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Lista de obras de Søren Brunak

A Brief History of Protein Sorting Prediction

artículo científico publicado en 2019

A DNA structural atlas for Escherichia coli

artículo científico publicado en 2000

A Large-Cohort, Longitudinal Study Determines Precancer Disease Routes across Different Cancer Types

artículo científico publicado en 2018

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

article published in 1997

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

artículo científico publicado en 2013

A Novel Approach to Prediction of the 3-Dimensional Structures of Protein Backbones by Neural Networks ⬇️

scholarly article by Henrik Fredholm et al published 1991 in Advances in Neural Information Processing Systems 3

A Novel Familial Cardiac Arrhythmia Syndrome with Widespread ST-Segment Depression

artículo científico publicado en 2018

A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites

artículo científico publicado en 1997

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

artículo científico publicado en 2018

A computational approach to chemical etiologies of diabetes

artículo científico publicado en 2013

A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links

A generic deep convolutional neural network framework for prediction of receptor-ligand interactions-NetPhosPan: application to kinase phosphorylation prediction

artículo científico publicado en 2019

A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation

artículo científico publicado en 2011

A genome-wide meta-analysis identifies 50 genetic loci associated with carpal tunnel syndrome

artículo científico publicado en 2022

A genomic history of Aboriginal Australia

artículo científico publicado en 2016

A human gut microbial gene catalogue established by metagenomic sequencing

artículo científico publicado en 2010

A human phenome-interactome network of protein complexes implicated in genetic disorders

artículo científico publicado en 2007

A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes

scholarly article

A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

artículo científico publicado en 1997

A new non-linear normalization method for reducing variability in DNA microarray experiments

artículo científico publicado en 2002

A novel approach to prediction of the 3-dimensional structures of protein backbones by neural networks

artículo científico publicado en 1990

A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death.

artículo científico publicado en 2015

A scored human protein-protein interaction network to catalyze genomic interpretation.

artículo científico publicado en 2016

A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing

artículo científico publicado en 2011

A wiring of the human nucleolus.

artículo científico publicado en 2006

Age-stratified longitudinal study of Alzheimer's and vascular dementia patients

scientific article published on 27 April 2020

Alcoholic liver disease: A registry view on comorbidities and disease prediction

scientific article published on 22 September 2020

Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis

artículo científico publicado en 2008

An Aboriginal Australian genome reveals separate human dispersals into Asia

artículo científico publicado en 2011

An integrated catalog of reference genes in the human gut microbiome

artículo científico publicado en 2014

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

artículo científico publicado en 2005

Analysis and prediction of gene splice sites in four Aspergillus genomes

artículo científico publicado en 2008

Analysis and prediction of leucine-rich nuclear export signals

artículo científico publicado en 2004

Analysis and prediction of mammalian protein glycation

artículo científico publicado en 2006

Analysis and recognition of 5' UTR intron splice sites in human pre-mRNA.

artículo científico publicado en 2004

Analysis of Time-Series Gene Expression Data to Explore Mechanisms of Chemical-Induced Hepatic Steatosis Toxicity

article

Analysis of a gene panel for targeted sequencing of colorectal cancer samples

artículo científico publicado en 2018

Analysis of cell death inducing compounds

article published in 2007

Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal

artículo científico publicado en 1995

Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci

artículo científico publicado en 2016

Analysis of gene expression profiles of microdissected cell populations indicates that testicular carcinoma in situ is an arrested gonocyte

artículo científico publicado en 2009

Analysis of the secondary structure of the human immunodeficiency virus (HIV) proteins p17, gp120, and gp41 by computer modeling based on neural network methods.

artículo científico publicado en 1990

Ancient human genome sequence of an extinct Palaeo-Eskimo

artículo científico publicado en 2010

Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics

artículo científico publicado en 2014

Assessing the accuracy of prediction algorithms for classification: an overview

artículo científico publicado en 2000

Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity?

artículo científico publicado en 2020

Association between chemical pattern in breast milk and congenital cryptorchidism: modelling of complex human exposures.

artículo científico publicado en 2012

Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022

artículo científico publicado en 2019

Bacterial diversity in snow on North Pole ice floes.

artículo científico publicado en 2014

Bacterial natural transformation by highly fragmented and damaged DNA ⬇️

artículo científico publicado en 2013

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.

artículo científico publicado en 2018

Bias of purine stretches in sequenced chromosomes

artículo científico publicado en 2002

Bioinformatics-driven identification and examination of candidate genes for non-alcoholic fatty liver disease ⬇️

artículo científico publicado en 2011

Blood cell gene expression profiling in rheumatoid arthritis. Discriminative genes and effect of rheumatoid factor

artículo científico publicado en 2004

Characterization of prokaryotic and eukaryotic promoters using hidden Markov models

artículo científico publicado en 1996

ChemProt-2.0: visual navigation in a disease chemical biology database

artículo científico publicado en 2012

ChemProt-3.0: a global chemical biology diseases mapping

artículo científico publicado en 2016

ChemProt: a disease chemical biology database

artículo científico publicado en 2011

Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations

artículo científico publicado en 2017

Circular reasoning rather than cyclic expression

artículo científico publicado en 2008

Cleaning the GenBank Arabidopsis thaliana data set.

artículo científico publicado en 1996

Cleaning up gene databases.

artículo científico publicado en 1990

Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networks

artículo científico publicado en 1996

Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation

artículo científico publicado en 2002

Co-evolution of transcriptional and post-translational cell-cycle regulation

artículo científico publicado en 2006

Cofactory: sequence-based prediction of cofactor specificity of Rossmann folds

artículo científico publicado en 2014

Coherent topological phenomena in protein folding ⬇️

artículo científico publicado el 1 de enero de 1997

Combinatorial Drug Screening Identifies Ewing Sarcoma-specific Sensitivities

artículo científico publicado en 2016

Combined Ensemble Docking and Machine Learning in Identification of Therapeutic Agents with Potential Inhibitory Effect on Human CES1

artículo científico publicado en 2019

Combing the Hairball: Improving Visualization of miRNA-Target Interaction Networks

scientific article published on 01 January 2019

Cometin is a novel neurotrophic factor that promotes neurite outgrowth and neuroblast migration in vitro and supports survival of spiral ganglion neurons in vivo

artículo científico publicado en 2011

Comorbidity landscape of the Danish patient population affected by chromosome abnormalities

artículo científico publicado en 2019

Comparison of computational methods for the identification of cell cycle-regulated genes

artículo científico publicado en 2004

Comparison of global gene expression profiles of microdissected human foetal Leydig cells with their normal and hyperplastic adult equivalents

artículo científico publicado en 2017

Comparison of quantitative trait loci methods: Total expression and allelic imbalance method in brain RNA-seq

scientific article published on 17 June 2019

Compass: a hybrid method for clinical and biobank data mining.

artículo científico publicado en 2013

Complete Topological Mapping of a Cellular Protein Interactome Reveals Bow-Tie Motifs as Ubiquitous Connectors of Protein Complexes

scientific article published on 01 June 2020

Complete genes may pass from food to human blood.

artículo científico publicado en 2013

Computational analyses and annotations of theArabidopsisperoxidase gene family

article

Computational applications of DNA structural scales.

artículo científico publicado en 1998

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

artículo científico publicado en 2013

Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men

scientific article published on 14 February 2019

Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response

artículo científico publicado en 2011

Continuum secondary structure captures protein flexibility

artículo científico publicado en 2002

Coronavirus 3CLpro proteinase cleavage sites: possible relevance to SARS virus pathology

artículo científico publicado en 2004

Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

artículo científico publicado en 2017

Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia

Country-specific chemical signatures of persistent environmental compounds in breast milk

artículo científico publicado en 2009

Cross-tissue transcriptome-wide association studies identify susceptibility genes shared between schizophrenia and inflammatory bowel disease

artículo científico publicado en 2022

Cutavirus in Cutaneous Malignant Melanoma

artículo científico publicado en 2017

Cyclebase.org a comprehensive multi-organism online database of cell-cycle experiments

artículo científico publicado en 2007

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results

artículo científico publicado en 2009

DBDS Genomic Cohort, a prospective and comprehensive resource for integrative and temporal analysis of genetic, environmental and lifestyle factors affecting health of blood donors

scientific article published on 09 June 2019

DNA Bendability and Nucleosome Positioning in Transcriptional Regulation

DNA structure in human RNA polymerase II promoters

artículo científico

Deciphering diseases and biological targets for environmental chemicals using toxicogenomics networks

artículo científico publicado en 2010

Defining a similarity threshold for a functional protein sequence pattern: the signal peptide cleavage site

artículo científico publicado en 1996

Definition of supertypes for HLA molecules using clustering of specificity matrices

artículo científico publicado en 2004

Diagnosis trajectories of prior multi-morbidity predict sepsis mortality

artículo científico publicado en 2016

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

artículo científico publicado en 2013

Dietary metabolite profiling brings new insight into the relationship between nutrition and metabolic risk: An IMI DIRECT study

artículo científico publicado en 2020

Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: an overview of the data from the epidemiological studies within the IMI DIRECT Consortium

Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: descriptive characteristics of the epidemiological studies within the IMI DIRECT Consortium

scientific article published on 15 June 2019

Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium

artículo científico publicado en 2014

Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA

artículo científico publicado en 2014

Disease Trajectories for Hidradenitis Suppurativa in the Danish Population

artículo científico publicado en 2020

Disease trajectory browser for exploring temporal, population-wide disease progression patterns in 7.2 million Danish patients

artículo científico publicado en 2020

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

artículo científico publicado en 2015

Displaying the information contents of structural RNA alignments: the structure logos.

artículo científico publicado en 1997

Dissecting spatio-temporal protein networks driving human heart development and related disorders

artículo científico publicado en 2010

Distance distributions in proteins: a six-parameter representation

artículo científico publicado en 1996

Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population

artículo científico publicado en 2014

Early differences in islets from prediabetic NOD mice: combined microarray and proteomic analysis

artículo científico publicado en 2017

Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago

artículo científico publicado en 2015

Effects of active farnesoid X receptor on GLUTag enteroendocrine L cells

scientific article published on 20 July 2020

Enterotypes of the human gut microbiome

artículo científico publicado en 2011

Enterotypes of the human gut microbiome

artículo científico publicado en 2011

Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population

artículo científico publicado en 2014

Erratum: Addendum: Enterotypes of the human gut microbiome

artículo científico publicado en 2014

Estimating heritability and genetic correlations from large health datasets in the absence of genetic data

scientific article published on 03 December 2019

Evolution of Cell Cycle Control: Same Molecular Machines, Different Regulation

artículo científico publicado en 2007

Exploiting the past and the future in protein secondary structure prediction

artículo científico publicado en 1999

Expression profiling of human genetic and protein interaction networks in type 1 diabetes

artículo científico publicado en 2009

Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics

artículo científico publicado en 2013

Familial Atrial Septal Defect and Sudden Cardiac Death: Identification of a Novel NKX2-5 Mutation and a Review of the Literature

artículo científico publicado en 2016

Feature-based prediction of non-classical and leaderless protein secretion

artículo científico publicado en 2004

Finding Cervical Cancer Symptoms in Swedish Clinical Text using a Machine Learning Approach and NegEx

artículo científico publicado en 2015

Flexibility of the genetic code with respect to DNA structure

artículo científico publicado en 2001

Functionality of System Components: Conservation of Protein Function in Protein Feature Space

artículo científico publicado en 2003

G+C-rich tract in 5' end of human introns.

artículo científico publicado en 1992

Generating genome-scale candidate gene lists for pharmacogenomics

artículo científico publicado en 2009

Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development

artículo científico publicado en 2012

Genetic variability in the absorption of dietary sterols affects the risk of coronary artery disease

scientific article published on 01 July 2020

Genome organisation and chromatin structure in Escherichia coli

artículo científico

Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer

artículo científico publicado en 2013

Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients

artículo científico publicado en 2014

Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

artículo científico publicado en 2006

Herpes Simplex Virus Type 1 infection is associated with suicidal behavior and first registered psychiatric diagnosis in a healthy population

artículo científico publicado en 2019

Heterozygous deletion at the RLN1 locus in a family with testicular germ cell cancer identified by integrating copy number variation data with phenome and interactome information

artículo científico publicado en 2011

Hidden Markov Models for Human Genes ⬇️

artículo científico publicado en 1994

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach

scientific article published on 01 September 2019

How Suitable Are Registry Data for Recurrence Risk Calculations? Validation of Diagnoses on 1,593 Families With Congenital Heart Disease

artículo científico publicado en 2016

Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016

artículo científico publicado en 2016

Human gut microbes impact host serum metabolome and insulin sensitivity

artículo científico publicado en 2016

Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and beta-cell apoptosis

artículo científico publicado en 2011

ISMB 2001

artículo científico publicado en 2001

ISMB 2006

artículo científico publicado en 2006

ISMB 2006

artículo científico publicado en 2006

Ibuprofen alters human testicular physiology to produce a state of compensated hypogonadism

artículo científico publicado en 2018

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

artículo científico publicado en 2014

Identification and design of p53-derived HLA-A2-binding peptides with increased CTL immunogenicity.

artículo científico publicado en 2001

Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers

artículo científico publicado en 2016

Identification of T1D susceptibility genes within the MHC region by combining protein interaction networks and SNP genotyping data

artículo científico publicado en 2009

Identification of a new hTERT-derived HLA-A*0201 restricted, naturally processed CTL epitope.

artículo científico publicado en 2007

Identification of biomarkers for glycaemic deterioration in type 2 diabetes

artículo científico publicado en 2023

Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types

scientific article published on 07 August 2019

Identification of odorant-receptor interactions by global mapping of the human odorome

artículo científico publicado en 2014

Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry

artículo científico publicado en 2004

Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines

artículo científico publicado en 2015

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

artículo científico publicado en 1997

Identifying Sepsis Phenotypes

Identifying the druggable interactome of EWS-FLI1 reveals MCL-1 dependent differential sensitivities of Ewing sarcoma cells to apoptosis inducers

Immune Profiling of Human Gut-Associated Lymphoid Tissue Identifies a Role for Isolated Lymphoid Follicles in Priming of Region-Specific Immunity

artículo científico publicado en 2020

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization

artículo científico

ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale

artículo científico

Implementation and comparison of two text mining methods with a standard pharmacovigilance method for signal detection of medication errors

scientific article published on 24 May 2020

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach

artículo científico publicado en 2004

Improved prediction of signal peptides: SignalP 3.0

artículo científico publicado en 2004

Improving data and knowledge management to better integrate health care and research.

artículo científico publicado en 2013

Improving the odds in discriminating "drug-like" from "non drug-like" compounds.

artículo científico publicado en 2000

In Silico Systems Pharmacology to Assess Drug's Therapeutic and Toxic Effects.

artículo científico publicado en 2016

Incorporating symptom data in longitudinal disease trajectories for more detailed patient stratification

artículo científico publicado en 2019

Increase in clinically recorded type 2 diabetes after colectomy

artículo científico publicado en 2018

Individualization of treatments with drugs metabolized by CES1: combining genetics and metabolomics.

artículo científico publicado en 2015

Integration of clinical chemistry, expression, and metabolite data leads to better toxicological class separation

artículo científico publicado en 2008

Integration of known DNA, RNA and protein biomarkers provides prediction of anti-TNF response in rheumatoid arthritis: results from the COMBINE study

scientific article published on 15 August 2016

Integrative analysis for finding genes and networks involved in diabetes and other complex diseases

artículo científico publicado en 2007

Intrauterine exposure to mild analgesics is a risk factor for development of male reproductive disorders in human and rat.

artículo científico publicado en 2010

Investigating the impact of missense mutations in hCES1 by in silico structure-based approaches

artículo científico publicado en 2016

Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing

artículo científico publicado en 2015

KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily

artículo científico publicado en 2016

Kissing loops hide premature termination codons in pre-mRNA of selenoprotein genes and in genes containing programmed ribosomal frameshifts ⬇️

artículo científico publicado el 1 de julio de 1997

Klinefelter syndrome comorbidities linked to increased X chromosome gene dosage and altered protein interactome activity

artículo científico publicado en 2017

Knowledge engineering for health: a new discipline required to bridge the "ICT gap" between research and healthcare

artículo científico

Lapatinib potentiates cytotoxicity of  YM155 in neuroblastoma via inhibition of the ABCB1 efflux transporter

artículo científico publicado en 2017

Large-scale study of Toxoplasma and Cytomegalovirus shows an association between infection and serious psychiatric disorders

scientific article published on 29 January 2019

Legacy data sharing to improve drug safety assessment: the eTOX project

artículo científico publicado en 2017

Leveraging European infrastructures to access 1 million human genomes by 2022

scientific article published on 27 August 2019

Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells

artículo científico publicado en 2014

Linear Motif Atlas for Phosphorylation-Dependent Signaling

artículo científico publicado en 2008

Linjedeling med TEX

artículo científico publicado en 1988

Linjedeling med et neuralt netværk

artículo científico publicado en 1989

Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining

artículo científico publicado en 2019

Lipidomic profiles, lipid trajectories and clinical biomarkers in female elite endurance athletes

scientific article published on 11 February 2020

Locating proteins in the cell using TargetP, SignalP and related tools

artículo científico publicado en 2007

Long-term risk of cardiovascular and cerebrovascular disease after removal of the colonic microbiota by colectomy: a cohort study based on the Danish National Patient Register from 1996 to 2014.

artículo científico publicado en 2015

Machine learning approaches for the prediction of signal peptides and other protein sorting signals

artículo científico publicado en 1999

Many putative endocrine disruptors inhibit prostaglandin synthesis

artículo científico publicado en 2010

Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease

artículo científico publicado en 2017

Matching protein beta-sheet partners by feedforward and recurrent neural networks.

artículo científico publicado en 2000

MatrixPlot: visualizing sequence constraints

artículo científico publicado en 1999

Meta-analysis of heterogeneous data sources for genome-scale identification of risk genes in complex phenotypes

artículo científico publicado en 2011

MetaRanker 2.0: a web server for prioritization of genetic variation data

artículo científico publicado en 2013

Metabolite ratios as potential biomarkers for type 2 diabetes: a DIRECT study.

artículo científico publicado en 2017

Metagenomic species profiling using universal phylogenetic marker genes

artículo científico publicado en 2013

MicroRNAs, Regulatory Networks, and Comorbidities: Decoding Complex Systems.

artículo científico publicado en 2017

Mining electronic health records: towards better research applications and clinical care

artículo científico publicado en 2012

Modeling the adaptive immune system: predictions and simulations

artículo científico publicado en 2007

Modelling the human immune system by combining bioinformatics and systems biology approaches

artículo científico publicado en 2006

Modules, networks and systems medicine for understanding disease and aiding diagnosis.

artículo científico publicado en 2014

Molecular wring resonances in chain molecules

artículo científico publicado en 1997

Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2.

artículo científico publicado en 2008

Multiple alignment using simulated annealing: branch point definition in human mRNA splicing

artículo científico publicado en 1992

NESbase version 1.0: a database of nuclear export signals

artículo científico publicado en 2003

Naturally occurring nucleosome positioning signals in human exons and introns

artículo científico publicado en 1996

Negation scope and spelling variation for text-mining of Danish electronic patient records ⬇️

artículo científico publicado en 2014

NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility.

artículo científico publicado en 1998

Network biology concepts in complex disease comorbidities

artículo científico publicado en 2016

Neural network detects errors in the assignment of mRNA splice sites

artículo científico publicado en 1990

Neural network model of the genetic code is strongly correlated to the GES scale of amino acid transfer free energies.

artículo científico publicado en 1994

Neural network predicts sequence of TP53 gene based on DNA chip

artículo científico publicado en 2002

Neurale netværk : computere med intuition

New weakly expressed cell cycle-regulated genes in yeast.

artículo científico publicado en 2005

Non-classical protein secretion in bacteria ⬇️

artículo científico publicado en 2005

Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios ⬇️

artículo científico publicado en 2015

Nucleotide sequence database policies

artículo científico publicado en 2002

O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins

artículo científico publicado en 1998

O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins

artículo científico publicado en 1997

O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins

artículo científico publicado en 1999

O-GLYCBASE: a revised database of O-glycosylated proteins

artículo científico publicado en 1996

OCT4 and downstream factors are expressed in human somatic urogenital epithelia and in culture of epididymal spheres

artículo científico publicado en 2010

On the total number of genes and their length distribution in complete microbial genomes

artículo científico publicado en 2001

Optimization and immune recognition of multiple novel conserved HLA-A2, human immunodeficiency virus type 1-specific CTL epitopes

artículo científico publicado en 2003

Orphan protein function and its relation to glycosylation.

artículo científico publicado en 2002

Pancreatic Islet Protein Complexes and Their Dysregulation in Type 2 Diabetes

artículo científico publicado en 2017

Pathway and network analysis of more than 2,500 whole cancer genomes

Pathway and network analysis of more than 2500 whole cancer genomes

artículo científico publicado en 2020

Patient stratification and identification of adverse event correlations in the space of 1190 drug related adverse events

artículo científico publicado en 2014

Periodic sequence patterns in human exons

artículo científico publicado el 1 de enero de 1995

Pharos: Collating protein information to shed light on the druggable genome

artículo científico publicado en 2016

Phenome-Wide Analysis of Short- and Long-Run Disease Incidence Following Recurrent Pregnancy Loss Using Data From a 39-Year Period

scientific article published on 17 April 2020

PhosphoBase, a database of phosphorylation sites: release 2.0.

artículo científico publicado en 1999

PhosphoBase: a database of phosphorylation sites

artículo científico publicado en 1998

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer

artículo científico publicado en 2017

Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing

artículo científico publicado en 2005

Polychlorinated dibenzo-p-dioxins, furans, and biphenyls (PCDDs/PCDFs and PCBs) in breast milk and early childhood growth and IGF1

artículo científico publicado en 2014

Population genomics of Bronze Age Eurasia

artículo científico publicado en 2015

Population-wide analysis of differences in disease progression patterns in men and women

artículo científico publicado en 2019

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

artículo científico publicado en 2007

Precision cardiology ⬇️

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

artículo científico publicado en 2013

Precision medicine in complex diseases—Molecular subgrouping for improved prediction and treatment stratification

artículo científico publicado en 2023

Predicting and elucidating the etiology of fatty liver disease: A machine learning modeling and validation study in the IMI DIRECT cohorts

scientific article published on 19 June 2020

Predicting proteasomal cleavage sites: a comparison of available methods

artículo científico publicado en 2003

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

artículo científico publicado en 2000

Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates

artículo científico publicado en 2005

Prediction of Human Protein Function from Post-translational Modifications and Localization Features

artículo científico publicado en 2002

Prediction of N-terminal protein sorting signals

artículo científico publicado en 1997

Prediction of disease causing non-synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.

artículo científico publicado en 2013

Prediction of glycosylation across the human proteome and the correlation to protein function.

artículo científico publicado en 2002

Prediction of human mRNA donor and acceptor sites from the DNA sequence

artículo científico publicado en 1991

Prediction of human protein function according to Gene Ontology categories

artículo científico publicado en 2003

Prediction of lipoprotein signal peptides in Gram-negative bacteria

artículo científico publicado en 2003

Prediction of novel archaeal enzymes from sequence-derived features

artículo científico publicado en 2009

Prediction of pH-dependent aqueous solubility of druglike molecules

artículo científico publicado en 2006

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

artículo científico publicado en 2004

Prediction of proprotein convertase cleavage sites

artículo científico publicado en 2004

Prediction of proteasome cleavage motifs by neural networks

artículo científico publicado en 2002

Prediction of protein secondary structure at 80% accuracy.

artículo científico publicado en 2000

Prediction of the secondary structure of HIV-1 gp120.

artículo científico publicado en 1996

Prediction of twin-arginine signal peptides

artículo científico publicado en 2005

Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites

artículo científico publicado en 2005

Prenatal exposure to paracetamol/acetaminophen and precursor aniline impairs masculinisation of male brain and behaviour

artículo científico publicado en 2017

Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing

artículo científico publicado en 2016

Protective role of the vulture facial and gut microbiomes aid adaptation to scavenging

Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

Protein annotation in the era of personal genomics

artículo científico publicado en 2010

Protein distance constraints predicted by neural networks and probability density functions.

artículo científico publicado en 1997

Protein feature based identification of cell cycle regulated proteins in yeast

artículo científico publicado en 2003

Protein features as determinants of wild-type glycoside hydrolase thermostability

artículo científico publicado en 2017

Protein folding and wring resonances

artículo científico publicado en 1997

Protein interaction-based genome-wide analysis of incident coronary heart disease

artículo científico publicado en 2011

Protein secondary structure and homology by neural networks The α-helices in rhodopsin

artículo científico publicado en 1988

Protein secondary structure: category assignment and predictability

scientific article published on 01 October 2001

Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level

artículo científico publicado en 1996

Protein structures from distance inequalities.

artículo científico publicado en 1993

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

artículo científico publicado en 2010

Quantitative predictions of peptide binding to MHC class I molecules using specificity matrices and anchor-stratified calibrations

artículo científico publicado en 2001

REACH and Environmental Chemicals

RNA secondary structure and sequence conservation in C1 region of human immunodeficiency virus type 1 env gene

artículo científico publicado en 2002

Randomized Phase II Study of Nivolumab With or Without Ipilimumab Combined With Stereotactic Body Radiotherapy for Refractory Metastatic Pancreatic Cancer (CheckPAC)

artículo científico publicado en 2022

Ranking factors involved in diabetes remission after bariatric surgery using machine-learning integrating clinical and genomic biomarkers

artículo científico publicado en 2016

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

artículo científico publicado en 2013

Recognition of environmental and genetic effects on barley phenolic fingerprints by neural networks.

artículo científico publicado en 2001

Relating genomic variation to drug response in childhood acute lymphoblastic leukemia by multiplexed targeted sequencing.

artículo científico publicado en 2010

Relationship between protein structure and geometrical constraints

artículo científico publicado en 1996

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

artículo científico publicado en 2003

Reply to 'Mining electronic health records: an additional perspective'

artículo científico publicado en 2012

Retinoic Acid Signaling in Thymic Epithelial Cells Regulates Thymopoiesis

artículo científico publicado en 2018

Richness of human gut microbiome correlates with metabolic markers

artículo científico publicado en 2013

Roadmap for a precision-medicine initiative in the Nordic region

artículo científico publicado en 2019

SARS CTL vaccine candidates; HLA supertype-, genome-wide scanning and biochemical validation

artículo científico publicado en 2004

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

artículo científico publicado en 2007

Scanning the available Dictyostelium discoideum proteome for O-linked GlcNAc glycosylation sites using neural networks.

artículo científico publicado en 1999

Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration

artículo científico publicado en 2020

Selecting informative data for developing peptide-MHC binding predictors using a query by committee approach.

artículo científico publicado en 2003

Semen quality and waiting time to pregnancy explored using Association Mining

scientific article published on 21 October 2020

Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

artículo científico publicado en 2003

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

scientific article (publication date: 17 December 1999)

Sequence-based feature prediction and annotation of proteins

artículo científico publicado en 2009

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

artículo científico publicado en 2017

Sex differences in text-mined possible adverse drug events associated with drugs for psychosis

scientific article published on 12 February 2020

Sigma A recognition sites in the Bacillus subtilis genome

artículo científico publicado en 2001

SignalP 4.0: discriminating signal peptides from transmembrane regions

artículo científico publicado en 2011

SignalP 5.0 improves signal peptide predictions using deep neural networks

artículo científico publicado en 2019

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

artículo científico publicado en 1996

Statistical analysis of protein kinase specificity determinants

artículo científico publicado en 1998

Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima

artículo científico publicado en 2000

Structural basis for triplet repeat disorders: a computational analysis

artículo científico publicado en 1999

Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands

artículo científico publicado en 2009

Systems genetics analysis identifies calcium-signaling defects as novel cause of congenital heart disease

artículo científico publicado en 2020

TEMPORAL ORDER OF DISEASE PAIRS AFFECTS SUBSEQUENT DISEASE TRAJECTORIES: THE CASE OF DIABETES AND SLEEP APNEA.

artículo científico publicado en 2016

Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients

artículo científico publicado en 2014

Text mining of 15 million full-text scientific articles

article

The Atlas visualization of genomewide information

artículo científico publicado en 2002

The Interplay of Non-coding RNAs and X Chromosome Inactivation in Human Disease

The SH2 domain interaction landscape

artículo científico publicado en 2013

The bio.tools registry of software tools and data resources for the life sciences

article

The biology of eukaryotic promoter prediction--a review

artículo científico publicado en 1999

The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density

artículo científico publicado en 2012

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

artículo científico publicado en 2014

The governance structure for data access in the DIRECT consortium: an innovative medicines initiative (IMI) project

scholarly article by Harriet J A Teare et al published 4 September 2018 in Life sciences, society and policy

The hunt for fatal myocardial infarction biomarkers: predictive circulating microRNAs

artículo científico publicado en 2016

The impact of the protein interactome on the syntenic structure of mammalian genomes

artículo científico publicado en 2017

The implications of alternative splicing in the ENCODE protein complement

artículo científico publicado en 2007

The protein kinase SIK downregulates the polarity protein Par3.

artículo científico publicado en 2017

The role of physical activity in metabolic homeostasis before and after the onset of type 2 diabetes: an IMI DIRECT study

artículo científico publicado en 2020

The small and large intestine contain related mesenchymal subsets that derive from embryonic Gli1+ precursors

The strength of intron donor splice sites in human genes displays a bell-shaped pattern

artículo científico publicado en 2011

The type 1 diabetes - HLA susceptibility interactome--identification of HLA genotype-specific disease genes for type 1 diabetes

artículo científico publicado en 2010

Time-ordered comorbidity correlations identify patients at risk of mis- and overdiagnosis

artículo científico publicado en 2021

Tools and data services registry: a community effort to document bioinformatics resources

artículo científico publicado en 2016

Towards standardization guidelines for in silico approaches in personalized medicine

scientific article published on 24 July 2020

Traces of ATCV-1 associated with laboratory component contamination

artículo científico publicado en 2015

Training neural networks to analyse biological sequences

artículo científico publicado en 1990

Transcriptional interactions suggest niche segregation among microorganisms in the human gut.

artículo científico publicado en 2016

Transcriptome analysis of the adult human Klinefelter testis and cellularity-matched controls reveals disturbed differentiation of Sertoli- and Leydig cells.

artículo científico publicado en 2018

Transcriptome profiling of mice testes following low dose irradiation

artículo científico publicado en 2013

Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil

artículo científico publicado en 2014

Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology

artículo científico publicado en 2012

Unexplored therapeutic opportunities in the human genome

scientific article published on 23 March 2018

Unexplored therapeutic opportunities in the human genome.

artículo científico publicado en 2018

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

artículo científico publicado en 2014

Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts

artículo científico publicado en 2011

Using sequence motifs for enhanced neural network prediction of protein distance constraints

artículo científico publicado en 1999

Viscous Trees and Voronoi-Structure Formation in Expanding Systems

Whole blood co-expression modules associate with metabolic traits and type 2 diabetes: an IMI-DIRECT study

artículo científico publicado en 2020

Whole-Exome Sequencing of 2,000 Danish Individuals and the Role of Rare Coding Variants in Type 2 Diabetes

Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes

artículo científico publicado en 2013

[Infrastructure of clinical support and research in the Danish national genome centre] ⬇️

scientific article published on 01 April 2019

env sequences of simian immunodeficiency viruses from chimpanzees in Cameroon are strongly related to those of human immunodeficiency virus group N from the same geographic area

artículo científico publicado en 2000

hERG classification model based on a combination of support vector machine method and GRIND descriptors

artículo científico publicado en 2008

miRandola 2017: a curated knowledge base of non-invasive biomarkers

artículo científico publicado en 2017

sAOP: Linking chemical stressors to Adverse Outcomes Pathway Networks

artículo científico publicado en 2019

wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases.

artículo científico publicado en 2015

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