Lista de obras -

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses

artículo científico publicado en 2012

A novel association between core mutations in hepatitis B virus genotype F1b and hepatocellular carcinoma in Alaskan Native People.

artículo científico publicado en 2018

A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva

artículo científico publicado en 2007

Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda

artículo científico publicado en 2016

Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres

artículo científico publicado en 2016

Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation

artículo científico publicado en 2019

An evolutionary origin and selection process of goldfish

artículo científico publicado en 2008

Autosomal recessive cone-rod dystrophy associated with compound heterozygous mutations in the EYS gene

artículo científico publicado en 2014

Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay

article

Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies

artículo científico publicado en 2010

Bone Marrow Adipocytes Facilitate Fatty Acid Oxidation Activating AMPK and a Transcriptional Network Supporting Survival of Acute Monocytic Leukemia Cells

artículo científico publicado en 2017

CCT2 Mutations Evoke Leber Congenital Amaurosis due to Chaperone Complex Instability

scientific article published on 20 September 2016

CIBEX: center for information biology gene expression database

artículo científico publicado en 2003

Chromosome engineering allows the efficient isolation of vertebrate neocentromeres.

artículo científico publicado en 2013

Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes

artículo científico publicado en 2008

Cloning and functional analysis of ascidian Mitf in vivo: insights into the origin of vertebrate pigment cells

artículo científico publicado en 2003

Coevolution of axon guidance molecule Slit and its receptor Robo

artículo científico publicado en 2014

Collagen adhesion gene is associated with bloodstream infections caused by methicillin-resistant Staphylococcus aureus

artículo científico publicado en 2019

Comparative analysis of gene expression for convergent evolution of camera eye between octopus and human

artículo científico publicado en 2004

Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens

artículo científico publicado en 2003

Comparative genome analyses of nervous system-specific genes

artículo científico publicado en 2005

Comparative miRNAs analysis of Two contrasting broccoli inbred lines with divergent head-forming capacity under temperature stress

artículo científico publicado en 2015

Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence

artículo científico publicado en 2003

Comparison of gene expression profile of epiretinal membranes obtained from eyes with proliferative vitreoretinopathy to that of secondary epiretinal membranes

artículo científico publicado en 2013

Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein

scientific article published on 17 April 2007

Comprehensive single-cell transcriptome analysis reveals heterogeneity in endometrioid adenocarcinoma tissues

artículo científico publicado en 2017

Congenital Achromatopsia and Macular Atrophy Caused by a Novel Recessive PDE6C Mutation (p.E591K).

artículo científico publicado en 2015

Constitutive centromere-associated network controls centromere drift in vertebrate cells.

artículo científico publicado en 2016

Construction of complete Tupaia belangeri transcriptome database by whole-genome and comprehensive RNA sequencing

scientific article published on 26 August 2019

Correction: Comparison of Gene Expression Profile of Epiretinal Membranes Obtained from Eyes with Proliferative Vitreoretinopathy to That of Secondary Epiretinal Membranes

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

artículo científico publicado en 2007

DDBJ dealing with mass data produced by the second generation sequencer

artículo científico publicado en 2008

DNA Methylome Analysis Identifies Transcription Factor-Based Epigenomic Signatures of Multilineage Competence in Neural Stem/Progenitor Cells

artículo científico publicado en 2017

Degeneration after sexual differentiation in hydra and its relevance to the evolution of aging

artículo científico publicado en 2006

Detection of apoptosis during planarian regeneration by the expression of apoptosis-related genes and TUNEL assay

artículo científico publicado en 2004

Development of a spot reliability evaluation score for DNA microarrays

artículo científico publicado en 2005

Different Endosymbiotic Interactions in Two Hydra Species Reflect the Evolutionary History of Endosymbiosis

artículo científico publicado en 2016

Dissecting planarian central nervous system regeneration by the expression of neural-specific genes

artículo científico publicado en 2002

Distribution and structural diversity of cilia in tadpole larvae of the ascidian Ciona intestinalis

artículo científico publicado en 2009

Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

artículo científico publicado en 2016

Effective gene collection from the metatranscriptome of marine microorganisms ⬇️

artículo científico publicado el 30 de noviembre de 2011

Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site

artículo científico publicado en 2014

Establishment of homozygous knock-out sea urchins

scientific article published on 01 May 2020

Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution

artículo científico publicado en 2005

Eukaryotic nuclear structure explains the evolutionary rate difference of ribosome export factors

artículo científico publicado en 2008

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

artículo científico publicado en 2007

Evolution of metabolic networks by gain and loss of enzymatic reaction in eukaryotes

artículo científico publicado en 2005

Evolutionarily conserved transcription factor Apontic controls the G1/S progression by inducing cyclin E during eye development

artículo científico publicado en 2014

Evolutionary Transitions of MicroRNA-Target Pairs

artículo científico publicado en 2016

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

artículo científico publicado en 2013

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus

artículo científico publicado en 2011

Evolutionary origin of sex-related genes in the mouse brain

artículo científico publicado en 2007

Evolutionary origin of the vertebrate blood complement and coagulation systems inferred from liver EST analysis of lamprey

artículo científico publicado en 2009

Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method

artículo científico publicado en 2010

Evolutionary patterns of recently emerged animal duplogs

artículo científico publicado en 2011

Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level

artículo científico publicado en 2004

FGFR-related gene nou-darake restricts brain tissues to the head region of planarians

artículo científico publicado en 2002

Function and evolutionary origin of unicellular camera-type eye structure

artículo científico publicado en 2015

Gene dosage imbalance of human chromosome 21 in mouse embryonic stem cells differentiating to neurons

artículo científico publicado en 2011

Gene expression profile of fibrovascular membranes from patients with proliferative diabetic retinopathy

artículo científico publicado en 2009

Gene-by-Gene or Localized Dosage Compensation on the Neo-X Chromosome in Drosophila miranda

scientific article published on 01 August 2018

Genome and transcriptome analysis of the food-yeast Candida utilis

artículo científico publicado en 2012

Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection

artículo científico publicado en 2017

Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.

artículo científico publicado en 2016

Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans

artículo científico publicado en 2020

HJURP is involved in the expansion of centromeric chromatin

artículo científico publicado en 2015

HOX genes in the sepiolid squid Euprymna scolopes: implications for the evolution of complex body plans

artículo científico publicado en 2002

Histone H4 Lys 20 monomethylation of the CENP-A nucleosome is essential for kinetochore assembly

artículo científico publicado en 2014

HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus

artículo científico publicado en 2018

Human genome network platform: a resource for TFRN analysis

artículo científico publicado en 2014

Identification of Novel Mutations in the LRR-Cap Domain of C21orf2 in Japanese Patients With Retinitis Pigmentosa and Cone-Rod Dystrophy

artículo científico publicado en 2016

Induction of a noggin-like gene by ectopic DV interaction during planarian regeneration

artículo científico publicado en 2002

Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML

artículo científico publicado en 2022

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like

artículo científico publicado en 2008

Integrated database (2): Data oriented approach to genome network informatics

artículo científico publicado en 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

artículo científico publicado en 2004

Japanese domesticated chickens have been derived from Shamo traditional fighting cocks

scientific article published on 01 October 2004

Lack of interleukin-6 in the tumor microenvironment augments type-1 immunity and increases the efficacy of cancer immunotherapy.

artículo científico publicado en 2017

Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation

artículo científico publicado en 2014

Maser: one-stop platform for NGS big data from analysis to visualization

artículo científico publicado en 2018

Metagenome-based diversity analyses suggest a strong locality signal for bacterial communities associated with oyster aquaculture farms in Ofunato Bay

article

Metatranscriptomic Analysis of Corals Inoculated With Tolerant and Non-Tolerant Symbiont Exposed to High Temperature and Light Stress

artículo científico publicado en 2022

Molecular Cloning of Secreted Luciferases from Marine Planktonic Copepods.

artículo científico publicado en 2016

Molecular hierarchy in neurons differentiated from mouse ES cells containing a single human chromosome 21.

artículo científico publicado en 2004

Molecular phylogeny of ten intertidal hermit crabs of the genus Pagurus inferred from multiple mitochondrial genes, with special emphasis on the evolutionary relationship of Pagurus lanuginosus and Pagurus maculosus

article

Nematogalectin, a nematocyst protein with GlyXY and galectin domains, demonstrates nematocyte-specific alternative splicing in Hydra

artículo científico publicado en 2010

Novel C8orf37 Mutations in Patients with Early-onset Retinal Dystrophy, Macular Atrophy, Cataracts, and High Myopia

artículo científico publicado en 2014

Novel nonsense and splice site mutations in CRB1 gene in two Japanese patients with early-onset retinal dystrophy

artículo científico publicado en 2014

Optimized ancestral state reconstruction using Sankoff parsimony

artículo científico publicado en 2009

Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs

artículo científico publicado en 2003

Pigment cell lineage-specific expression activity of the ascidian tyrosinase-related gene

artículo científico publicado en 2004

Pirfenidone attenuates lung fibrotic fibroblast responses to transforming growth factor-β1

artículo científico publicado en 2019

Prediction of the prototype of the human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome

artículo científico publicado en 2003

RHO Mutations (p.W126L and p.A346P) in Two Japanese Families with Autosomal Dominant Retinitis Pigmentosa.

artículo científico publicado en 2014

RPE65 Mutations in Two Japanese Families with Leber Congenital Amaurosis

artículo científico publicado en 2014

Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity

artículo científico publicado en 2006

Reduced rod electroretinograms in carrier parents of two Japanese siblings with autosomal recessive retinitis pigmentosa associated with PDE6B gene mutations.

artículo científico publicado en 2015

Search for the evolutionary origin of a brain: planarian brain characterized by microarray

artículo científico publicado en 2003

Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics

artículo científico publicado en 2021

Seasonal changes in the abundance of bacterial genes related to dimethylsulfoniopropionate catabolism in seawater from Ofunato Bay revealed by metagenomic analysis

article

Seasonal changes in the communities of photosynthetic picoeukaryotes in Ofunato Bay as revealed by shotgun metagenomic sequencing

article

Specific Features of Fibrotic Lung Fibroblasts Highly Sensitive to Fibrotic Processes Mediated via TGF-β-ERK5 Interaction

scientific article published on 01 January 2019

Specific expression of Gsta4 in mouse cochlear melanocytes: a novel role for hearing and melanocyte differentiation

artículo científico publicado en 2008

Standardization of microarray experiment data

artículo científico publicado en 2003

Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region

artículo científico publicado en 2004

Taxonomic profiles in metagenomic analyses of free-living microbial communities in the Ofunato Bay

article

The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis) ⬇️

artículo científico publicado el 11 de marzo de 2013

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

artículo científico publicado en 2008

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

artículo científico publicado en 2005

The Rice Annotation Project Database (RAP-DB): 2008 update

artículo científico publicado en 2007

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

artículo científico publicado en 2006

The Scaly-foot Snail genome and implications for the origins of biomineralised armour

scientific article published on 08 April 2020

The dynamic genome of Hydra

artículo científico publicado en 2010

The evolutionary emergence of cell type-specific genes inferred from the gene expression analysis of Hydra

artículo científico publicado en 2007

The evolutionary origin of long-crowing chicken: its evolutionary relationship with fighting cocks disclosed by the mtDNA sequence analysis

artículo científico publicado en 2004

The evolutionary position of nematodes

artículo científico publicado en 2002

The evolutionary relationship between gene duplication and alternative splicing

artículo científico publicado en 2008

The evolutionary study of small RNA-directed gene silencing pathways by investigating RNase III enzymes

artículo científico publicado en 2009

The expression of neural-specific genes reveals the structural and molecular complexity of the planarian central nervous system

artículo científico publicado en 2002

The genome stability in Corynebacterium species due to lack of the recombinational repair system ⬇️

artículo científico publicado el 23 de octubre de 2003

The increased frequency of methicillin-resistant Staphylococcus aureus with low MIC of beta-lactam antibiotics isolated from hospitalized patients

artículo científico publicado en 2020

The origin of nucleus: rebuild from the prokaryotic ancestors of ribosome export factors

artículo científico publicado en 2008

The reduction of miR146b-5p in monocytes and T cells could contribute to the immunopathogenesis of hepatitis C virus infection

artículo científico publicado en 2019

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

artículo científico publicado en 2009

Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura

artículo científico publicado en 2013

Transcriptional interferences in cis natural antisense transcripts of humans and mice

artículo científico publicado en 2007

Transcriptomic changes with increasing algal symbiont reveal the detailed process underlying establishment of coral-algal symbiosis

artículo científico publicado en 2018

Two-step evolution of endosymbiosis between hydra and algae

artículo científico publicado en 2016

Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase

artículo científico publicado en 2021

VaProS: a database-integration approach for protein/genome information retrieval

artículo científico publicado en 2016

Where is the origin of the Japanese gamecocks?

artículo científico publicado en 2003

Whole exome analysis identifies frequent CNGA1 mutations in Japanese population with autosomal recessive retinitis pigmentosa

artículo científico publicado en 2014

Whole-exome sequencing identifies a novel ALMS1 mutation (p.Q2051X) in two Japanese brothers with Alström syndrome

artículo científico publicado en 2013

[Genome network]

scientific article published on 01 July 2005

[Integrated database (2): Integrated database for the Genome Network Project]

scientific article published on 01 December 2004

[International public gene expression database (CIBEX) and data submission].

artículo científico publicado en 2004

magp4 gene may contribute to the diversification of cichlid morphs and their speciation

artículo científico publicado en 2006

Lista de obras de

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses

A novel association between core mutations in hepatitis B virus genotype F1b and hepatocellular carcinoma in Alaskan Native People.

A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva

Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda

Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres

Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation

An evolutionary origin and selection process of goldfish

Autosomal recessive cone-rod dystrophy associated with compound heterozygous mutations in the EYS gene

Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay

Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies

Bone Marrow Adipocytes Facilitate Fatty Acid Oxidation Activating AMPK and a Transcriptional Network Supporting Survival of Acute Monocytic Leukemia Cells

CCT2 Mutations Evoke Leber Congenital Amaurosis due to Chaperone Complex Instability

CIBEX: center for information biology gene expression database

Chromosome engineering allows the efficient isolation of vertebrate neocentromeres.

Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes

Cloning and functional analysis of ascidian Mitf in vivo: insights into the origin of vertebrate pigment cells

Coevolution of axon guidance molecule Slit and its receptor Robo

Collagen adhesion gene is associated with bloodstream infections caused by methicillin-resistant Staphylococcus aureus

Comparative analysis of gene expression for convergent evolution of camera eye between octopus and human

Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens

Comparative genome analyses of nervous system-specific genes

Comparative miRNAs analysis of Two contrasting broccoli inbred lines with divergent head-forming capacity under temperature stress

Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence

Comparison of gene expression profile of epiretinal membranes obtained from eyes with proliferative vitreoretinopathy to that of secondary epiretinal membranes

Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein

Comprehensive single-cell transcriptome analysis reveals heterogeneity in endometrioid adenocarcinoma tissues

Congenital Achromatopsia and Macular Atrophy Caused by a Novel Recessive PDE6C Mutation (p.E591K).

Constitutive centromere-associated network controls centromere drift in vertebrate cells.

Construction of complete Tupaia belangeri transcriptome database by whole-genome and comprehensive RNA sequencing

Correction: Comparison of Gene Expression Profile of Epiretinal Membranes Obtained from Eyes with Proliferative Vitreoretinopathy to That of Secondary Epiretinal Membranes

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

DDBJ dealing with mass data produced by the second generation sequencer

DNA Methylome Analysis Identifies Transcription Factor-Based Epigenomic Signatures of Multilineage Competence in Neural Stem/Progenitor Cells

Degeneration after sexual differentiation in hydra and its relevance to the evolution of aging

Detection of apoptosis during planarian regeneration by the expression of apoptosis-related genes and TUNEL assay

Development of a spot reliability evaluation score for DNA microarrays

Different Endosymbiotic Interactions in Two Hydra Species Reflect the Evolutionary History of Endosymbiosis

Dissecting planarian central nervous system regeneration by the expression of neural-specific genes

Distribution and structural diversity of cilia in tadpole larvae of the ascidian Ciona intestinalis

Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition

Effective gene collection from the metatranscriptome of marine microorganisms ⬇️

Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site

Establishment of homozygous knock-out sea urchins

Estimation of ancestral gene set of bilaterian animals and its implication to dynamic change of gene content in bilaterian evolution

Eukaryotic nuclear structure explains the evolutionary rate difference of ribosome export factors

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

Evolution of metabolic networks by gain and loss of enzymatic reaction in eukaryotes

Evolutionarily conserved transcription factor Apontic controls the G1/S progression by inducing cyclin E during eye development

Evolutionary Transitions of MicroRNA-Target Pairs

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus

Evolutionary origin of sex-related genes in the mouse brain

Evolutionary origin of the vertebrate blood complement and coagulation systems inferred from liver EST analysis of lamprey

Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method

Evolutionary patterns of recently emerged animal duplogs

Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level

FGFR-related gene nou-darake restricts brain tissues to the head region of planarians

Function and evolutionary origin of unicellular camera-type eye structure

Gene dosage imbalance of human chromosome 21 in mouse embryonic stem cells differentiating to neurons

Gene expression profile of fibrovascular membranes from patients with proliferative diabetic retinopathy

Gene-by-Gene or Localized Dosage Compensation on the Neo-X Chromosome in Drosophila miranda

Genome and transcriptome analysis of the food-yeast Candida utilis

Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection

Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.

Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans

HJURP is involved in the expansion of centromeric chromatin

HOX genes in the sepiolid squid Euprymna scolopes: implications for the evolution of complex body plans

Histone H4 Lys 20 monomethylation of the CENP-A nucleosome is essential for kinetochore assembly

HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus

Human genome network platform: a resource for TFRN analysis

Identification of Novel Mutations in the LRR-Cap Domain of C21orf2 in Japanese Patients With Retinitis Pigmentosa and Cone-Rod Dystrophy

Induction of a noggin-like gene by ectopic DV interaction during planarian regeneration

Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML

Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like

Integrated database (2): Data oriented approach to genome network informatics

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

Japanese domesticated chickens have been derived from Shamo traditional fighting cocks

Lack of interleukin-6 in the tumor microenvironment augments type-1 immunity and increases the efficacy of cancer immunotherapy.

Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation