Lista de obras - Joao Andre Carrico - Dominio Público Uruguay

A Primer on Microbial Bioinformatics for non-bioinformaticians

artículo científico publicado en 2018

A widespread family of polymorphic toxins encoded by temperate phages.

artículo científico publicado en 2017

Adjusted Wallace coefficient as a measure of congruence between typing methods.

artículo científico publicado en 2011

An Ontology and a REST API for Sequence Based Microbial Typing Data

Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype. ⬇️

artículo científico publicado en 2011

Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.

artículo científico publicado en 2007

Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresis

artículo científico publicado en 2005

Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.

artículo científico publicado en 2015

Bacillus invictae sp. nov., isolated from a health product

artículo científico publicado en 2014

Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network

Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

artículo científico publicado en 2016

Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis

artículo científico publicado en 2011

Building the national health information infrastructure for personal health, health care services, public health, and research

artículo científico publicado en 2003

Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal

artículo científico publicado en 2005

Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting.

artículo científico publicado en 2017

Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012.

artículo científico publicado en 2017

Comparing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Phenotypic and Molecular Methods for Identification of Species within the Streptococcus anginosus Group.

artículo científico publicado en 2015

Comparison of molecular typing methods for characterization of Staphylococcus epidermidis: proposal for clone definition.

artículo científico publicado en 2007

Data integration gets 'Sloppy'

artículo científico publicado en 2006

Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of Staphylococcus epidermidis Clonal Lineages

artículo científico publicado en 2019

Draft Genome Sequence of Escherichia coli DSM 12242, a Highly Efficient Host Strain for the Isolation of Somatic Coliphages

artículo científico publicado en 2019

ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab

scientific article published on 17 March 2018

Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions.

artículo científico publicado en 2015

Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing

artículo científico publicado en 2017

Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures

artículo científico publicado en 2011

Fast phylogenetic inference from typing data.

artículo científico publicado en 2018

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

artículo científico publicado en 2009

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

artículo científico publicado en 2018

Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany

artículo científico publicado en 2020

High rates of transmission of and colonization by Streptococcus pneumoniae and Haemophilus influenzae within a day care center revealed in a longitudinal study

artículo científico publicado en 2007

Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance

artículo científico publicado en 2009

Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

artículo científico publicado en 2006

Increasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015

article

Large-Scale Simulations of Bacterial Populations Over Complex Networks

artículo científico publicado en 2018

Molecular characterization of methicillin-resistant Staphylococcus epidermidis clones: evidence of geographic dissemination

artículo científico publicado en 2002

Natural history of drug-resistant clones of Streptococcus pneumoniae colonizing healthy children in Portugal.

artículo científico publicado en 2005

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

artículo científico publicado en 2015

Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

artículo científico publicado en 2018

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

artículo científico publicado en 2016

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

artículo científico publicado en 2016

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

artículo científico publicado en 2012

Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.

artículo científico publicado en 2014

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

artículo científico publicado en 2019

Properties of novel international drug-resistant pneumococcal clones identified in day-care centers of Lisbon, Portugal.

artículo científico publicado en 2005

Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement

artículo científico publicado en 2007

Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC.

artículo científico publicado en 2014

Serum lipid alterations in GBA-associated Parkinson's disease.

artículo científico publicado en 2017

The use of machine learning methodologies to analyse antibiotic and biocide susceptibility in Staphylococcus aureus.

artículo científico publicado en 2013

Trends in drug resistance, serotypes, and molecular types of Streptococcus pneumoniae colonizing preschool-age children attending day care centers in Lisbon, Portugal: a summary of 4 years of annual surveillance

artículo científico publicado en 2005

TypOn: the microbial typing ontology

artículo científico publicado en 2014

Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks

serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction

artículo científico publicado en 2019

Lista de obras de Joao Andre Carrico

A Primer on Microbial Bioinformatics for non-bioinformaticians

A widespread family of polymorphic toxins encoded by temperate phages.

Adjusted Wallace coefficient as a measure of congruence between typing methods.

An Ontology and a REST API for Sequence Based Microbial Typing Data

Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype. ⬇️

Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.

Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresis

Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.

Bacillus invictae sp. nov., isolated from a health product

Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network

Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis

Building the national health information infrastructure for personal health, health care services, public health, and research

Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal

Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting.

Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012.

Comparing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Phenotypic and Molecular Methods for Identification of Species within the Streptococcus anginosus Group.

Comparison of molecular typing methods for characterization of Staphylococcus epidermidis: proposal for clone definition.

Data integration gets 'Sloppy'

Distinct Phenotypic and Genomic Signatures Underlie Contrasting Pathogenic Potential of Staphylococcus epidermidis Clonal Lineages

Draft Genome Sequence of Escherichia coli DSM 12242, a Highly Efficient Host Strain for the Isolation of Somatic Coliphages

ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab

Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions.

Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing

Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures

Fast phylogenetic inference from typing data.

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany

High rates of transmission of and colonization by Streptococcus pneumoniae and Haemophilus influenzae within a day care center revealed in a longitudinal study

Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance

Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

Increasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015

Large-Scale Simulations of Bacterial Populations Over Complex Networks

Molecular characterization of methicillin-resistant Staphylococcus epidermidis clones: evidence of geographic dissemination

Natural history of drug-resistant clones of Streptococcus pneumoniae colonizing healthy children in Portugal.

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

Properties of novel international drug-resistant pneumococcal clones identified in day-care centers of Lisbon, Portugal.

Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement

Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC.

Serum lipid alterations in GBA-associated Parkinson's disease.

The use of machine learning methodologies to analyse antibiotic and biocide susceptibility in Staphylococcus aureus.

Trends in drug resistance, serotypes, and molecular types of Streptococcus pneumoniae colonizing preschool-age children attending day care centers in Lisbon, Portugal: a summary of 4 years of annual surveillance

TypOn: the microbial typing ontology

Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks

serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction