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Lista de obras de Beth Shapiro

863 genomes reveal the origin and domestication of chicken

artículo científico publicado en 2020

A Bayesian phylogenetic method to estimate unknown sequence ages

artículo científico publicado en 2010

A Biodiversity Composition Map of California Derived from Environmental DNA Metabarcoding and Earth Observation

preprint

A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius)

artículo científico publicado en 2010

A detailed life history of a pleistocene steppe bison (Bison priscus) skeleton unearthed in Arctic Alaska

artículo científico publicado en 2020

A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA

artículo científico publicado en 2021

A late Pleistocene steppe bison (Bison priscus) partial carcass from Tsiigehtchic, Northwest Territories, Canada

article

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos

scientific article published on 27 December 2019

A method for positive forensic identification of samples from extremely low-coverage sequence data

artículo científico publicado en 2015

A middle Holocene steppe bison and paleoenvironments from the Versleuce Meadows, Whitehorse, Yukon, Canada

article

A mummified Pleistocene gray wolf pup

artículo científico publicado en 2020

A new genus of horse from Pleistocene North America

artículo científico publicado en 2017

A novel NGS library preparation method to characterize native termini of fragmented DNA

artículo científico publicado en 2020

A paleogenomic perspective on evolution and gene function: new insights from ancient DNA.

artículo científico publicado en 2014

A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears

artículo científico publicado en 2022

A probable prehistoric case of meningococcal disease from San Francisco Bay: Next generation sequencing of Neisseria meningitidis from dental calculus and osteological evidence

scientific article published on 25 May 2018

A review of the dodo and its ecosystem: insights from a vertebrate concentration Lagerstätte in Mauritius

artículo científico publicado en 2015

A revised evolutionary history of armadillos (Dasypus) in North America based on ancient mitochondrial DNA

AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data

artículo científico publicado en 2017

Accommodating the effect of ancient DNA damage on inferences of demographic histories

artículo científico publicado en 2008

Amplification of TruSeq ancient DNA libraries with AccuPrime Pfx: consequences on nucleotide misincorporation and methylation patterns

An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus

artículo científico publicado en 2021

An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infection and Pathogenesis

artículo científico publicado en 2020

An ancestral recombination graph of human, Neanderthal, and Denisovan genomes

artículo científico publicado en 2021

An ancient bison from the mouth of the Rauchua River (Chukotka, Russia)

Analysis of ancient human genomes: using next generation sequencing, 20-fold coverage of the genome of a 4,000-year-old human from Greenland has been obtained

artículo científico publicado en 2010

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui.

artículo científico publicado en 2017

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

artículo científico publicado en 2010

Ancient DNA analysis indicates the first English lions originated from North Africa

artículo científico publicado en 2008

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

artículo científico publicado en 2007

Ancient DNA confirms a local origin of domesticated chenopod in eastern North America

Ancient DNA provides new insights into the evolutionary history of New Zealand's extinct giant eagle

artículo científico publicado en 2005

Ancient DNA supports southern survival of Richardson's collared lemming (Dicrostonyx richardsoni) during the last glacial maximum

artículo científico publicado en 2013

Ancient DNA typing of archaeological pig remains corroborates historical records

scholarly article by James Haile published in January 2010

Ancient DNA-based sex determination of bison hide moccasins indicates Promontory cave occupants selected female hides for footwear

artículo científico publicado en 2022

Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

artículo científico publicado en 2021

Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe

Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe

article published in the Proceedings of the National Academy of Sciences of the United States of America

Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge

scientific article published in 2021

Ancient hyaenas highlight the old problem of estimating evolutionary rates.

artículo científico publicado en 2014

Ancient hybridization and an Irish origin for the modern polar bear matriline

artículo científico publicado en 2011

Ancient hybridization with an unknown population facilitated high altitude adaptation of canids

scientific article published on 08 May 2020

Ancient mitochondrial DNA and the genetic history of Eurasian beaver (Castor fiber) in Europe

artículo científico publicado en 2014

Ancient mitochondrial DNA from hair

artículo científico publicado en 2004

Ancient mitogenomes of Argentine Patagonia (6070-310 YBP) reveal the early contribution of lineages not previously found in South America

article

Ancient papillomavirus-host co-speciation in Felidae

artículo científico publicado en 2007

Ancient plant DNA reveals High Arctic greening during the Last Interglacial

artículo científico publicado en 2021

Author Correction: 863 genomes reveal the origin and domestication of chicken

artículo científico publicado en 2020

Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding

artículo científico publicado en 2019

Bayesian Estimation of Sequence Damage in Ancient DNA

artículo científico publicado en 2007

Bayesian coalescent inference of past population dynamics from molecular sequences

artículo científico publicado en 2005

Bayesian estimation of sequence damage in ancient DNA.

artículo científico publicado en 2007

Bayesian estimation of substitution rates from ancient DNA sequences with low information content

artículo científico publicado en 2011

Beringia as an Ice Age genetic museum

Bermuda 2.0: reflections from Santa Cruz

artículo científico publicado en 2016

Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada

artículo científico publicado en 2016

Brown bear (Ursus arctos) (9880 ± 35 BP) from late-glacial Champlain Sea deposits at Saint-Nicolas, Quebec, Canada, and the dispersal history of brown bears

article

Case study: ancient DNA recovered from pleistocene-age remains of a Florida armadillo

artículo científico publicado en 2012

Case study: recovery of ancient nuclear DNA from toe pads of the extinct passenger pigeon

artículo científico publicado en 2012

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

article

Climate impacts on transocean dispersal and habitat in gray whales from the Pleistocene to 2100.

artículo científico publicado en 2015

Climate-driven ecological stability as a globally shared cause of Late Quaternary megafaunal extinctions: the Plaids and Stripes Hypothesis

artículo científico publicado en 2018

Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"

artículo científico publicado en 2008

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs

artículo científico publicado en 2013

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

artículo científico publicado en 2016

Complex Admixture Preceded and Followed the Extinction of Wisent in the Wild

artículo científico publicado en 2016

Conservation of biodiversity in the genomics era

artículo científico publicado en 2018

Conserving intraspecific variation for nature’s contributions to people

artículo científico publicado en 2021

Correlating Bayesian date estimates with climatic events and domestication using a bovine case study

artículo científico publicado en 2008

Deep-time paleogenomics and the limits of DNA survival

artículo científico publicado en 2023

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic

artículo científico publicado en 2023

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic

artículo científico publicado en 2023

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic

artículo científico publicado en 2023

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic

artículo científico publicado en 2023

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic

artículo científico publicado en 2023

Demographic reconstruction from ancient DNA supports rapid extinction of the great auk

scientific article published on 26 November 2019

Dense sampling of bird diversity increases power of comparative genomics

artículo científico publicado en 2020

Depletion of Hemoglobin Transcripts and Long-Read Sequencing Improves the Transcriptome Annotation of the Polar Bear (Ursus maritimus)

artículo científico publicado en 2019

Detecting hybridization using ancient DNA.

artículo científico publicado en 2016

Dire wolves were the last of an ancient New World canid lineage

artículo científico publicado en 2021

Discovery of lost diversity of paternal horse lineages using ancient DNA.

artículo científico publicado en 2011

Discovery of the skull of Stephanorhinus kirchbergensis (Jäger, 1839) above the Arctic Circle

article published in 2017

Diverse plant and animal genetic records from Holocene and Pleistocene sediments

artículo científico publicado en 2003

Dynamics of Pleistocene population extinctions in Beringian brown bears

artículo científico publicado en 2002

Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

artículo científico publicado en 2019

Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny

scholarly article published 10 September 2018

Early cave art and ancient DNA record the origin of European bison

artículo científico publicado en 2016

Early dispersal of domestic horses into the Great Plains and northern Rockies

artículo científico publicado en 2023

Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA

artículo científico publicado en 2015

Engineered polymerases amplify the potential of ancient DNA.

artículo científico publicado en 2008

Environmental <scp>DNA</scp> reveals invasive crayfish microbial associates and ecosystem‐wide biodiversity before and after eradication

scientific article published in 2023

Environmental genomics of Late Pleistocene black bears and giant short-faced bears

Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo

artículo científico publicado en 2007

Evidence for time dependency of molecular rate estimates

artículo científico publicado en 2007

Evolutionary constraint and innovation across hundreds of placental mammals

artículo científico publicado en 2023

Experimental Investigation of the Dietary Ecology of the Extinct Passenger Pigeon, Ectopistes migratorius

scientific article published in 2018

Flight of the dodo

artículo científico publicado en 2002

Fossil and genomic evidence constrains the timing of bison arrival in North America.

artículo científico publicado en 2017

Genetic relatedness in two-tiered plains zebra societies suggests that females choose to associate with kin

Genetic structure and extinction of the woolly mammoth, Mammuthus primigenius

artículo científico publicado en 2007

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species

artículo científico publicado en 2015

Genomic Data from Extinct North American Camelops Revise Camel Evolutionary History

artículo científico publicado en 2015

Genomic analysis of hepatitis B virus reveals antigen state and genotype as sources of evolutionary rate variation

artículo científico publicado en 2011

Genomic basis for skin phenotype and cold adaptation in the extinct Steller’s sea cow

artículo científico publicado en 2022

Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution

artículo científico publicado en 2013

Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears

artículo científico publicado en 2015

Genomic evidence of widespread admixture from polar bears into brown bears during the last ice age.

artículo científico publicado en 2018

Glacial ice supports a distinct and undocumented polar bear subpopulation persisting in late 21st-century sea-ice conditions

artículo científico publicado en 2022

Grevy's zebra conservation: overcoming threats of isolation, genetic hybridization and demographic instability

Grey wolf genomic history reveals a dual ancestry of dogs

scientific article published on 29 June 2022

Heterogeneous Hunter-Gatherer and Steppe-Related Ancestries in Late Neolithic and Bell Beaker Genomes from Present-Day France

Highly accurate long-read HiFi sequencing data for five complex genomes

artículo científico publicado en 2020

Homotherium serumandCervalcesfrom the Great Lakes Region, USA: geochronology, morphology and ancient DNA

article

Horseshoe-based bayesian nonparametric estimation of effective population size trajectories

artículo científico publicado en 2020

How to Clone a Mammoth

libro de Beth Shapiro

Human evolution: turning back the clock

artículo científico publicado en 2013

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

artículo científico publicado en 2013

Improving societies' harassment policies

artículo científico publicado en 2018

Improving the performance of true single molecule sequencing for ancient DNA

artículo científico publicado en 2012

Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data

artículo científico publicado en 2016

Insights into the Evolutionary History of an Emerging Livestock Pathogen: Porcine Circovirus 2

artículo científico publicado en 2009

Is amino acid racemization a useful tool for screening for ancient DNA in bone?

artículo científico publicado en 2009

Is the endangered Grevy's zebra threatened by hybridization?

Late Pleistocene northward-dispersing Bison antiquus from the Bighill Creek Formation, Gallelli Gravel Pit, Alberta, Canada, and the fate of Bison occidentalis

article

Life and extinction of megafauna in the ice-age Arctic

artículo científico publicado en 2015

Life as We Made It

2021 non-fiction book by Beth Shapiro

Lifetime mobility of an Arctic woolly mammoth

artículo científico publicado en 2021

Mammoth 2.0: will genome engineering resurrect extinct species?

artículo científico publicado en 2015

Mammuthus Population Dynamics in Late Pleistocene North America: Divergence, Phylogeography, and Introgression

artículo científico publicado en 2016

Metabarcoding meiofauna biodiversity assessment in four beaches of Northern Colombia: effects of sampling protocols and primer choice

artículo científico

Mid-Holocene vertebrate bone Concentration-Lagerstätte on oceanic island Mauritius provides a window into the ecosystem of the dodo (Raphus cucullatus)

artículo científico publicado en 2009

Million-year-old DNA sheds light on the genomic history of mammoths

artículo científico publicado en 2021

Minimizing polymerase biases in metabarcoding

artículo científico publicado en 2018

Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs

artículo científico publicado en 2007

Mitochondrial phylogenomics of modern and ancient equids

artículo científico publicado en 2013

Mitogenomes illuminate the origin and migration patterns of the indigenous people of the Canary Islands

scientific article published on 20 March 2019

Mitogenomics of the Extinct Cave Lion, Panthera spelaea (Goldfuss, 1810), Resolve its Position within the Panthera Cats

Modern and ancient DNA reveal recent partial replacement of caribou in the southwest Yukon

artículo científico publicado en 2010

Molecular phylogeny and evolution of the extinct bovid Myotragus balearicus

artículo científico publicado en 2002

Morphological and genetic identification and isotopic study of the hair of a cave lion (Panthera spelaea Goldfuss, 1810) from the Malyi Anyui River (Chukotka, Russia)

scholarly article

Multiple independent origins of a protease inhibitor resistance mutation in salvage therapy patients

artículo científico publicado en 2008

Multiple losses of flight and recent speciation in steamer ducks

artículo científico publicado en 2012

Natural selection shaped the rise and fall of passenger pigeon genomic diversity.

artículo científico publicado en 2017

New middle chapter in the story of human evolution

artículo científico publicado en 2019

No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.).

artículo científico publicado en 2006

Nuclear DNA from the extinct Passenger Pigeon (Ectopistes migratorius) confirms a single origin of New World pigeons

artículo científico publicado en 2011

Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution

artículo científico publicado en 2017

Partial genetic turnover in neandertals: continuity in the East and population replacement in the West

artículo científico publicado en 2012

Pathways to de-extinction: how close can we get to resurrection of an extinct species?

article

Pattern of extinction of the woolly mammoth in Beringia

artículo científico publicado en 2012

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages.

artículo científico publicado en 2012

Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity

artículo científico publicado en 2009

Population-level genotyping of coat colour polymorphism in woolly mammoth (Mammuthus primigenius)

scholarly article

Post-glacial dispersal patterns of Northern pike inferred from an 8800 year old pike (Esox cf. lucius) skull from interior Alaska

scholarly article by Matthew J. Wooller et al published July 2015 in Quaternary Science Reviews

Post-mortem DNA damage hotspots in Bison (Bison bison) provide evidence for both damage and mutational hotspots in human mitochondrial DNA

article

Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

scientific article published on 30 July 2020

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

artículo científico publicado en 2014

Preservation of viral genomes in 700-y-old caribou feces from a subarctic ice patch

artículo científico publicado en 2014

Pros and cons of methylation-based enrichment methods for ancient DNA

artículo científico publicado en 2015

Protocols for sampling viral sequences to study epidemic dynamics

artículo científico publicado en 2010

Puma genomes from North and South America provide insights into the genomic consequences of inbreeding

scientific article published on 18 October 2019

Rapid range shifts and megafaunal extinctions associated with late Pleistocene climate change ⬇️

artículo científico publicado en 2020

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

artículo científico publicado en 2013

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form

artículo científico publicado en 2007

Rejoinder for discussion on "Horseshoe-based Bayesian nonparametric estimation of effective population size trajectories"

scientific article published on 07 May 2020

Relict permafrost preserves megafauna, insects, pollen, soils and pore-ice isotopes of the mammoth steppe and its collapse in central Yukon

artículo científico publicado en 2023

Response to Hohenlohe et al.

artículo científico publicado en 2017

Revealing the maternal demographic history of Panthera leo using ancient DNA and a spatially explicit genealogical analysis

artículo científico publicado en 2014

Rise and fall of the Beringian steppe bison

artículo científico publicado en 2004

Sedimentary DNA and molecular evidence for early human occupation of the Faroe Islands

artículo científico publicado en 2021

Sequence preservation of osteocalcin protein and mitochondrial DNA in bison bones older than 55 ka

artículo científico publicado en 2002

Setting Up an Ancient DNA Laboratory

scientific article published on 01 January 2019

Shotgun microbial profiling of fossil remains

artículo científico publicado en 2014

Skyline-plot methods for estimating demographic history from nucleotide sequences

artículo científico publicado en 2011

Species-specific responses of Late Quaternary megafauna to climate and humans

artículo científico publicado en 2011

Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

artículo científico publicado en 2017

Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics

artículo científico publicado en 2007

Targeted Amplification and Sequencing of Ancient Environmental and Sedimentary DNA

scientific article published on 01 January 2019

Ten strategies for a successful transition to remote learning: Lessons learned with a flipped course

artículo científico publicado en 2020

The California Environmental DNA "CALeDNA" Program

The Late Pleistocene distribution of vicuñas (Vicugna vicugna) and the “extinction” of the gracile llama (“Lama gracilis”): New molecular data

scholarly article

The Zhenya Mammoth ( Mammuthus primigenius (Blum.)): Taphonomy, geology, age, morphology and ancient DNA of a 48,000 year old frozen mummy from western Taimyr, Russia

scholarly article by Evgeny N. Maschenko et al published July 2017 in Quaternary International

The case of an arctic wild ass highlights the utility of ancient DNA for validating problematic identifications in museum collections

artículo científico publicado en 2019

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The earliest evidence for anatomically modern humans in northwestern Europe

artículo científico publicado en 2011

The effect of inappropriate calibration: three case studies in molecular ecology

artículo científico publicado en 2008

The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone

artículo científico publicado en 2016

The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis

artículo científico publicado en 2017

The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography

artículo científico publicado en 2009

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis

artículo científico publicado en 2009

The origin of the 'Mycoplasma mycoides cluster' coincides with domestication of ruminants

artículo científico publicado en 2012

The southern coastal Beringian land bridge: cryptic refugium or pseudorefugium for woody plants during the Last Glacial Maximum?

article

Time-dependent estimates of molecular evolutionary rates: evidence and causes

artículo científico publicado en 2015

Timing and causes of mid-Holocene mammoth extinction on St. Paul Island, Alaska

artículo científico publicado en 2016

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.

artículo científico publicado en 2019

Transoceanic drift and the domestication of African bottle gourds in the Americas.

artículo científico publicado en 2014

True single-molecule DNA sequencing of a pleistocene horse bone

artículo científico publicado en 2011

Using ancient DNA and coalescent-based methods to infer extinction

artículo científico publicado en 2016

Using ancient DNA techniques to identify the origin of unprovenanced museum specimens, as illustrated by the identification of a 19th century lion from Amsterdam

artículo científico publicado en 2007

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

artículo científico publicado en 2010

Whole-genome analyses resolve early branches in the tree of life of modern birds

artículo científico publicado en 2014

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf

artículo científico publicado en 2016

El libro del clima

2022 book by Greta Thunberg

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