Lista de obras - Ruedi Aebersold - Dominio Público Uruguay

7(th) HUPO World Congress of Proteomics: launching the second phase of the HUPOPlasma Proteome Project (PPP-2) 16-20 August 2008, Amsterdam, The Netherlands.

artículo científico publicado en 2009

A Bovine PeptideAtlas of milk and mammary gland proteomes ⬇️

artículo científico publicado el 1 de septiembre de 2012

A Candida albicans PeptideAtlas

artículo científico publicado en 2013

A Case for a Human Immuno-Peptidome Project Consortium

artículo científico publicado en 2017

A Class of Environmental and Endogenous Toxins Induces BRCA2 Haploinsufficiency and Genome Instability.

artículo científico publicado en 2017

A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

artículo científico

A Conserved Mito-Cytosolic Translational Balance Links Two Longevity Pathways

scientific article published on 20 February 2020

A DNA-damage selective role for BRCA1 E3 ligase in claspin ubiquitylation, CHK1 activation, and DNA repair.

artículo científico publicado en 2012

A G protein gamma subunit shares homology with ras proteins.

artículo científico publicado en 1989

A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS

artículo científico publicado en 2020

A High-Density Map for Navigating the Human Polycomb Complexome

scientific journal article

A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein

artículo científico publicado en 2009

A Proteomic Connectivity Map.

artículo científico publicado en 2018

A Simplified Gradient Solvent Delivery System for Capillary Liquid Chromatography–Electrospray Ionization Mass Spectrometry

artículo científico publicado en 1998

A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer

scientific article published on 09 July 2019

A Web Resource for Improved Analysis of AP-MS Protein Interaction Data

artículo científico publicado en 2013

A cellular gene encodes scrapie PrP 27-30 protein

artículo científico publicado en 1985

A common open representation of mass spectrometry data and its application to proteomics research

artículo científico publicado en 2004

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

artículo científico publicado en 2013

A comprehensive characterization of the T-cell antigen receptor complex composition by microcapillary liquid chromatography-tandem mass spectrometry

artículo científico publicado en 2000

A computational tool to detect and avoid redundancy in selected reaction monitoring

artículo científico publicado en 2012

A curated collection of tissue microarray images and clinical outcome data of prostate cancer patients

artículo científico publicado en 2017

A database of mass spectrometric assays for the yeast proteome

artículo científico publicado en 2008

A dataset of human liver proteins identified by protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry

artículo científico publicado en 2004

A first dataset toward a standardized community-driven global mapping of the human immunopeptidome

artículo científico publicado en 2016

A guided tour of the Trans-Proteomic Pipeline

artículo científico publicado en 2010

A high density map for navigating the human Polycomb complexome

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

artículo científico publicado en 2011

A high-quality catalog of the Drosophila melanogaster proteome

artículo científico publicado en 2007

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

A human proteome detection and quantitation project

artículo científico publicado en 2009

A mass spectrometric journey into protein and proteome research

artículo científico publicado en 2003

A mass spectrometric-derived cell surface protein atlas

artículo científico publicado en 2015

A mass spectrometry-based approach for probing enzyme active sites: identification of Glu 127 in Cellulomonas fimi exoglycanase as the residue modified by N-bromoacetyl cellobiosylamine

artículo científico publicado en 1996

A mass spectrometry-based hybrid method for structural modeling of protein complexes

artículo científico

A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine op

artículo científico publicado en 2003

A mouse plasma peptide atlas as a resource for disease proteomics

artículo científico publicado en 2008

A multicenter study benchmarks software tools for label-free proteome quantification

artículo científico publicado en 2016

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model

artículo científico publicado en 2019

A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A

artículo científico publicado en 2004

A novel, evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity

artículo científico publicado en 2005

A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics

artículo científico publicado en 2007

A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans

artículo científico publicado en 2010

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

artículo científico publicado en 2014

A serum protein profile predictive of the resistance to neoadjuvant chemotherapy in advanced breast cancers

artículo científico publicado en 2011

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

artículo científico publicado en 2005

A statistical method for chromatographic alignment of LC-MS data

artículo científico publicado en 2006

A statistical model for identifying proteins by tandem mass spectrometry

artículo científico publicado en 2003

A stress test for mass spectrometry-based proteomics

artículo científico publicado en 2009

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

artículo científico publicado en 2003

A systematic approach to the analysis of protein phosphorylation

artículo científico publicado en 2001

A tissue-based draft map of the murine MHC class I immunopeptidome

article by Heiko Schuster et al published 7 August 2018 in Scientific Data

A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry

artículo científico publicado en 2004

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

artículo científico publicado en 2005

A web site for the rat serum protein study group

scientific article published on 01 December 1999

AP-SWATH reveals direct involvement of VCP/p97 in integrated stress response signaling through facilitating CReP/PPP1R15B degradation

artículo científico publicado en 2018

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry ⬇️

artículo científico publicado el 18 de marzo de 2011

ATM-Dependent and -Independent Dynamics of the Nuclear Phosphoproteome After DNA Damage ⬇️

artículo científico publicado el 7 de diciembre de 2010

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

artículo científico publicado en 2015

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

artículo científico publicado en 2011

Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags

artículo científico publicado en 2007

Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags

artículo científico publicado en 2004

Absolute quantitation of 2-D protein spots

artículo científico publicado en 1999

Abundance ratio-dependent proteomic analysis by mass spectrometry

artículo científico publicado en 2003

Accelerated Protein Biomarker Discovery from FFPE Tissue Samples Using Single-Shot, Short Gradient Microflow SWATH MS

artículo científico publicado en 2020

Activation and serine phosphorylation of the p56lck protein tyrosine kinase in response to antigen receptor cross-linking in B lymphocytes

artículo científico publicado en 1994

Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus.

artículo científico publicado en 2007

Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides

artículo científico publicado en 2005

Advances in protein complex analysis using mass spectrometry

artículo científico publicado en 2004

Advances in proteome analysis by mass spectrometry

artículo científico publicado en 2001

Advances in proteomic workflows for systems biology

artículo científico publicado en 2007

Advances in quantitative proteomics using stable isotope tags

artículo científico publicado en 2002

Advances in quantitative proteomics via stable isotope tagging and mass spectrometry

artículo científico publicado en 2003

Advancing cell biology through proteomics in space and time (PROSPECTS).

artículo científico publicado en 2012

Advancing translational research and precision medicine with targeted proteomics

artículo científico publicado en 2018

An Integrated Microfluidics-Tandem Mass Spectrometry System for Automated Protein Analysis ⬇️

artículo científico publicado el 15 de septiembre de 1998

An SMC-domain protein in fission yeast links telomeres to the meiotic centrosome

artículo científico publicado en 2004

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

artículo científico publicado en 2008

An automated pipeline for high-throughput label-free quantitative proteomics

artículo científico publicado en 2013

An ent-kaurene that inhibits mitotic chromosome movement and binds the kinetochore protein ran-binding protein 2.

artículo científico publicado en 2006

An essential 45 kDa yeast transmembrane protein reacts with anti-nuclear pore antibodies: purification of the protein, immunolocalization and cloning of the gene

artículo científico publicado el 1 de octubre de 1991

An essential switch in subunit composition of a chromatin remodeling complex during neural development

scientific journal article

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

artículo científico publicado en 2007

An integrated mass spectrometric and computational framework for the analysis of protein interaction networks

artículo científico publicado en 2007

An integrated workflow for charting the human interaction proteome: insights into the PP2A system

artículo científico publicado en 2009

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures

artículo científico publicado en 2008

An open-source computational and data resource to analyze digital maps of immunopeptidomes

artículo científico publicado en 2015

Analysis and validation of proteomic data generated by tandem mass spectrometry

artículo científico publicado en 2007

Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry

artículo científico publicado en 2015

Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry

artículo científico publicado en 2008

Analysis of membrane proteins by two-dimensional electrophoresis: comparison of the proteins extracted from normal or Plasmodium falciparum-infected erythrocyte ghosts

artículo científico publicado en 1999

Analysis of protein complexes using mass spectrometry

artículo científico publicado en 2007

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

artículo científico publicado en 2006

Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS.

artículo científico publicado en 2004

Analytical and micropreparative peptide mapping by high performance liquid chromatography/electrospray mass spectrometry of proteins purified by gel electrophoresis

artículo científico publicado en 1993

Androgen receptor represses the neuroendocrine transdifferentiation process in prostate cancer cells

artículo científico publicado en 2003

Antigenic Characterization of the HCMV gH/gL/gO and Pentamer Cell Entry Complexes Reveals Binding Sites for Potently Neutralizing Human Antibodies

artículo científico publicado en 2015

Application of SWATH Proteomics to Mouse Biology

artículo científico publicado en 2017

Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH

artículo científico publicado en 2016

Applications of targeted proteomics in systems biology and translational medicine

artículo científico publicado en 2015

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

artículo científico publicado en 2009

Approaches to labeling and identification of active site residues in glycosidases

artículo científico publicado en 1995

Approaching complete peroxisome characterization by gas-phase fractionation

artículo científico publicado en 2002

Arabidopsis proteome and the mass spectral assay library

artículo científico publicado en 2019

Architecture and conformational switch mechanism of the ryanodine receptor

artículo científico publicado en 2015

Architecture of the large subunit of the mammalian mitochondrial ribosome

artículo científico publicado en 2014

Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics

artículo científico publicado en 2010

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics

artículo científico publicado en 2007

Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation

artículo científico publicado en 2015

Atbf1 is required for the Pit1 gene early activation

artículo científico publicado en 2008

Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase

artículo científico publicado en 2016

Author Correction: Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals

artículo científico publicado en 2019

Author Correction: Proteomic and interactomic insights into the molecular basis of cell functional diversity

scientific article published on 17 April 2020

Author Correction: Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex

artículo científico publicado en 2018

Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms

artículo científico publicado en 2017

Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms

Automated chemical synthesis of a protein growth factor for hemopoietic cells, interleukin-3.

artículo científico publicado en 1986

Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software

artículo científico publicado en 2006

Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies

artículo científico publicado en 2013

Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry

artículo científico publicado en 2003

Automated workflow for large-scale selected reaction monitoring experiments

artículo científico publicado en 2012

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005

article

B cell antigen receptor cross-linking induces phosphorylation of the p21ras oncoprotein activators SHC and mSOS1 as well as assembly of complexes containing SHC, GRB-2, mSOS1, and a 145-kDa tyrosine-phosphorylated protein

scientific journal article

Bace2 is a β cell-enriched protease that regulates pancreatic β cell function and mass

artículo científico publicado en 2011

Bacterial effector binds host cell adenylyl cyclase to potentiate Gαs-dependent cAMP production

artículo científico publicado en 2012

Beyond ATM: The protein kinase landscape of the DNA damage response ⬇️

artículo científico publicado el 8 de mayo de 2011

Biomarker Validation in Blood Specimens by Selected Reaction Monitoring Mass Spectrometry of N-Glycosites ⬇️

artículo científico publicado el 1 de enero de 2011

BiomarkerDigger: a versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers

artículo científico

Biosynthesis of dermatan sulfate: chondroitin-glucuronate C5-epimerase is identical to SART2

artículo científico publicado en 2006

Both phosphatidylinositol 3-kinase and phosphatidylinositol 4-kinase products are increased by antigen receptor signaling in B cells

artículo científico publicado en 1994

Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry

scientific article published on 01 July 2019

Building ProteomeTools based on a complete synthetic human proteome

artículo científico publicado en 2017

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics

artículo científico publicado en 2011

Building consensus spectral libraries for peptide identification in proteomics

artículo científico publicado en 2008

Building high-quality assay libraries for targeted analysis of SWATH MS data

artículo científico publicado en 2015

CD28 stimulation regulates its association withN-ethylmaleimide-sensitive fusion protein and other proteins involved in vesicle sorting ⬇️

artículo científico publicado el 1 de enero de 2001

CTCF physically links cohesin to chromatin

artículo científico publicado en 2008

Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer

artículo científico publicado en 2011

Cell polarity protein Spa2P associates with proteins involved in actin function in Saccharomyces cerevisiae

artículo científico publicado en 2005

Ceramide profiling of complex lipid mixtures by electrospray ionization mass spectrometry

scientific article published on 01 January 1997

Challenges and opportunities in proteomics data analysis

artículo científico publicado en 2006

Characterization and kinetic analysis of the intracellular domain of human protein tyrosine phosphatase beta (HPTP beta) using synthetic phosphopeptides

artículo científico publicado en 1994

Characterization of a DNA exit gate in the human cohesin ring.

artículo científico publicado en 2014

Characterization of a major protein in GLUT4 vesicles. Concentration in the vesicles and insulin-stimulated translocation to the plasma membrane

scientific journal article

Characterization of an activated ribosomal S6 kinase variant from maturing sea star oocytes: association with phosphatase 2A and substrate specificity

artículo científico publicado en 1999

Characterization of human serum amyloid A protein isoforms separated by two-dimensional electrophoresis by liquid chromatography/electrospray ionization tandem mass spectrometry

artículo científico publicado en 1996

Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis

artículo científico publicado en 2009

Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry

artículo científico publicado en 2010

Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens

artículo científico publicado en 2014

Chemical Cross-Linking/Mass Spectrometry Maps the Amyloid β Peptide Binding Region on Both Apolipoprotein E Domains

artículo científico publicado en 2015

Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9

artículo científico publicado en 2020

Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes

artículo científico publicado en 2014

Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes

artículo científico publicado en 2004

ChromID identifies the protein interactome at chromatin marks

artículo científico publicado en 2020

Colloidal silver staining of electroblotted proteins for high sensitivity peptide mapping by liquid chromatography-electrospray ionization tandem mass spectrometry

scientific article published on 01 May 1997

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

artículo científico publicado en 2018

Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.

artículo científico publicado en 2019

Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases

artículo científico publicado en 2009

Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics

artículo científico publicado en 2007

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

artículo científico publicado en 2009

Comparative ’omics analyses differentiateMycobacterium tuberculosisandMycobacterium bovisand reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

article

Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification

scientific article published on February 2009

Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis

artículo científico publicado en 2007

Complementary analysis of the Mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope-coded affinity tag technology

artículo científico publicado en 2003

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

artículo científico publicado en 2002

Complex-centric proteome profiling by SEC-SWATH-MS

Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes

artículo científico publicado en 2020

Comprehensive Description of the N-Glycoproteome of Mouse Pancreatic β-Cells and Human Islets ⬇️

artículo científico publicado el 27 de enero de 2012

Comprehensive analyses of prostate gene expression: convergence of expressed sequence tag databases, transcript profiling and proteomics

artículo científico publicado en 2000

Comprehensive proteome analysis of human skeletal muscle in cachexia and sarcopenia: a pilot study

artículo científico publicado en 2017

Comprehensive proteomics

artículo científico publicado en 2010

Comprehensive quantitative analysis of central carbon and amino‐acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics ⬇️

artículo científico publicado el 1 de febrero de 2011

Computational prediction of proteotypic peptides for quantitative proteomics

artículo científico publicado en 2006

Confident site localization using a simulated phosphopeptide spectral library

artículo científico publicado en 2015

Conformational control and DNA-binding mechanism of the metazoan origin recognition complex

article published in the Proceedings of the National Academy of Sciences of the United States of America

Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics

artículo científico publicado en 2014

Constellations in a cellular universe

artículo científico publicado en 2003

Contribution of Mass Spectrometry-Based Proteomics to the Understanding of TNF-α Signaling

artículo científico publicado en 2016

Convergent network effects along the axis of gene expression during prostate cancer progression

artículo científico publicado en 2020

Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans

artículo científico publicado en 2015

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach

artículo científico publicado en 2002

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics

artículo científico publicado en 2008

Covalent attachment of peptides for high sensitivity solid-phase sequence analysis

artículo científico publicado en 1990

Cross-link guided molecular modeling with ROSETTA

artículo científico publicado en 2013

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

artículo científico publicado en 2018

Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines

artículo científico publicado en 2015

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage ⬇️

artículo científico publicado el 6 de marzo de 2012

Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation

artículo científico publicado en 2015

Crucial step in cholesterol homeostasis: sterols promote binding of SCAP to INSIG-1, a membrane protein that facilitates retention of SREBPs in ER

artículo científico publicado en 2002

CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation

scientific article published on 02 September 2019

DIGESTIF: a universal quality standard for the control of bottom-up proteomics experiments.

artículo científico publicado en 2014

DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery

scientific article published on 11 August 2020

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics

artículo científico publicado en 2008

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial

scholarly article by Christina Ludwig et al published 13 August 2018 in Molecular Systems Biology

Deciphering MET-dependent modulation of global cellular responses to DNA damage by quantitative phosphoproteomics

artículo científico publicado en 2020

Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins

artículo científico publicado en 2011

Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival

artículo científico publicado en 2017

Design and synthesis of visible isotope-coded affinity tags for the absolute quantification of specific proteins in complex mixtures

artículo científico publicado en 2004

Development and validation of a spectral library searching method for peptide identification from MS/MS.

artículo científico publicado en 2007

Development of a Multiplexed Microcapillary Liquid Chromatography System for High-Throughput Proteome Analysis

article

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

artículo científico publicado en 2021

Differential Plasma Glycoproteome of p19 Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform

artículo científico publicado en 2008

Differential glucose repression in common yeast strains in response to HXK2 deletion

artículo científico publicado en 2010

Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation.

artículo científico publicado en 2001

Direct analytical sample quality assessment for biomarker investigation: qualifying cerebrospinal fluid samples

artículo científico publicado en 2014

Direct identification of a G protein ubiquitination site by mass spectrometry

artículo científico publicado en 2002

Direct identification of ligand-receptor interactions on living cells and tissues

artículo científico publicado en 2012

Directed mass spectrometry: towards hypothesis-driven proteomics

scientific article published on 21 September 2009

Disentangling Genetic and Environmental Effects on the Proteotypes of Individuals

artículo científico publicado en 2019

Dual specificity kinase DYRK3 couples stress granule condensation/dissolution to mTORC1 signaling

scientific journal article

Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics

artículo científico publicado en 2003

Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis

artículo científico publicado en 2015

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

artículo científico publicado en 2005

Early Steps in Autophagy Depend on Direct Phosphorylation of Atg9 by the Atg1 Kinase.

artículo científico publicado en 2014

Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase.

artículo científico publicado en 2014

Editorial: from data to results

artículo científico publicado en 2011

Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.

artículo científico publicado en 2015

Electron transfer dissociation in conjunction with collision activation to investigate the Drosophila melanogaster phosphoproteome

artículo científico publicado en 2009

Electrophoresis combined with novel mass spectrometry techniques: powerful tools for the analysis of proteins and proteomes.

artículo científico publicado en 1998

Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data

scientific article published on 01 August 2019

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

artículo científico publicado en 2002

Endolysosomal sorting of ubiquitylated caveolin-1 is regulated by VCP and UBXD1 and impaired by VCP disease mutations

artículo científico publicado en 2011

Enzymatic generation of peptides flanked by basic amino acids to obtain MS/MS spectra with 2× sequence coverage

artículo científico publicado en 2014

Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals

artículo científico publicado en 2016

Epigenetics and Proteomics Join Transcriptomics in the Quest for Tuberculosis Biomarkers

artículo científico publicado en 2015

Equipping scientists for the new biology

artículo científico publicado en 2000

Erratum: A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans

scholarly article published in Nature Methods

Erratum: Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex.

artículo científico publicado en 2014

Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry ⬇️

artículo científico publicado el 20 de noviembre de 2011

Evaluation of two-dimensional phosphopeptide maps by electrospray ionization mass spectrometry of recovered peptides

scientific article published on 01 November 1994

Evolution of organelle-associated protein profiling

artículo científico publicado en 2008

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

artículo científico publicado en 2012

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance

scientific article published on 06 July 2021

Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas

artículo científico publicado en 2013

F2(Pmp)2-TAM zeta 3, a novel competitive inhibitor of the binding of ZAP-70 to the T cell antigen receptor, blocks early T cell signaling

artículo científico publicado en 1995

FRI-297-Trans-signaling blockade induces mature-onset obesity and insulin resistance in mice via suppression of PPARalpha

scholarly article

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

artículo científico publicado en 2012

Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry

artículo científico publicado en 2015

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

artículo científico publicado en 2019

From genome to proteome--aim of human proteomics.

artículo científico publicado en 2004

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

artículo científico publicado en 2009

Functionalized membrane supports for covalent protein microsequence analysis

artículo científico publicado en 1991

GIT1 Mediates Src-dependent Activation of Phospholipase Cγ by Angiotensin II and Epidermal Growth Factor ⬇️

artículo científico publicado el 30 de septiembre de 2003

Gene expression analyzed by high-resolution state array analysis and quantitative proteomics: response of yeast to mating pheromone

artículo científico publicado en 2004

Generating and navigating proteome maps using mass spectrometry.

artículo científico publicado en 2010

Generation of a zebrafish SWATH-MS spectral library to quantify 10,000 proteins

artículo científico publicado en 2019

Generic comparison of protein inference engines

artículo científico publicado en 2011

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

scholarly article by Teresa Cortes et al published January 2014 in Cell Reports

Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis

artículo científico publicado en 2013

Genomic, Proteomic and Phenotypic Heterogeneity in HeLa Cells across Laboratories: Implications for Reproducibility of Research Results

Genotype–phenotype relationships in light of a modular protein interaction landscape ⬇️

artículo científico publicado el 26 de marzo de 2013

Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes

scientific article published on 18 February 2020

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

artículo científico publicado en 2009

Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress

artículo científico publicado en 2015

Glu280 is the nucleophile in the active site of Clostridium thermocellum CelC, a family A endo-beta-1,4-glucanase

artículo científico publicado en 1993

Glucagon-Induced Acetylation of Foxa2 Regulates Hepatic Lipid Metabolism ⬇️

artículo científico publicado el 14 de febrero de 2013

Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

artículo científico publicado en 2014

Guidelines for reporting the use of mass spectrometry in proteomics.

artículo científico publicado en 2008

HUPO Plasma Proteome Project 2007 Workshop Report

Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry

artículo científico publicado en 2009

High sensitivity analysis of proteins and peptides by capillary electrophoresis-tandem mass spectrometry: recent developments in technology and applications.

artículo científico publicado en 1998

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

artículo científico publicado en 2007

High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: initial comparison between an ion trap mass spectrometer and a triple quadrupole mass spectrometer

scientific article published on 01 March 1997

High throughput protein characterization by automated reverse‐phase chromatography/electrospray tandem mass spectrometry ⬇️

artículo científico publicado el 1 de marzo de 1998

High throughput proteome screening for biomarker detection

artículo científico publicado en 2005

High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry

artículo científico publicado en 2004

High-accuracy proteome maps of human body fluids

artículo científico publicado en 2006

High-sensitivity determination of tyrosine-phosphorylated peptides by on-line enzyme reactor and electrospray ionization mass spectrometry

artículo científico publicado en 1995

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

artículo científico publicado en 2009

High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification

scientific article published on 18 September 2019

Highlights of B/D-HPP and HPP Resource Pillar Workshops at 12th Annual HUPO World Congress of Proteomics: September 14-18, 2013, Yokohama, Japan

artículo científico publicado en 2014

Highlights of the Biology and Disease-driven Human Proteome Project, 2015-2016.

scientific article published on 30 August 2016

How many human proteoforms are there?

artículo científico publicado en 2018

Human Plasma PeptideAtlas

artículo científico publicado en 2005

Human Proteome Organisation Proteomics Standards Initiative Pre-Congress Initiative

article

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

artículo científico publicado en 2016

Human RECQ1 promotes restart of replication forks reversed by DNA topoisomerase I inhibition

artículo científico publicado en 2013

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

artículo científico publicado en 2016

Huntingtin's spherical solenoid structure enables polyglutamine tract-dependent modulation of its structure and function

artículo científico publicado en 2016

ICAT-MS-MS time course analysis of atrophying mouse skeletal muscle cytosolic subproteome

artículo científico publicado en 2005

IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics

scientific article published on 21 June 2011

Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex

artículo científico publicado en 2006

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

artículo científico publicado en 2009

Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry ⬇️

artículo científico publicado el 18 de mayo de 2003

Identification of CDK2 substrates in human cell lysates

artículo científico publicado en 2008

Identification of Cdk targets that control cytokinesis

artículo científico publicado en 2015

Identification of Glu340 as the active-site nucleophile in human glucocerebrosidase by use of electrospray tandem mass spectrometry

scientific article published on 01 April 1994

Identification of Protein Abundance Changes in Hepatocellular Carcinoma Tissues using PCT-SWATH

artículo científico publicado en 2018

Identification of Proteins in Single-Cell Capillary Electrophoresis Fingerprints Based on Comigration with Standard Proteins ⬇️

artículo científico publicado el 15 de julio de 2003

Identification of TFB5, a new component of general transcription and DNA repair factor IIH.

artículo científico publicado en 2004

Identification of a Novel Phosphorylation Site, Ser-170, as a Regulator of Bad Pro-apoptotic Activity ⬇️

artículo científico publicado el 20 de noviembre de 2001

Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry

artículo científico publicado en 2015

Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring

artículo científico publicado en 2013

Identification of androgen-coregulated protein networks from the microsomes of human prostate cancer cells

artículo científico publicado en 2003

Identification of cross-linked peptides from large sequence databases

artículo científico publicado en 2008

Identification of gel-separated proteins by liquid chromatography-electrospray tandem mass spectrometry: comparison of methods and their limitations.

artículo científico publicado en 1998

Identification of glutamic acid 78 as the active site nucleophile in Bacillus subtilis xylanase using electrospray tandem mass spectrometry

artículo científico

Identification of protein complexes required for efficient sister chromatid cohesion

artículo científico publicado en 2004

Identification of putative androgen receptor interaction protein modules: cytoskeleton and endosomes modulate androgen receptor signaling in prostate cancer cells

artículo científico publicado en 2006

Identification of the target of monoclonal antibody A6H as dipeptidyl peptidase IV/CD26 by LC MS\MS.

artículo científico publicado en 2001

Impact of Alternative Splicing on the Human Proteome

artículo científico publicado en 2017

Improving mass and liquid chromatography based identification of proteins using bayesian scoring

artículo científico publicado en 2005

In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells

artículo científico publicado en 2017

Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics ⬇️

artículo científico publicado el 27 de julio de 2010

Increased quantitative proteome coverage with (13)C/(12)C-based, acid-cleavable isotope-coded affinity tag reagent and modified data acquisition scheme

artículo científico publicado en 2005

Index-ion triggered MS2 ion quantification: a novel proteomics approach for reproducible detection and quantification of targeted proteins in complex mixtures

artículo científico publicado en 2010

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.

artículo científico publicado en 2017

Inferring causal metabolic signals that regulate the dynamic TORC1-dependent transcriptome

artículo científico publicado en 2015

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation

artículo científico publicado en 2016

Insights into EB1 structure and the role of its C-terminal domain for discriminating microtubule tips from the lattice

artículo científico publicado en 2011

Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex

article published in the Proceedings of the National Academy of Sciences of the United States of America

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

artículo científico publicado en 2001

Integrated genomic and proteomic analyses of gene expression in Mammalian cells

artículo científico publicado en 2004

Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis

artículo científico

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

artículo científico publicado en 2005

Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibility

artículo científico publicado en 2023

Integrative structural investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding

artículo científico publicado en 2018

Interaction proteome of human Hippo signaling: modular control of the co-activator YAP1

artículo científico publicado en 2013

Interactome of the Amyloid Precursor Protein APP in Brain Reveals a Protein Network Involved in Synaptic Vesicle Turnover and a Close Association with Synaptotagmin-1 ⬇️

artículo científico publicado el 19 de julio de 2012

Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS

artículo científico publicado en 2013

Interpretation of shotgun proteomic data: the protein inference problem

artículo científico publicado en 2005

Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence

artículo científico publicado en 2007

Investigation of neutral loss during collision-induced dissociation of peptide ions

artículo científico publicado en 2005

Isolation and characterization of the 160,000-Da phosphotyrosyl protein, a putative participant in insulin signaling

artículo científico publicado en 1991

Isolation of N-linked glycopeptides from plasma

scientific article published on 26 June 2007

Isolation of glycoproteins and identification of their N-linked glycosylation sites

scientific article published on 01 January 2006

Isotope-Coded Affinity Tagging of Proteins ⬇️

artículo científico publicado el 1 de julio de 2007

Joining forces: integrating proteomics and cross-linking with the mass spectrometry of intact complexes

artículo científico publicado en 2011

Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases

scientific article published on 17 July 2020

LC-MS solvent composition monitoring and chromatography alignment using mobile phase tracer molecules

artículo científico publicado en 2005

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

Lipid raft proteins and their identification in T lymphocytes.

artículo científico publicado en 2004

Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach

artículo científico publicado en 2018

Liquid chromatography-electrospray ionization mass spectrometry of 4-(3-pyridinylmethylaminocarboxypropyl) phenylthiohydantoins

scientific article published on 01 January 1995

Liver ubiquitome uncovers nutrient-stress-mediated trafficking and secretion of complement C3

scientific article published on 13 October 2016

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

artículo científico publicado en 2013

MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans

scientific article published on 06 February 2019

MPSA short communications

article by Eugene M. Barnes et al published July 1994 in The Protein Journal

MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis

artículo científico publicado en 2008

MaRiMba: a software application for spectral library-based MRM transition list assembly

artículo científico publicado en 2009

Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition

artículo científico publicado en 2013

Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen

artículo científico publicado en 2021

Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae

artículo científico publicado en 2011

Mass Spectrometric Characterization of Proteins Extracted from Jurkat T Cell Detergent-Resistant Membrane Domains

Mass Spectrometric Exploration of the Biochemical Basis of Living Systems

artículo científico publicado en 2019

Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing

artículo científico publicado en 2016

Mass Spectrometry in Proteomics ⬇️

artículo científico publicado el 1 de febrero de 2001

Mass spectrometric approaches for the identification of gel-separated proteins

artículo científico publicado en 1995

Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains ⬇️

artículo científico publicado el 1 de agosto de 2001

Mass spectrometric detection of tissue proteins in plasma

artículo científico publicado en 2006

Mass spectrometric protein maps for biomarker discovery and clinical research

scientific article published on 21 October 2013

Mass spectrometry and protein analysis

artículo científico publicado en 2006

Mass spectrometry and proteomics

artículo científico publicado en 2000

Mass spectrometry based glycoproteomics--from a proteomics perspective

artículo científico publicado en 2010

Mass spectrometry based targeted protein quantification: methods and applications

artículo científico publicado en 2009

Mass spectrometry in high-throughput proteomics: ready for the big time.

artículo científico publicado en 2010

Mass spectrometry of proteins and peptides in biotechnology

artículo científico publicado en 1993

Mass spectrometry supported determination of protein complex structure

artículo científico publicado en 2013

Mass spectrometry-based expression profiling of clinical prostate cancer

artículo científico publicado en 2005

Mass spectrometry-based proteomic quest for diabetes biomarkers

artículo científico

Mass spectrometry-based proteomics

artículo científico publicado en 2003

Mass spectrometry-based proteomics and network biology

artículo científico

Mass spectrometry-based proteomics for systems biology

artículo científico publicado en 2011

Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic

artículo científico publicado en 2013

Mass-spectrometric exploration of proteome structure and function

artículo científico publicado en 2016

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

artículo científico publicado en 2009

Measuring gene expression by quantitative proteome analysis

artículo científico publicado en 2000

Meeting Report on the 7th World Congress of the Human Proteome Organization (HUPO) in Amsterdam

article

Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

artículo científico publicado en 2022

Microbial Proteome Profiling and Systems Biology: Applications to Mycobacterium tuberculosis

artículo científico publicado en 2015

Microfabricated device coupled with an electrospray ionization quadrupole time-of-flight mass spectrometer: protein identifications based on enhanced-resolution mass spectrometry and tandem mass spectrometry data ⬇️

artículo científico publicado el 1 de enero de 1998

Microfabricated modules for sample handling, sample concentration and flow mixing: application to protein analysis by tandem mass spectrometry

artículo científico publicado en 1999

Microspotting streptavidin and double-stranded DNA arrays on gold for high-throughput studies of protein-DNA interactions by surface plasmon resonance microscopy

artículo científico publicado en 2004

Mild Acid Elution and MHC Immunoaffinity Chromatography Reveal Similar Albeit Not Identical Profiles of the HLA Class I Immunopeptidome

artículo científico publicado en 2020

Minimal sample requirement for highly multiplexed protein quantification in cell lines and tissues by PCT-SWATH mass spectrometry

artículo científico publicado en 2015

Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-30

scientific article published on 01 June 2020

Model organism proteomics

artículo científico publicado en 2010

Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome

artículo científico publicado en 2011

Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase

artículo científico publicado en 2014

Molecular Architecture of Yeast Chromatin Assembly Factor 1.

artículo científico publicado en 2016

Molecular Basis of the Rapamycin Insensitivity of Target Of Rapamycin Complex 2.

artículo científico publicado en 2015

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.

artículo científico publicado en 2017

Molecular architecture of human polycomb repressive complex 2

artículo científico publicado en 2012

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

artículo científico publicado en 2012

Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

artículo científico publicado en 2014

Molecular architecture of the ATP-dependent chromatin-remodeling complex SWR1.

artículo científico publicado en 2013

Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2

scientific article published in Nature Communications

Molecular basis of AKAP79 regulation by calmodulin

artículo científico publicado en 2017

Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth

artículo científico publicado en 2011

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

artículo científico publicado en 2017

Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes

scientific article published on 16 July 2020

Multi-omic measurements of heterogeneity in HeLa cells across laboratories

artículo científico publicado en 2019

Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers

artículo científico publicado en 2018

Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population

artículo científico publicado en 2014

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

artículo científico publicado en 2021

Multiomic profiling of the liver across diets and age in a diverse mouse population

artículo científico publicado en 2022

Multiple cytokines activate phosphatidylinositol 3-kinase in hemopoietic cells. Association of the enzyme with various tyrosine-phosphorylated proteins.

artículo científico publicado en 1994

Multiplexed Targeted Mass Spectrometry-Based Assays for the Quantification of N-Linked Glycosite-Containing Peptides in Serum

artículo científico publicado en 2015

Mutant huntingtin impairs axonal trafficking in mammalian neurons in vivo and in vitro

artículo científico publicado en 2004

Mycobacterium tuberculosis in the Proteomics Era.

artículo científico

N-acetylation and ubiquitin-independent proteasomal degradation of p21(Cip1).

artículo científico publicado en 2004

N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications

artículo científico publicado en 2013

N-glycoprotein profiling of lung adenocarcinoma pleural effusions by shotgun proteomics

artículo científico publicado en 2008

NAD⁺ repletion improves mitochondrial and stem cell function and enhances life span in mice

artículo científico publicado en 2016

Nanoflow Solvent Gradient Delivery from a Microfabricated Device for Protein Identifications by Electrospray Ionization Mass Spectrometry ⬇️

artículo científico publicado el 15 de septiembre de 1998

New and improved proteomics technologies for understanding complex biological systems: addressing a grand challenge in the life sciences

artículo científico publicado en 2012

Non-invasive prognostic protein biomarker signatures associated with colorectal cancer

artículo científico publicado en 2015

Novel prognostic markers in the serum of patients with castration-resistant prostate cancer derived from quantitative analysis of the pten conditional knockout mouse proteome

artículo científico publicado en 2011

On the Dependency of Cellular Protein Levels on mRNA Abundance

artículo científico publicado en 2016

On the Development of Plasma Protein Biomarkers ⬇️

artículo científico publicado el 13 de diciembre de 2010

On the contribution of mass spectrometry-based platforms to the field of personalized oncology

artículo científico publicado en 2019

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

artículo científico publicado en 2016

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

artículo científico publicado en 2014

Optimization of reversed-phase microcapillary liquid chromatography for quantitative proteomics

artículo científico publicado en 2004

Optimization of solid phase microextraction ‐ capillary zone electrophoresis ‐ mass spectrometry for high sensitivity protein identification ⬇️

artículo científico publicado el 1 de octubre de 1998

Optimization of the isotope-coded affinity tag-labeling procedure for quantitative proteome analysis

artículo científico publicado en 2001

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

artículo científico publicado en 2006

Options and considerations when selecting a quantitative proteomics strategy

artículo científico publicado en 2010

Orm family proteins mediate sphingolipid homeostasis

artículo científico publicado en 2010

Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes

artículo científico publicado en 2020

Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

artículo científico publicado en 2005

PASSEL: The PeptideAtlas SRMexperiment library ⬇️

artículo científico publicado el 1 de abril de 2012

PRIME-XS, a European infrastructure for proteomics

artículo científico publicado en 2014

PTPH1 is a predominant protein-tyrosine phosphatase capable of interacting with and dephosphorylating the T cell receptor zeta subunit

artículo científico publicado en 2003

Painting a moving picture: large-scale proteomics efforts and their potential for changing patient care

artículo científico

Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape

artículo científico publicado en 2005

Parallel, quantitative measurement of protein binding to a 120-element double-stranded DNA array in real time using surface plasmon resonance microscopy

artículo científico publicado en 2004

Peptide electroextraction for direct coupling of in-gel digests with capillary LC-MS/MS for protein identification and sequencing

artículo científico publicado en 2000

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data

artículo científico publicado en 2015

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

artículo científico publicado en 2008

Perspective: A Program to Improve Protein Biomarker Discovery for Cancer†

Perspectives of targeted mass spectrometry for protein biomarker verification

artículo científico publicado en 2009

Phase 2 trial of single-agent everolimus in chemotherapy-naive patients with castration-resistant prostate cancer (SAKK 08/08).

artículo científico publicado en 2013

PhosphoPep--a database of protein phosphorylation sites in model organisms

artículo científico publicado en 2008

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

artículo científico publicado en 2007

Phosphoproteome resource for systems biology research

artículo científico publicado en 2011

Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast

artículo científico publicado en 2014

Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling

artículo científico publicado en 2014

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast

artículo científico publicado en 2010

Phosphoproteomics reveals novel modes of function and inter-relationships among PIKKs in response to genotoxic stress

scientific article published on 20 November 2020

Phosphorylation of Nup98 by multiple kinases is crucial for NPC disassembly during mitotic entry

artículo científico publicado en 2011

Phosphorylation of eIF-4E on serine 209 by protein kinase C is inhibited by the translational repressors, 4E-binding proteins

artículo científico publicado en 1996

Phosphorylation of serine 59 of p56lck in activated T cells.

artículo científico publicado en 1993

Phosphorylation of the pro-apoptotic protein Bim in lymphocytes is associated with protection from apoptosis ⬇️

artículo científico publicado el 1 de junio de 2003

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry.

scientific article published on March 2017

Prediction of colorectal cancer diagnosis based on circulating plasma proteins

artículo científico publicado en 2015

Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

artículo científico publicado en 2009

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

artículo científico publicado en 2002

ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer

artículo científico publicado en 2005

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

artículo científico publicado en 2010

Protein analysis by mass spectrometry and sequence database searching: tools for cancer research in the post-genomic era.

artículo científico publicado en 1999

Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing

artículo científico publicado en 2006

Protein expression changes in ovarian cancer during the transition from benign to malignant

artículo científico publicado en 2012

Protein identification by solid phase microextraction—capillary zone electrophoresis—microelectrospray—tandem mass spectrometry ⬇️

artículo científico publicado el 1 de noviembre de 1996

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

artículo científico publicado en 2009

Protein identification with a single accurate mass of a cysteine-containing peptide and constrained database searching

artículo científico publicado en 2000

Protein identification: the good, the bad, and the ugly

artículo científico publicado en 2005

Protein kinase D at the Golgi controls NLRP3 inflammasome activation.

artículo científico publicado en 2017

Protein significance analysis in selected reaction monitoring (SRM) measurements

artículo científico publicado en 2011

Proteins That Underlie Neoplastic Progression of Ulcerative Colitis

artículo científico publicado en 2009

Proteins of rat serum V: adjuvant arthritis and its modulation by nonsteroidal anti-inflammatory drugs

artículo científico publicado en 2000

Proteins of rat serum: I. Establishing a reference two-dimensional electrophoresis map by immunodetection and microbore high performance liquid chromatography-electrospray mass spectrometry.

artículo científico publicado en 1998

Proteins of rat serum: II. Influence of some biological parameters of the two-dimensional electrophoresis pattern.

artículo científico publicado en 1998

Proteins of rat serum: III. Gender-related differences in protein concentration under baseline conditions and upon experimental inflammation as evaluated by two-dimensional electrophoresis

artículo científico publicado en 1999

Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter

artículo científico publicado en 2006

Proteome analysis of Legionella vacuoles purified by magnetic immunoseparation reveals secretory and endosomal GTPases

artículo científico publicado en 2009

Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags

artículo científico publicado en 2002

Proteome analysis: biological assay or data archive?

artículo científico publicado en 1998

Proteome coverage prediction for integrated proteomics datasets

artículo científico publicado en 2011

Proteome coverage prediction with infinite Markov models

artículo científico publicado en 2009

Proteome organization in a genome-reduced bacterium

scientific journal article

Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster

artículo científico publicado en 2016

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

artículo científico publicado en 2009

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes ⬇️

artículo científico publicado el 1 de enero de 2012

Proteomic analysis identifies that 14-3-3zeta interacts with beta-catenin and facilitates its activation by Akt.

scholarly article

Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation

article

Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.

artículo científico publicado en 2003

Proteomic analysis of synaptosomes using isotope-coded affinity tags and mass spectrometry

artículo científico publicado en 2005

Proteomic analysis of the binding partners to enteropathogenic Escherichia coli virulence proteins expressed in Saccharomyces cerevisiae

artículo científico publicado en 2006

Proteomic analysis reveals drug accessible cell surface N-glycoproteins of primary and established glioblastoma cell lines

artículo científico publicado en 2012

Proteomic and interactomic insights into the molecular basis of cell functional diversity

scientific article published on 31 March 2020

Proteomic approaches for the identification of cell cycle-related drug targets

artículo científico publicado el 1 de enero de 2003

Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells.

artículo científico publicado en 2010

Proteomic identification of a marker signature for MAPKi resistance in melanoma

scientific article published on 26 June 2019

Proteomic identification of proliferation and progression markers in human polycythemia vera stem and progenitor cells

Proteomic profiling of pancreatic cancer for biomarker discovery

artículo científico publicado en 2005

Proteomics analysis of cellular response to oxidative stress. Evidence for in vivo overoxidation of peroxiredoxins at their active site

artículo científico publicado en 2002

Proteomics goes parallel

artículo científico publicado en 2018

Proteomics meets the scientific method.

artículo científico publicado en 2013

Proteomics of Pyrococcus furiosus (Pfu): Identification of Extracted Proteins by Three Independent Methods ⬇️

artículo científico publicado el 18 de enero de 2013

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

artículo científico publicado en 2008

Proteomics studies of pancreatic cancer

artículo científico publicado en 2007

Proteomics--advances, applications and the challenges that remain

artículo científico publicado en 2002

Proteomics/genomics and signaling in lymphocytes

artículo científico publicado en 2004

Publisher Correction: ChromID identifies the protein interactome at chromatin marks

artículo científico publicado en 2020

Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

scientific article published on 01 March 2020

Puf6 primes 60S pre-ribosome nuclear export at low temperature

artículo científico publicado en 2021

Purification and identification of tyrosine-phosphorylated proteins from B lymphocytes stimulated through the antigen receptor

artículo científico publicado en 1994

Purification and initial characterization of the lymphocyte-specific protein-tyrosyl kinase p56lck from a baculovirus expression system

artículo científico publicado en 1992

Purification of Bovine Thymus Cytosolic C-Terminal Src Kinase (CSK) and Demonstration of Differential Efficiencies of Phosphorylation and Inactivation of p56lynand pp60c-srcby CSK†

artículo científico publicado en 1996

Purification of trypsin for mass spectrometric identification of proteins at high sensitivity.

artículo científico publicado en 1998

Quantification of ErbB network proteins in three cell types using complementary approaches identifies cell-general and cell-type-specific signaling proteins

artículo científico

Quantification of mRNA and protein and integration with protein turnover in a bacterium

artículo científico

Quantifying and Localizing the Mitochondrial Proteome Across Five Tissues in A Mouse Population

scientific article published on 26 June 2018

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

artículo científico publicado en 2013

Quantitative ADME proteomics - CYP and UGT enzymes in the Beagle dog liver and intestine

artículo científico publicado en 2014

Quantitative Analysis of Protein Complex Constituents and Their Phosphorylation States on a LTQ-Orbitrap Instrument ⬇️

artículo científico publicado el 1 de octubre de 2010

Quantitative Interactomics in Primary T Cells Provides a Rationale for Concomitant PD-1 and BTLA Coinhibitor Blockade in Cancer Immunotherapy

artículo científico publicado en 2019

Quantitative Proteome Analysis: Methods and Applications

artículo científico publicado en 2003

Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines

artículo científico publicado en 2019

Quantitative Proteomic Analysis of Metabolic Regulation by Copper Ions inMethylococcus capsulatus(Bath)

artículo científico publicado en 2004

Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

artículo científico publicado en 2012

Quantitative analysis of protein phosphorylation on a system-wide scale by mass spectrometry-based proteomics

scientific article published on 01 March 2010

Quantitative in vitro kinase reaction as a guide for phosphoprotein analysis by mass spectrometry

artículo científico publicado en 2000

Quantitative interaction proteomics using mass spectrometry

artículo científico publicado en 2009

Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane

artículo científico publicado en 2004

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

artículo científico publicado en 2013

Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry

artículo científico publicado en 2005

Quantitative protein analysis by solid phase isotope tagging and mass spectrometry

artículo científico publicado en 2004

Quantitative protein profiling using two-dimensional gel electrophoresis, isotope-coded affinity tag labeling, and mass spectrometry

artículo científico publicado en 2002

Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry

artículo científico publicado en 2002

Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry

scientific article published on 01 January 2006

Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways

artículo científico publicado en 2003

Quantitative proteomic analysis of B cell lipid rafts reveals that ezrin regulates antigen receptor-mediated lipid raft dynamics

artículo científico publicado en 2006

Quantitative proteomic analysis of Myc oncoprotein function

artículo científico publicado en 2002

Quantitative proteomic analysis of chromatin-associated factors

scientific article published on 01 July 2003

Quantitative proteomic analysis of myc-induced apoptosis: a direct role for Myc induction of the mitochondrial chloride ion channel, mtCLIC/CLIC4

artículo científico publicado en 2006

Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation

artículo científico publicado en 2007

Quantitative proteomic analysis of the budding yeast cell cycle using acid-cleavable isotope-coded affinity tag reagents

article

Quantitative proteomic analysis to profile dynamic changes in the spatial distribution of cellular proteins

artículo científico publicado en 2008

Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer

artículo científico publicado en 2001

Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer

scientific journal article

Quantitative proteomic profiling of pancreatic cancer juice

artículo científico publicado en 2006

Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor-independent TCR signaling hub

scientific journal article

Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer

artículo científico publicado en 2007

Quantitative proteomics by stable isotope labeling and mass spectrometry

scientific article published on 01 January 2007

Quantitative proteomics investigation of pancreatic intraepithelial neoplasia

artículo científico publicado en 2009

Quantitative proteomics of microbes: Principles and applications to virulence ⬇️

artículo científico publicado el 4 de julio de 2011

Quantitative proteomics signature profiling based on network contextualization

artículo científico publicado en 2015

Quantitative proteomics: challenges and opportunities in basic and applied research

artículo científico

Quantitative variability of 342 plasma proteins in a human twin population

artículo científico publicado en 2015

Quantotypic properties of QconCAT peptides targeting bovine host response to Streptococcus uberis

artículo científico publicado en 2012

RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans

artículo científico publicado en 2012

RNA polymerase III subunit architecture and implications for open promoter complex formation ⬇️

artículo científico publicado el 6 de noviembre de 2012

RNF168 promotes noncanonical K27 ubiquitination to signal DNA damage.

artículo científico publicado en 2015

Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

artículo científico publicado en 2012

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

artículo científico publicado en 2015

Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells

Recent Workshops of the HUPO Human Plasma Proteome Project (HPPP): A bridge with the HUPO CardioVascular Initiative and the emergence of SRM targeted proteomics

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays

artículo científico publicado en 2016

Regulation of PKD by the MAPK p38delta in insulin secretion and glucose homeostasis

artículo científico publicado en 2009

Regulation of the meiosis-inhibited protein kinase, a p38(MAPK) isoform, during meiosis and following fertilization of seastar oocytes

artículo científico publicado en 2000

Regulation of yeast central metabolism by enzyme phosphorylation

artículo científico publicado en 2012

Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008)

artículo científico publicado en 2008

Reporting protein identification data: the next generation of guidelines.

artículo científico publicado en 2006

Reproducible Tissue Homogenization and Protein Extraction for Quantitative Proteomics Using MicroPestle-Assisted Pressure-Cycling Technology.

artículo científico publicado en 2016

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry

artículo científico publicado en 2015

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

artículo científico publicado en 2012

Reproducible quantitative proteotype data matrices for systems biology

artículo científico publicado en 2015

Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome Project

scientific article published on 15 September 2020

Review of Batch Effects Prevention, Diagnostics, and Correction Approaches

artículo científico publicado en 2020

Rewiring of genetic networks in response to DNA damage.

artículo científico publicado en 2010

Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome

artículo científico publicado en 2015

Role of tyrosine phosphorylation in the regulation of the interaction of heterogenous nuclear ribonucleoprotein K protein with its protein and RNA partners

artículo científico publicado en 2000

S6K1-mediated disassembly of mitochondrial URI/PP1gamma complexes activates a negative feedback program that counters S6K1 survival signaling

artículo científico publicado en 2007

SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles

artículo científico publicado en 2020

SPARC from olfactory ensheathing cells stimulates Schwann cells to promote neurite outgrowth and enhances spinal cord repair.

artículo científico publicado en 2007

SWATH-MS Analysis of FFPE Tissues Identifies Stathmin as a Potential Marker of Endometrial Cancer in Patients Exposed to Tamoxifen

artículo científico publicado en 2020

SWATH2stats: An R/Bioconductor Package to Process and Convert Quantitative SWATH-MS Proteomics Data for Downstream Analysis Tools

artículo científico publicado en 2016

Scoring proteomes with proteotypic peptide probes

artículo científico publicado en 2005

Selected reaction monitoring for quantitative proteomics: a tutorial

artículo científico publicado en 2008

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

artículo científico publicado en 2012

Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry

scientific article published on 11 April 2019

Separation of blood microsamples by exploiting sedimentation at the microscale

scientific article published on 20 September 2018

Ser(2194) is a highly conserved major phosphorylation site of the hepatitis C virus nonstructural protein NS5A.

artículo científico publicado en 2000

Serpin 2a is induced in activated macrophages and conjugates to a ubiquitin homolog

artículo científico publicado en 2002

Signal maps for mass spectrometry-based comparative proteomics

artículo científico publicado en 2005

Similarities and Differences of Blood N-Glycoproteins in Five Solid Carcinomas at Localized Clinical Stage Analyzed by SWATH-MS

artículo científico publicado en 2018

SnapShot: mass spectrometry for protein and proteome analyses

artículo científico publicado en 2013

Solid-phase extraction of N-linked glycopeptides

artículo científico publicado en 2007

Solid-phase protein sequence analysis

artículo científico publicado en 1990

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes

artículo científico publicado en 2014

Spectral library searching for peptide identification via tandem MS.

artículo científico publicado en 2010

Stabilizing variable selection and regression

artículo científico publicado en 2021

Standard guidelines for the chromosome-centric human proteome project

artículo científico publicado en 2012

Statistical approach to protein quantification

artículo científico publicado en 2013

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

artículo científico publicado en 2017

Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition

Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs ⬇️

artículo científico publicado el 5 de noviembre de 2012

Strategies to enable large-scale proteomics for reproducible research

scientific article published on 30 July 2020

Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics

artículo científico publicado en 2011

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

artículo científico publicado en 2012

Structural analysis of vascular endothelial growth factor receptor-2/ligand complexes by small-angle X-ray solution scattering.

artículo científico publicado en 2011

Structural and biochemical characterization of the Cop9 signalosome CSN5/CSN6 heterodimer

artículo científico publicado en 2014

Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle

artículo científico publicado en 2016

Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex.

artículo científico publicado en 2018

Structural features of Argonaute-GW182 protein interactions

artículo científico publicado en 2013

Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex

artículo científico publicado en 2017

Structure and subunit topology of the INO80 chromatin remodeler and its nucleosome complex.

artículo científico publicado en 2013

Structure of a human cap-dependent 48S translation pre-initiation complex

artículo científico publicado en 2018

Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution ⬇️

artículo científico publicado el 22 de noviembre de 2010

Structures of human PRC2 with its cofactors AEBP2 and JARID2.

artículo científico publicado en 2018

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

artículo científico publicado en 2007

Surfaceome of classical Hodgkin and non-Hodgkin lymphoma

artículo científico publicado en 2015

Synthesis and evaluation of superparamagnetic silica particles for extraction of glycopeptides in the microtiter plate format

artículo científico publicado en 2008

Synthesis of the protein-sequencing reagent 4-(3-pyridinylmethylaminocarboxypropyl) phenyl isothiocyanate and characterization of 4-(3-pyridinylmethylaminocarboxypropyl) phenylthiohydantoins

artículo científico publicado en 1995

System-Wide Quantitative Proteomics of the Metabolic Syndrome in Mice: Genotypic and Dietary Effects.

artículo científico publicado en 2016

System-based proteomic analysis of the interferon response in human liver cells

artículo científico publicado en 2004

Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics.

artículo científico publicado en 2017

Systematic LC-MS analysis of labile post-translational modifications in complex mixtures

artículo científico publicado en 2009

Systematic Proteomic Analysis Identifies β-Site Amyloid Precursor Protein Cleaving Enzyme 2 and 1 (BACE2 and BACE1) Substrates in Pancreatic β-Cells ⬇️

artículo científico publicado el 19 de febrero de 2013

Systematic characterization of pan-cancer mutation clusters.

artículo científico publicado en 2018

Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins

artículo científico publicado en 2013

Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.

artículo científico publicado en 2017

Systematic quantification of peptides/proteins in urine using selected reaction monitoring ⬇️

artículo científico publicado el 16 de febrero de 2011

Systems Pharmacology Dissection of Cholesterol Regulation Reveals Determinants of Large Pharmacodynamic Variability between Cell Lines

artículo científico publicado en 2017

Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer.

artículo científico publicado en 2018

Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis

artículo científico publicado en 2017

Systems proteomics of liver mitochondria function

artículo científico publicado en 2016

Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization

artículo científico publicado en 2016

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

artículo científico publicado en 2016

TRIM24 Is an Oncogenic Transcriptional Activator in Prostate Cancer

artículo científico publicado en 2016

Tandem mass spectrometry protein identification on a PC grid

artículo científico publicado en 2007

Target of Rapamycin Complex 2 Regulates Actin Polarization and Endocytosis via Multiple Pathways

artículo científico publicado en 2015

Targeted Proteomics

artículo científico publicado en 2012

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

artículo científico publicado en 2012

Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach

artículo científico publicado en 2014

Targeted protein quantification using sparse reference labeling

artículo científico publicado en 2014

Targeted proteome investigation via selected reaction monitoring mass spectrometry

artículo científico

Targeted proteomic strategy for clinical biomarker discovery

scientific article published on 11 December 2008

Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism

artículo científico publicado en 2012

Targeted proteomics reveals strain-specific changes in the mouse insulin and central metabolic pathways after a sustained high-fat diet

artículo científico publicado en 2013

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

artículo científico publicado en 2008

Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast

artículo científico publicado en 2013

The 2023 Report on the Proteome from the HUPO Human Proteome Project

artículo científico publicado en 2024

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

artículo científico publicado en 2013

The Chaperonin TRiC/CCT Associates with Prefoldin through a Conserved Electrostatic Interface Essential for Cellular Proteostasis

scientific article published on 04 April 2019

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.

artículo científico publicado en 2012

The Drosophila FoxA Ortholog Fork Head Regulates Growth and Gene Expression Downstream of Target of Rapamycin ⬇️

artículo científico publicado el 31 de diciembre de 2010

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

artículo científico publicado en 2009

The Evolving Contribution of Mass Spectrometry to Integrative Structural Biology

artículo científico publicado en 2016

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics

article

The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers

scientific article published on 07 January 2020

The HUPO initiative on Model Organism Proteomes, iMOP.

artículo científico publicado en 2012

The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays

artículo científico publicado en 2017

The MLL1 trimeric catalytic complex is a dynamic conformational ensemble stabilized by multiple weak interactions

scientific article published on 01 September 2019

The Mtb proteome library: A resource of assays to quantify the complete proteome of mycobacterium tuberculosis

artículo científico publicado en 2013

The PeptideAtlas project

artículo científico publicado en 2006

The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain

artículo científico publicado en 2020

The Protein Information and Property Explorer 2: Gaggle‐like exploration of biological proteomic data within one webpage ⬇️

artículo científico publicado el 6 de diciembre de 2010

The SysteMHC Atlas project

artículo científico publicado en 2017

The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses

artículo científico publicado en 2020

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT

artículo científico publicado en 2003

The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the applicatio

artículo científico publicado en 2003

The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community

artículo científico publicado en 2012

The calcineurin signaling network evolves via conserved kinase-phosphatase modules that transcend substrate identity

artículo científico publicado en 2014

The complete structure of the large subunit of the mammalian mitochondrial ribosome

artículo científico publicado en 2014

The direct recruitment of BLNK to immunoglobulin alpha couples the B-cell antigen receptor to distal signaling pathways

artículo científico publicado en 2002

The human proteome project: Current state and future direction

artículo científico

The impact of genomic variation on protein phosphorylation states and regulatory networks

artículo científico publicado en 2022

The implications of proteolytic background for shotgun proteomics

artículo científico publicado en 2007

The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification

scientific article published on 12 August 2019

The interdependence of transcript and protein abundance: new data--new complexities

artículo científico publicado en 2016

The laying hen expresses two different low density lipoprotein receptor-related proteins

artículo científico publicado en 1991

The minimum information about a proteomics experiment (MIAPE)

artículo científico publicado en 2007

The mitochondrial antioxidant defence system and its response to oxidative stress

artículo científico publicado en 2001

The molecular architecture of the eukaryotic chaperonin TRiC/CCT

artículo científico publicado en 2012

The mouse metallomic landscape of aging and metabolism

artículo científico publicado en 2022

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

artículo científico publicado en 2004

The need for national centers for proteomics

artículo científico publicado en 2002

The pros and cons of peptide-centric proteomics

artículo científico publicado en 2010

The protein interaction landscape of the human CMGC kinase group

artículo científico publicado en 2013

The quantitative and condition-dependent Escherichia coli proteome

artículo científico publicado en 2015

The quantitative proteome of a human cell line.

artículo científico publicado en 2011

The receptor for yolk lipoprotein deposition in the chicken oocyte

artículo científico publicado en 1991

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

artículo científico publicado en 2007

The structural basis of substrate recognition by the eukaryotic chaperonin TRiC/CCT

scientific journal article

The structure and symmetry of radial spoke protein complex in Chlamydomonas flagella

artículo científico publicado en 2020

The study of macromolecular complexes by quantitative proteomics

artículo científico publicado en 2003

The synaptojanin-like protein Inp53/Sjl3 functions with clathrin in a yeast TGN-to-endosome pathway distinct from the GGA protein-dependent pathway

artículo científico publicado en 2003

The toposome, essential for sea urchin cell adhesion and development, is a modified iron-less calcium-binding transferrin

artículo científico publicado en 2007

The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes

artículo científico publicado en 2007

The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI).

artículo científico publicado en 2006

Timescales and bottlenecks in miRNA-dependent gene regulation

scientific article published on 03 December 2013

Toward a high-throughput approach to quantitative proteomic analysis: expression-dependent protein identification by mass spectrometry

artículo científico publicado en 2001

TraML--a standard format for exchange of selected reaction monitoring transition lists

artículo científico

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets

artículo científico publicado en 2010

Two-dimensional Blue native/SDS gel electrophoresis of multi-protein complexes from whole cellular lysates: a proteomics approach

artículo científico publicado en 2003

Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

artículo científico publicado en 2009

Ultra-sensitive proteome profiling of FACS-isolated cell populations by data-independent acquisition-MS: Application to human hematopoietic stem and progenitor cells

artículo científico publicado en 2018

UniPep--a database for human N-linked glycosites: a resource for biomarker discovery

artículo científico publicado en 2006

Unique structural features and differential phosphorylation of the 280-kDa component (isozyme) of rat liver acetyl-CoA carboxylase

artículo científico publicado en 1994

Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97.

artículo científico publicado en 2017

Updated reference genome sequence and annotation ofMycobacterium bovisAF2122/97

Using data-independent, high-resolution mass spectrometry in protein biomarker research: perspectives and clinical applications

artículo científico publicado en 2015

Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data

artículo científico publicado en 2010

Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition

artículo científico publicado en 2007

Using synthetic peptides to benchmark peptide identification software and search parameters for MS/MS data analysis

artículo científico publicado en 2014

Using the Human Plasma PeptideAtlas to Study Human Plasma Proteins ⬇️

artículo científico publicado el 1 de enero de 2011

Visual proteomics of the human pathogen Leptospira interrogans

artículo científico publicado en 2009

Western Blots versus Selected Reaction Monitoring Assays: Time to Turn the Tables? ⬇️

artículo científico publicado el 10 de junio de 2013

Xwalk: computing and visualizing distances in cross-linking experiments

artículo científico publicado en 2011

Yeast endosulfines control entry into quiescence and chronological life span by inhibiting protein phosphatase 2A

scientific journal article

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data

artículo científico publicado en 2014

diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

artículo científico publicado en 2020

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

artículo científico publicado en 2011

mProphet: automated data processing and statistical validation for large-scale SRM experiments

artículo científico publicado en 2011

mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets

artículo científico publicado en 2014

openBIS: a flexible framework for managing and analyzing complex data in biology research

artículo científico publicado en 2011

pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library

artículo científico

qcML: an exchange format for quality control metrics from mass spectrometry experiments

artículo científico

xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry

artículo científico publicado en 2015

Lista de obras de Ruedi Aebersold

7(th) HUPO World Congress of Proteomics: launching the second phase of the HUPOPlasma Proteome Project (PPP-2) 16-20 August 2008, Amsterdam, The Netherlands.

A Bovine PeptideAtlas of milk and mammary gland proteomes ⬇️

A Candida albicans PeptideAtlas

A Case for a Human Immuno-Peptidome Project Consortium

A Class of Environmental and Endogenous Toxins Induces BRCA2 Haploinsufficiency and Genome Instability.

A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

A Conserved Mito-Cytosolic Translational Balance Links Two Longevity Pathways

A DNA-damage selective role for BRCA1 E3 ligase in claspin ubiquitylation, CHK1 activation, and DNA repair.

A G protein gamma subunit shares homology with ras proteins.

A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS

A High-Density Map for Navigating the Human Polycomb Complexome

A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein

A Proteomic Connectivity Map.

A Simplified Gradient Solvent Delivery System for Capillary Liquid Chromatography–Electrospray Ionization Mass Spectrometry

A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer

A Web Resource for Improved Analysis of AP-MS Protein Interaction Data

A cellular gene encodes scrapie PrP 27-30 protein

A common open representation of mass spectrometry data and its application to proteomics research

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

A comprehensive characterization of the T-cell antigen receptor complex composition by microcapillary liquid chromatography-tandem mass spectrometry

A computational tool to detect and avoid redundancy in selected reaction monitoring

A curated collection of tissue microarray images and clinical outcome data of prostate cancer patients

A database of mass spectrometric assays for the yeast proteome

A dataset of human liver proteins identified by protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry

A first dataset toward a standardized community-driven global mapping of the human immunopeptidome

A guided tour of the Trans-Proteomic Pipeline

A high density map for navigating the human Polycomb complexome

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

A high-quality catalog of the Drosophila melanogaster proteome

A high-stringency blueprint of the human proteome

A human proteome detection and quantitation project

A mass spectrometric journey into protein and proteome research

A mass spectrometric-derived cell surface protein atlas

A mass spectrometry-based approach for probing enzyme active sites: identification of Glu 127 in Cellulomonas fimi exoglycanase as the residue modified by N-bromoacetyl cellobiosylamine

A mass spectrometry-based hybrid method for structural modeling of protein complexes

A microcapillary trap cartridge-microcapillary high-performance liquid chromatography electrospray ionization emitter device capable of peptide tandem mass spectrometry at the attomole level on an ion trap mass spectrometer with automated routine op

A mouse plasma peptide atlas as a resource for disease proteomics

A multicenter study benchmarks software tools for label-free proteome quantification

A new class of protein biomarkers based on subcellular distribution: application to a mouse liver cancer model

A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A

A novel, evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity

A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics

A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

A serum protein profile predictive of the resistance to neoadjuvant chemotherapy in advanced breast cancers

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

A statistical method for chromatographic alignment of LC-MS data

A statistical model for identifying proteins by tandem mass spectrometry

A stress test for mass spectrometry-based proteomics

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

A systematic approach to the analysis of protein phosphorylation

A tissue-based draft map of the murine MHC class I immunopeptidome

A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

A web site for the rat serum protein study group

AP-SWATH reveals direct involvement of VCP/p97 in integrated stress response signaling through facilitating CReP/PPP1R15B degradation

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry ⬇️

ATM-Dependent and -Independent Dynamics of the Nuclear Phosphoproteome After DNA Damage ⬇️

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags

Absolute quantification of specific proteins in complex mixtures using visible isotope-coded affinity tags

Absolute quantitation of 2-D protein spots

Abundance ratio-dependent proteomic analysis by mass spectrometry

Accelerated Protein Biomarker Discovery from FFPE Tissue Samples Using Single-Shot, Short Gradient Microflow SWATH MS

Activation and serine phosphorylation of the p56lck protein tyrosine kinase in response to antigen receptor cross-linking in B lymphocytes

Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus.

Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides

Advances in protein complex analysis using mass spectrometry

Advances in proteome analysis by mass spectrometry

Advances in proteomic workflows for systems biology

Advances in quantitative proteomics using stable isotope tags

Advances in quantitative proteomics via stable isotope tagging and mass spectrometry

Advancing cell biology through proteomics in space and time (PROSPECTS).

Advancing translational research and precision medicine with targeted proteomics

An Integrated Microfluidics-Tandem Mass Spectrometry System for Automated Protein Analysis ⬇️

An SMC-domain protein in fission yeast links telomeres to the meiotic centrosome

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

An automated pipeline for high-throughput label-free quantitative proteomics