophan catabolism in acute exacerbations of chronic obstructive pulmonary disease.

ULK1 phosphorylates Ser30 of BECN1 in association with ATG14 to stimulate autophagy induction.

Update on the moFF Algorithm for Label-Free Quantitative Proteomics

Updates on metaQuantome Software for Quantitative Metaproteomics

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry to detect monoclonal immunoglobulin light chains in serum and urine

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.

mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation

metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes