Lista de obras - Richard H. Ebright - Dominio Público Uruguay

A single substitution in the putative helix-turn-helix motif of the pleiotropic activator PrfA attenuates Listeria monocytogenes virulence

artículo científico publicado en 1996

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

artículo científico publicado en 2006

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

artículo científico publicado en 2005

Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel

artículo científico publicado en 2004

Aromatic hydrogen bond in sequence-specific protein DNA recognition

artículo científico publicado en 1996

Bacterial RNA polymerase subunit and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly

artículo científico publicado en 2001

Catabolite activator protein: DNA binding and transcription activation

artículo científico publicado en 2004

Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). II. Role at Class I and class II CAP-dependent promoters.

artículo científico publicado en 1994

Closing and opening of the RNA polymerase trigger loop

artículo científico publicado en 2020

Corrected nucleotide sequence of M13mp18 gene III

article

Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters

artículo científico publicado en 2002

Direct detection of abortive RNA transcripts in vivo

artículo científico publicado en 2009

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

artículo científico publicado en 2005

Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability

artículo científico publicado en 2004

Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

artículo científico publicado en 1994

Dynamically driven protein allostery.

artículo científico publicado en 2006

Fluorescence anisotropy: rapid, quantitative assay for protein-DNA and protein-protein interaction.

artículo científico publicado en 1996

Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription

artículo científico publicado en 2003

Highly efficient 5' capping of mitochondrial RNA with NAD and NADH by yeast and human mitochondrial RNA polymerase

artículo científico publicado en 2018

Identification of the Subunit of cAMP Receptor Protein (CRP) That Functionally Interacts with CytR in CRP-CytR-mediated Transcriptional Repression

scientific article published in Journal of Biological Chemistry

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps

artículo científico publicado en 2006

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

artículo científico publicado en 2005

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

artículo científico publicado en 2006

Mutational analysis of a transcriptional activation region of the VP16 protein of herpes simplex virus

artículo científico publicado en 1998

New target for inhibition of bacterial RNA polymerase: 'switch region'

artículo científico publicado en 2011

Opening and closing of the bacterial RNA polymerase clamp

artículo científico publicado en 2012

Orientation of OmpR monomers within an OmpR:DNA complex determined by DNA affinity cleaving 1 1Edited by K. Yamamoto

artículo científico publicado en 1999

Pause sequences facilitate entry into long-lived paused states by reducing RNA polymerase transcription rates

scientific article published in Nature Communications

Phenyl-azide-mediated photocrosslinking analysis of Cro-DNA interaction.

artículo científico publicado en 1993

Promoter structure, promoter recognition, and transcription activation in prokaryotes.

artículo científico publicado en 1994

Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

scholarly article

Protein-protein interactions in eukaryotic transcription initiation: structure of the preinitiation complex

artículo científico publicado en 1996

RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription

scientific article published on 03 March 2020

Rapid RNA polymerase genetics: one-day, no-column preparation of reconstituted recombinant Escherichia coli RNA polymerase.

artículo científico publicado en 1995

Requirement for two copies of RNA polymerase alpha subunit C-terminal domain for synergistic transcription activation at complex bacterial promoters

artículo científico publicado en 2002

Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA.

artículo científico publicado en 2005

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

artículo científico publicado en 2005

Roles of the histone H2A-H2B dimers and the (H3-H4)(2) tetramer in nucleosome remodeling by the SWI-SNF complex

artículo científico publicado en 2000

Single-molecule DNA nanomanipulation: detection of promoter-unwinding events by RNA polymerase

scientific article published on 01 January 2003

Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments.

artículo científico publicado en 2005

Static and kinetic site-specific protein-DNA photocrosslinking: analysis of bacterial transcription initiation complexes

artículo científico publicado en 2009

Structural basis for cAMP-mediated allosteric control of the catabolite activator protein.

artículo científico publicado en 2009

Structural basis of ECF-σ-factor-dependent transcription initiation

artículo científico publicado en 2019

Structural basis of Q-dependent antitermination

scientific article published on 27 August 2019

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

artículo científico publicado en 2002

Structural basis of transcription initiation

artículo científico publicado en 2012

Structural basis of transcription-translation coupling

artículo científico publicado en 2020

Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot

artículo científico publicado en 2003

Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface

artículo científico publicado en 1996

Structure of the LexA repressor-DNA complex probed by affinity cleavage and affinity photo-cross-linking.

artículo científico publicado en 1996

Structures of RNA polymerase-antibiotic complexes

artículo científico publicado en 2009

Systematic structure-activity analysis of microcin J25.

artículo científico publicado en 2008

The Escherichia coli RNA polymerase alpha subunit: structure and function

artículo científico publicado en 1995

The RNA polymerase "switch region" is a target for inhibitors

artículo científico publicado en 2008

The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase.

artículo científico publicado en 2011

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

artículo científico publicado en 2011

The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation

artículo científico publicado en 2005

The mechanism of variability in transcription start site selection

artículo científico publicado en 2017

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

artículo científico publicado en 2004

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

artículo científico publicado en 2012

Thermodynamic and kinetic modeling of transcriptional pausing

artículo científico publicado en 2006

Trajectory of DNA in the RNA polymerase II transcription preinitiation complex ⬇️

artículo científico publicado el 11 de noviembre de 1997

Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase alpha subunit.

artículo científico publicado en 1998

Transcription activation by catabolite activator protein (CAP)

artículo científico publicado en 1999

Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex

artículo científico publicado en 2003

Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex

artículo científico publicado en 2007

Lista de obras de Richard H. Ebright

A single substitution in the putative helix-turn-helix motif of the pleiotropic activator PrfA attenuates Listeria monocytogenes virulence

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel

Aromatic hydrogen bond in sequence-specific protein DNA recognition

Bacterial RNA polymerase subunit and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly

Catabolite activator protein: DNA binding and transcription activation

Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). II. Role at Class I and class II CAP-dependent promoters.

Closing and opening of the RNA polymerase trigger loop

Corrected nucleotide sequence of M13mp18 gene III

Determinants of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit important for transcription at class I cyclic AMP receptor protein-dependent promoters

Direct detection of abortive RNA transcripts in vivo

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability

Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding.

Dynamically driven protein allostery.

Fluorescence anisotropy: rapid, quantitative assay for protein-DNA and protein-protein interaction.

Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription

Highly efficient 5' capping of mitochondrial RNA with NAD and NADH by yeast and human mitochondrial RNA polymerase

Identification of the Subunit of cAMP Receptor Protein (CRP) That Functionally Interacts with CytR in CRP-CytR-mediated Transcriptional Repression

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

Mutational analysis of a transcriptional activation region of the VP16 protein of herpes simplex virus

New target for inhibition of bacterial RNA polymerase: 'switch region'

Opening and closing of the bacterial RNA polymerase clamp

Orientation of OmpR monomers within an OmpR:DNA complex determined by DNA affinity cleaving 1 1Edited by K. Yamamoto

Pause sequences facilitate entry into long-lived paused states by reducing RNA polymerase transcription rates

Phenyl-azide-mediated photocrosslinking analysis of Cro-DNA interaction.

Promoter structure, promoter recognition, and transcription activation in prokaryotes.

Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

Protein-protein interactions in eukaryotic transcription initiation: structure of the preinitiation complex

RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription

Rapid RNA polymerase genetics: one-day, no-column preparation of reconstituted recombinant Escherichia coli RNA polymerase.

Requirement for two copies of RNA polymerase alpha subunit C-terminal domain for synergistic transcription activation at complex bacterial promoters

Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA.

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

Roles of the histone H2A-H2B dimers and the (H3-H4)(2) tetramer in nucleosome remodeling by the SWI-SNF complex

Single-molecule DNA nanomanipulation: detection of promoter-unwinding events by RNA polymerase

Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments.

Static and kinetic site-specific protein-DNA photocrosslinking: analysis of bacterial transcription initiation complexes

Structural basis for cAMP-mediated allosteric control of the catabolite activator protein.

Structural basis of ECF-σ-factor-dependent transcription initiation

Structural basis of Q-dependent antitermination

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

Structural basis of transcription initiation

Structural basis of transcription-translation coupling

Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot

Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface

Structure of the LexA repressor-DNA complex probed by affinity cleavage and affinity photo-cross-linking.

Structures of RNA polymerase-antibiotic complexes

Systematic structure-activity analysis of microcin J25.

The Escherichia coli RNA polymerase alpha subunit: structure and function

The RNA polymerase "switch region" is a target for inhibitors

The antibacterial threaded-lasso peptide capistruin inhibits bacterial RNA polymerase.

The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation

The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation

The mechanism of variability in transcription start site selection

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection

Thermodynamic and kinetic modeling of transcriptional pausing

Trajectory of DNA in the RNA polymerase II transcription preinitiation complex ⬇️

Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase alpha subunit.

Transcription activation by catabolite activator protein (CAP)

Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex

Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex