Lista de obras -

A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data

artículo científico publicado en 2018

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry

artículo científico publicado en 2010

A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer

artículo científico publicado en 2014

A penalized likelihood approach for robust estimation of isoform expression

artículo científico publicado en 2015

Accurate and efficient estimation of small p-values with the cross-entropy method: applications in genomic data analysis

scientific article published on 01 July 2019

An integrated software system for analyzing ChIP-chip and ChIP-seq data

artículo científico publicado en 2008

Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression.

artículo científico publicado en 2018

Clinicopathologic characteristics of anterior prostate cancer (APC), including correlation with previous biopsy pathology.

artículo científico publicado en 2015

Combined P53/PTEN deficiency activates expression of mesenchyme homeobox 1 (MEOX1) required for growth of triple-negative breast cancer

artículo científico publicado en 2020

Comparative analysis of circulating tumor DNA stability In K3EDTA, Streck, and CellSave blood collection tubes.

artículo científico publicado en 2016

Comparison of protein expression between human livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics: Focusing on drug-metabolizing enzymes.

artículo científico publicado en 2018

Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling

scientific article published on 16 July 2018

Computational Aspects of Optional Pólya Tree

artículo científico publicado en 2016

Concurrent nuclear ERG and MYC protein overexpression defines a subset of locally advanced prostate cancer: Potential opportunities for synergistic targeted therapeutics

artículo científico publicado en 2016

Correlating bladder cancer risk genes with their targeting microRNAs using MMiRNA-Tar

artículo científico publicado en 2015

Cross-hybridization modeling on Affymetrix exon arrays.

artículo científico publicado en 2008

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

artículo científico publicado en 2010

Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Based Proteomics Method

artículo científico publicado en 2018

Development of Peptidomimetic Inhibitors of the ERG Gene Fusion Product in Prostate Cancer

artículo científico publicado en 2017

Development of Peptidomimetic Inhibitors of the ERG Gene Fusion Product in Prostate Cancer

scientific article published on 01 June 2017

Differential regulation of the c-Myc/Lin28 axis discriminates subclasses of rearranged MLL leukemia

scientific article published on 19 March 2016

Diversity of the vaginal microbiome correlates with preterm birth.

artículo científico publicado en 2013

Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq.

artículo científico publicado en 2013

Expansion of CTCs from early stage lung cancer patients using a microfluidic co-culture model

artículo científico publicado en 2014

Expression of PDL1 (B7-H1) Before and After Neoadjuvant Chemotherapy in Urothelial Carcinoma.

artículo científico publicado en 2015

False Discovery Rate Control in Cancer Biomarker Selection Using Knockoffs

artículo científico publicado en 2019

False discovery control for penalized variable selections with high-dimensional covariates

scientific article published on 15 December 2018

Fast approximation of small p-values in permutation tests by partitioning the permutations

artículo científico publicado en 2017

Frequent discordance between ERG gene rearrangement and ERG protein expression in a rapid autopsy cohort of patients with lethal, metastatic, castration-resistant prostate cancer.

artículo científico publicado en 2014

Human transcriptome array for high-throughput clinical studies.

artículo científico publicado en 2011

Identifiability of isoform deconvolution from junction arrays and RNA-Seq.

artículo científico publicado en 2009

Identification of gene pairs through penalized regression subject to constraints

artículo científico publicado en 2017

Identifying Interaction Clusters for MiRNA and MRNA Pairs in TCGA Network

artículo científico publicado en 2019

Label-free absolute protein quantification with data-independent acquisition

scientific article published on 14 March 2019

Novel cancer stem cell targets during epithelial to mesenchymal transition in PTEN-deficient trastuzumab-resistant breast cancer

scientific article published on 06 June 2016

Performance of lateral flow device and galactomannan for the detection of Aspergillus species in bronchoalveolar fluid of patients at risk for invasive pulmonary aspergillosis.

artículo científico publicado en 2015

Programmed Death-ligand 1 Expression in Upper Tract Urothelial Carcinoma

artículo científico publicado en 2016

RNA-Seq accurately identifies cancer biomarker signatures to distinguish tissue of origin.

artículo científico publicado en 2014

Rationale for Using Irreversible Epidermal Growth Factor Receptor Inhibitors in Combination with Phosphatidylinositol 3-Kinase Inhibitors for Advanced Head and Neck Squamous Cell Carcinoma

artículo científico publicado en 2019

Response to the Comments on "Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Proteomics Method"

artículo científico publicado en 2019

Single Cell Transcriptomics Analysis Identifies Nuclear Protein 1 as a Regulator of Docetaxel Resistance in Prostate Cancer Cells

artículo científico publicado en 2020

Statistical Modeling of RNA-Seq Data.

artículo científico publicado en 2011

Statistical properties of an early stopping rule for resampling-based multiple testing.

artículo científico publicado en 2012

Statistics in the Genomic Era

artículo científico publicado en 2020

Targeted Degradation of BET Proteins in Triple-Negative Breast Cancer.

artículo científico publicado en 2017

Targeting LRP8 inhibits breast cancer stem cells in triple-negative breast cancer

artículo científico publicado en 2018

Testing the performance of a prototype lateral flow device using bronchoalveolar lavage fluid for the diagnosis of invasive pulmonary aspergillosis in high-risk patients.

artículo científico publicado en 2017

The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer.

artículo científico publicado en 2012

The genomic landscape of UM-SCC oral cavity squamous cell carcinoma cell lines

artículo científico publicado en 2018

The in vivo endothelial cell translatome is highly heterogeneous across vascular beds

scientific article published on 11 November 2019

The molecular landscape of the University of Michigan laryngeal squamous cell carcinoma cell line panel

scientific article published on 15 May 2019

Trastuzumab resistance induces EMT to transform HER2(+) PTEN(-) to a triple negative breast cancer that requires unique treatment options

artículo científico publicado en 2015

Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles

artículo científico publicado en 2020

rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test

artículo científico publicado en 2013

rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data

artículo científico publicado en 2015

Lista de obras de

A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry

A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer

A penalized likelihood approach for robust estimation of isoform expression

Accurate and efficient estimation of small p-values with the cross-entropy method: applications in genomic data analysis

An integrated software system for analyzing ChIP-chip and ChIP-seq data

Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression.

Clinicopathologic characteristics of anterior prostate cancer (APC), including correlation with previous biopsy pathology.

Combined P53/PTEN deficiency activates expression of mesenchyme homeobox 1 (MEOX1) required for growth of triple-negative breast cancer

Comparative analysis of circulating tumor DNA stability In K3EDTA, Streck, and CellSave blood collection tubes.

Comparison of protein expression between human livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics: Focusing on drug-metabolizing enzymes.

Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling

Computational Aspects of Optional Pólya Tree

Concurrent nuclear ERG and MYC protein overexpression defines a subset of locally advanced prostate cancer: Potential opportunities for synergistic targeted therapeutics

Correlating bladder cancer risk genes with their targeting microRNAs using MMiRNA-Tar

Cross-hybridization modeling on Affymetrix exon arrays.

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Based Proteomics Method

Development of Peptidomimetic Inhibitors of the ERG Gene Fusion Product in Prostate Cancer

Development of Peptidomimetic Inhibitors of the ERG Gene Fusion Product in Prostate Cancer

Differential regulation of the c-Myc/Lin28 axis discriminates subclasses of rearranged MLL leukemia

Diversity of the vaginal microbiome correlates with preterm birth.

Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq.

Expansion of CTCs from early stage lung cancer patients using a microfluidic co-culture model

Expression of PDL1 (B7-H1) Before and After Neoadjuvant Chemotherapy in Urothelial Carcinoma.

False Discovery Rate Control in Cancer Biomarker Selection Using Knockoffs

False discovery control for penalized variable selections with high-dimensional covariates

Fast approximation of small p-values in permutation tests by partitioning the permutations

Frequent discordance between ERG gene rearrangement and ERG protein expression in a rapid autopsy cohort of patients with lethal, metastatic, castration-resistant prostate cancer.

Human transcriptome array for high-throughput clinical studies.

Identifiability of isoform deconvolution from junction arrays and RNA-Seq.

Identification of gene pairs through penalized regression subject to constraints

Identifying Interaction Clusters for MiRNA and MRNA Pairs in TCGA Network

Label-free absolute protein quantification with data-independent acquisition

Novel cancer stem cell targets during epithelial to mesenchymal transition in PTEN-deficient trastuzumab-resistant breast cancer

Performance of lateral flow device and galactomannan for the detection of Aspergillus species in bronchoalveolar fluid of patients at risk for invasive pulmonary aspergillosis.

Programmed Death-ligand 1 Expression in Upper Tract Urothelial Carcinoma

RNA-Seq accurately identifies cancer biomarker signatures to distinguish tissue of origin.

Rationale for Using Irreversible Epidermal Growth Factor Receptor Inhibitors in Combination with Phosphatidylinositol 3-Kinase Inhibitors for Advanced Head and Neck Squamous Cell Carcinoma

Response to the Comments on "Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Proteomics Method"

Single Cell Transcriptomics Analysis Identifies Nuclear Protein 1 as a Regulator of Docetaxel Resistance in Prostate Cancer Cells

Statistical Modeling of RNA-Seq Data.

Statistical properties of an early stopping rule for resampling-based multiple testing.

Statistics in the Genomic Era

Targeted Degradation of BET Proteins in Triple-Negative Breast Cancer.

Targeting LRP8 inhibits breast cancer stem cells in triple-negative breast cancer

Testing the performance of a prototype lateral flow device using bronchoalveolar lavage fluid for the diagnosis of invasive pulmonary aspergillosis in high-risk patients.

The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer.

The genomic landscape of UM-SCC oral cavity squamous cell carcinoma cell lines

The in vivo endothelial cell translatome is highly heterogeneous across vascular beds

The molecular landscape of the University of Michigan laryngeal squamous cell carcinoma cell line panel

Trastuzumab resistance induces EMT to transform HER2(+) PTEN(-) to a triple negative breast cancer that requires unique treatment options

Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles

rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test

rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data