Lista de obras -

A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology

artículo científico publicado en 2018

A systematic approach for the genetic dissection of protein complexes in living cells

artículo científico publicado en 2013

A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality

artículo científico publicado en 2018

A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells.

artículo científico publicado en 2010

An in vivo map of the yeast protein interactome

artículo científico publicado en 2008

Are long‐lived trees poised for evolutionary change? Single locus effects in the evolution of gene expression networks in spruce ⬇️

artículo científico publicado el 7 de enero de 2013

Asymmetrical dose responses shape the evolutionary trade-off between antifungal resistance and nutrient use

artículo científico publicado en 2022

Author Correction: Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

artículo científico publicado en 2019

BUBR1 Pseudokinase Domain Promotes Kinetochore PP2A-B56 Recruitment, Spindle Checkpoint Silencing, and Chromosome Alignment

scientific article published on 01 November 2020

Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery

artículo científico publicado en 2022

Chromosomal variation segregates within incipient species and correlates with reproductive isolation

artículo científico publicado en 2014

Combining the Dihydrofolate Reductase Protein-Fragment Complementation Assay with Gene Deletions to Establish Genotype-to-Phenotype Maps of Protein Complexes and Interaction Networks

artículo científico publicado en 2016

Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (Salmo salar) ⬇️

artículo científico publicado el 1 de octubre de 2001

Compensatory mutations potentiate constructive neutral evolution by gene duplication

Competition experiments in a soil microcosm reveal the impact of genetic and biotic factors on natural yeast populations

artículo científico publicado en 2020

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

artículo científico publicado en 2016

Compositional Differences between Size Classes of Dissolved Organic Matter from Freshwater and Seawater Revealed by an HPLC-FTIR System ⬇️

artículo científico publicado el 27 de enero de 2012

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.

artículo científico publicado en 2017

Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences

artículo científico publicado en 2014

Differences Between the Raw Material and the Products of de Novo Gene Birth Can Result from Mutational Biases

scientific article published on 21 June 2019

Direct Phosphorylation of SRC Homology 3 Domains by Tyrosine Kinase Receptors Disassembles Ligand-Induced Signaling Networks

artículo científico publicado en 2018

Dissection of expression-quantitative trait locus and allele specificity using a haploid/diploid plant system - insights into compensatory evolution of transcriptional regulation within populations.

artículo científico publicado en 2016

Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast

artículo científico publicado en 2018

Evidence for the robustness of protein complexes to inter-species hybridization

artículo científico publicado en 2012

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.

artículo científico publicado en 2016

Evolutionary biology through the lens of budding yeast comparative genomics

artículo científico publicado en 2017

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds

artículo científico publicado en 2015

Exploring the northern limit of the distribution of Saccharomyces cerevisiae and Saccharomyces paradoxus in North America

artículo científico publicado en 2013

Extended linkers improve the detection of PPIs by DHFR PCA in living cells

artículo científico publicado en 2017

Extended linkers improve the detection of protein-protein interactions (PPIs) by dihydrofolate reductase protein-fragment complementation assay (DHFR PCA) in living cells

artículo científico publicado en 2018

Feedback regulation between autophagy and PKA

scientific journal article

Found in translation: functions and evolution of a recently discovered alternative proteome.

artículo científico

Frequent assembly of chimeric complexes in the protein interaction network of an interspecies yeast hybrid

artículo científico publicado en 2020

Functional divergence and evolutionary turnover in mammalian phosphoproteomes

artículo científico publicado en 2014

Gene duplication can impart fragility, not robustness, in the yeast protein interaction network.

artículo científico publicado en 2017

Genome-wide protein-protein interaction screening by protein-fragment complementation assay (PCA) in living cells

artículo científico publicado en 2015

Haploid transcriptome analysis reveals allelelic gene expression variants, co-expressed gene groups, and linkages between expression and copy number variation

artículo científico publicado en 2011

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

artículo científico publicado en 2017

Hybridization and introgression drive genome evolution of Dutch elm disease pathogens

artículo científico publicado en 2020

Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

artículo científico publicado en 2019

Identification of the fitness determinants of budding yeast on a natural substrate

artículo científico publicado en 2016

Integrative avenues for exploring the dynamics and evolution of protein interaction networks

artículo científico

Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark in the Canadian province of Québec

artículo científico publicado en 2015

Local climatic adaptation in a widespread microorganism.

artículo científico publicado en 2014

Metabolic variation in natural populations of wild yeast

artículo científico publicado en 2015

Mitochondrial Recombination Reveals Mito-Mito Epistasis in Yeast.

artículo científico publicado en 2018

Mitochondrial Recombination and Introgression during Speciation by Hybridization.

artículo científico publicado en 2017

Modulation of the yeast protein interactome in response to DNA damage

artículo científico publicado en 2013

Molecular Dependency Impacts on the Compensating Ability of Paralogs: A Response to Veitia

artículo científico publicado en 2017

Molecular and cellular bases of adaptation to a changing environment in microorganisms

artículo científico publicado en 2016

Molecular characterization of the evolution of phagosomes

artículo científico publicado en 2010

Molecular mechanisms of paralogous compensation and the robustness of cellular networks

artículo científico

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

artículo científico publicado en 2010

Multi-scale perturbations of protein interactomes reveal their mechanisms of regulation, robustness and insights into genotype-phenotype maps.

artículo científico

No evidence for extrinsic post-zygotic isolation in a wild Saccharomyces yeast system.

artículo científico publicado en 2017

Paralog dependency indirectly affects the robustness of human cells

scientific article published on 01 September 2019

Perturbing proteomes at single residue resolution using base editing

artículo científico publicado en 2020

Phosphorylation network rewiring by gene duplication

artículo científico publicado en 2011

Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland

artículo científico publicado en 2016

Protein context shapes the specificity of SH3 domain-mediated interactions in vivo

artículo científico publicado en 2021

Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells.

artículo científico publicado en 2016

Protein-fragment complementation assays for large-scale analysis, functional dissection and dynamic studies of protein-protein interactions in living cells

artículo científico publicado en 2011

Regulation plays a multifaceted role in the retention of gene duplicates

scientific article published on 22 November 2019

Similarities in biological processes can be used to bridge ecology and molecular biology

artículo científico publicado en 2020

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

artículo científico publicado en 2016

Spontaneous whole-genome duplication restores fertility in interspecific hybrids

artículo científico publicado en 2019

Systematic identification of signal integration by protein kinase A.

artículo científico publicado en 2015

The Genome Sequence of the Jean-Talon Strain, an Archeological Beer Yeast from Québec, Reveals Traces of Adaptation to Specific Brewing Conditions

scientific article published on 30 June 2020

The effect of hybridization on transposable element accumulation in an undomesticated fungal species

artículo científico publicado en 2020

The genomics of wild yeast populations sheds light on the domestication of man's best (micro) friend.

artículo científico publicado en 2015

The neutral rate of whole-genome duplication varies among yeast species and their hybrids

artículo científico publicado en 2021

The rapid evolution of an ohnolog contributes to the ecological specialization of incipient yeast species.

artículo científico publicado en 2017

The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs

scientific article published on 27 August 2019

Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication

artículo científico publicado en 2012

Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

artículo científico publicado en 2019

When nuclear-encoded proteins and mitochondrial RNAs do not get along, species split apart.

artículo científico publicado en 2016

Where do phosphosites come from and where do they go after gene duplication?

artículo científico publicado en 2012

[Wine yeast as a model for the study of human genes and diseases and their personalized effects]

artículo científico publicado en 2016

beditor: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing

artículo científico publicado en 2019

qPCA: a scalable assay to measure the perturbation of protein-protein interactions in living cells.

artículo científico publicado en 2012

Lista de obras de

A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology

A systematic approach for the genetic dissection of protein complexes in living cells

A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality

A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells.

An in vivo map of the yeast protein interactome

Are long‐lived trees poised for evolutionary change? Single locus effects in the evolution of gene expression networks in spruce ⬇️

Asymmetrical dose responses shape the evolutionary trade-off between antifungal resistance and nutrient use

Author Correction: Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

BUBR1 Pseudokinase Domain Promotes Kinetochore PP2A-B56 Recruitment, Spindle Checkpoint Silencing, and Chromosome Alignment

Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery

Chromosomal variation segregates within incipient species and correlates with reproductive isolation

Combining the Dihydrofolate Reductase Protein-Fragment Complementation Assay with Gene Deletions to Establish Genotype-to-Phenotype Maps of Protein Complexes and Interaction Networks

Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (Salmo salar) ⬇️

Compensatory mutations potentiate constructive neutral evolution by gene duplication

Competition experiments in a soil microcosm reveal the impact of genetic and biotic factors on natural yeast populations

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

Compositional Differences between Size Classes of Dissolved Organic Matter from Freshwater and Seawater Revealed by an HPLC-FTIR System ⬇️

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.

Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences

Differences Between the Raw Material and the Products of de Novo Gene Birth Can Result from Mutational Biases

Direct Phosphorylation of SRC Homology 3 Domains by Tyrosine Kinase Receptors Disassembles Ligand-Induced Signaling Networks

Dissection of expression-quantitative trait locus and allele specificity using a haploid/diploid plant system - insights into compensatory evolution of transcriptional regulation within populations.

Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast

Evidence for the robustness of protein complexes to inter-species hybridization

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.

Evolutionary biology through the lens of budding yeast comparative genomics

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds

Exploring the northern limit of the distribution of Saccharomyces cerevisiae and Saccharomyces paradoxus in North America

Extended linkers improve the detection of PPIs by DHFR PCA in living cells

Extended linkers improve the detection of protein-protein interactions (PPIs) by dihydrofolate reductase protein-fragment complementation assay (DHFR PCA) in living cells

Feedback regulation between autophagy and PKA

Found in translation: functions and evolution of a recently discovered alternative proteome.

Frequent assembly of chimeric complexes in the protein interaction network of an interspecies yeast hybrid

Functional divergence and evolutionary turnover in mammalian phosphoproteomes

Gene duplication can impart fragility, not robustness, in the yeast protein interaction network.

Genome-wide protein-protein interaction screening by protein-fragment complementation assay (PCA) in living cells

Haploid transcriptome analysis reveals allelelic gene expression variants, co-expressed gene groups, and linkages between expression and copy number variation

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

Hybridization and introgression drive genome evolution of Dutch elm disease pathogens

Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

Identification of the fitness determinants of budding yeast on a natural substrate

Integrative avenues for exploring the dynamics and evolution of protein interaction networks

Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark in the Canadian province of Québec

Local climatic adaptation in a widespread microorganism.

Metabolic variation in natural populations of wild yeast

Mitochondrial Recombination Reveals Mito-Mito Epistasis in Yeast.

Mitochondrial Recombination and Introgression during Speciation by Hybridization.

Modulation of the yeast protein interactome in response to DNA damage

Molecular Dependency Impacts on the Compensating Ability of Paralogs: A Response to Veitia

Molecular and cellular bases of adaptation to a changing environment in microorganisms

Molecular characterization of the evolution of phagosomes

Molecular mechanisms of paralogous compensation and the robustness of cellular networks

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

Multi-scale perturbations of protein interactomes reveal their mechanisms of regulation, robustness and insights into genotype-phenotype maps.

No evidence for extrinsic post-zygotic isolation in a wild Saccharomyces yeast system.

Paralog dependency indirectly affects the robustness of human cells

Perturbing proteomes at single residue resolution using base editing

Phosphorylation network rewiring by gene duplication

Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland

Protein context shapes the specificity of SH3 domain-mediated interactions in vivo

Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells.

Protein-fragment complementation assays for large-scale analysis, functional dissection and dynamic studies of protein-protein interactions in living cells

Regulation plays a multifaceted role in the retention of gene duplicates

Similarities in biological processes can be used to bridge ecology and molecular biology

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

Spontaneous whole-genome duplication restores fertility in interspecific hybrids

Systematic identification of signal integration by protein kinase A.

The Genome Sequence of the Jean-Talon Strain, an Archeological Beer Yeast from Québec, Reveals Traces of Adaptation to Specific Brewing Conditions

The effect of hybridization on transposable element accumulation in an undomesticated fungal species

The genomics of wild yeast populations sheds light on the domestication of man's best (micro) friend.

The neutral rate of whole-genome duplication varies among yeast species and their hybrids

The rapid evolution of an ohnolog contributes to the ecological specialization of incipient yeast species.

The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs

Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication

Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

When nuclear-encoded proteins and mitochondrial RNAs do not get along, species split apart.

Where do phosphosites come from and where do they go after gene duplication?

[Wine yeast as a model for the study of human genes and diseases and their personalized effects]

beditor: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing