Lista de obras -

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

artículo científico publicado en 2020

A large effective population size for established within-host influenza virus infection

artículo científico publicado en 2020

A method to infer positive selection from marker dynamics in an asexual population.

artículo científico publicado en 2012

A novel framework for inferring parameters of transmission from viral sequence data

article

Addicted? Reduced host resistance in populations with defensive symbionts

artículo científico publicado en 2016

An entropic safety catch controls Hepatitis C virus entry and antibody resistance

artículo científico publicado en 2022

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis

artículo científico publicado en 2013

Assessing the role of polarization in docking.

artículo científico publicado en 2008

Building a mechanistic mathematical model of hepatitis C virus entry

artículo científico publicado en 2019

Closed loop folding units from structural alignments: experimental foldons revisited.

artículo científico publicado en 2010

Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

artículo científico publicado en 2012

Connectivity and binding-site recognition: applications relevant to drug design.

artículo científico publicado en 2010

Criteria for confirming sequence periodicity identified by Fourier transform analysis: application to GCR2, a candidate plant GPCR?

artículo científico publicado en 2007

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference ⬇️

artículo científico publicado el 6 de septiembre de 2011

EMu: probabilistic inference of mutational processes and their localization in the cancer genome ⬇️

artículo científico publicado el 29 de abril de 2013

Effects of point mutations in pVHL on the binding of HIF-1α.

artículo científico publicado en 2011

Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus

artículo científico publicado en 2015

High-definition reconstruction of clonal composition in cancer

artículo científico publicado en 2014

High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.

artículo científico publicado en 2013

Identifying selection in the within-host evolution of influenza using viral sequence data

artículo científico publicado en 2014

Identifying subset errors in multiple sequence alignments.

artículo científico publicado en 2013

In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterization.

artículo científico publicado en 2015

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model.

artículo científico publicado en 2018

Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.

artículo científico publicado en 2013

Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method

scientific article published on 15 April 2020

Measurements of intrahost viral diversity require an unbiased diversity metric

artículo científico publicado en 2019

Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection

artículo científico publicado en 2019

Quantifying selection acting on a complex trait using allele frequency time series data.

artículo científico publicado en 2011

Quantitative measurement of protease ligand conformation.

artículo científico publicado en 2008

Rapid identification of genes controlling virulence and immunity in malaria parasites.

artículo científico publicado en 2017

SAMFIRE: multi-locus variant calling for time-resolved sequence data

artículo científico publicado en 2016

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

artículo científico publicado en 2018

The effective rate of influenza reassortment is limited during human infection

artículo científico publicado en 2017

The statistical significance of selected sense-antisense peptide interactions.

artículo científico publicado en 2012

Toward a consistent treatment of polarization in model QM/MM calculations.

artículo científico publicado en 2008

Lista de obras de

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

A large effective population size for established within-host influenza virus infection

A method to infer positive selection from marker dynamics in an asexual population.

A novel framework for inferring parameters of transmission from viral sequence data

Addicted? Reduced host resistance in populations with defensive symbionts

An entropic safety catch controls Hepatitis C virus entry and antibody resistance

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis

Assessing the role of polarization in docking.

Building a mechanistic mathematical model of hepatitis C virus entry

Closed loop folding units from structural alignments: experimental foldons revisited.

Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.

Connectivity and binding-site recognition: applications relevant to drug design.

Criteria for confirming sequence periodicity identified by Fourier transform analysis: application to GCR2, a candidate plant GPCR?

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference ⬇️

EMu: probabilistic inference of mutational processes and their localization in the cancer genome ⬇️

Effects of point mutations in pVHL on the binding of HIF-1α.

Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus

High-definition reconstruction of clonal composition in cancer

High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.

Identifying selection in the within-host evolution of influenza using viral sequence data

Identifying subset errors in multiple sequence alignments.

In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterization.

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model.

Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.

Inferring transmission bottleneck size from viral sequence data using a novel haplotype reconstruction method

Measurements of intrahost viral diversity require an unbiased diversity metric

Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection

Quantifying selection acting on a complex trait using allele frequency time series data.

Quantitative measurement of protease ligand conformation.

Rapid identification of genes controlling virulence and immunity in malaria parasites.

SAMFIRE: multi-locus variant calling for time-resolved sequence data

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

The effective rate of influenza reassortment is limited during human infection

The statistical significance of selected sense-antisense peptide interactions.

Toward a consistent treatment of polarization in model QM/MM calculations.