Lista de obras -

A face in the crowd: recognizing peptides through database search

artículo científico publicado en 2011

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.

artículo científico publicado en 2011

Addendum: A breast cancer stem cell niche supported by juxtacrine signalling from monocytes and macrophages

artículo científico publicado en 2015

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

artículo científico publicado en 2015

An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling

artículo científico publicado en 2017

Antibodies to biotin enable large-scale detection of biotinylation sites on proteins

artículo científico publicado en 2017

Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy

artículo científico publicado en 2008

Cdk5 is required for memory function and hippocampal plasticity via the cAMP signaling pathway.

artículo científico publicado en 2011

Clawing through evolution: toxin diversification and convergence in the ancient lineage Chilopoda (centipedes)

artículo científico publicado en 2014

Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast.

artículo científico publicado en 2017

Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.

artículo científico publicado en 2017

De novo peptide sequencing via manual interpretation of MS/MS spectra

artículo científico publicado en 2002

Evaluation of advanced precursor determination for tandem mass tag (TMT)-based quantitative proteomics across instrument platforms

article

Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters

scientific article published on 11 March 2014

Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.

artículo científico publicado en 2014

Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

artículo científico

Identification of constitutive and gamma-interferon- and interleukin 4-regulated proteins in the human renal carcinoma cell line ACHN.

artículo científico publicado en 1997

Integrated proteomic analysis of post-translational modifications by serial enrichment.

scientific article published on 09 June 2013

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

artículo científico publicado en 2009

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

artículo científico publicado en 2014

Mass spectrometry-based proteomics reveals potential roles of NEK9 and MAP2K4 in resistance to PI3K inhibitors in triple negative breast cancers.

artículo científico publicado en 2018

MatrisomeDB: the ECM-protein knowledge database

artículo científico publicado en 2020

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. ⬇️

artículo científico publicado en 2012

Methods, Tools and Current Perspectives in Proteogenomics

artículo científico publicado en 2017

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

artículo científico publicado en 2015

Modification site localization scoring: strategies and performance

artículo científico publicado en 2012

Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.

artículo científico publicado en 2015

Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells

artículo científico publicado en 2009

Proteogenomic integration reveals therapeutic targets in breast cancer xenografts

artículo científico publicado en 2017

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

artículo científico publicado en 2013

Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells

scientific article published on 04 September 2019

Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.

artículo científico publicado en 2017

Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate.

artículo científico publicado en 2007

Proteomics Standards Initiative Extended FASTA Format

artículo científico publicado en 2019

Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups

scientific article published on 01 September 2018

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.

scientific article published on 10 January 2017

Quantitative, multiplexed workflow for deep analysis of human blood plasma and biomarker discovery by mass spectrometry.

artículo científico publicado en 2017

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

artículo científico publicado en 2015

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry

scientific article published on 01 July 2018

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

artículo científico publicado en 1999

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

artículo científico publicado en 2020

Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides

artículo científico publicado en 1996

Shotgun protein sequencing: assembly of peptide tandem mass spectra from mixtures of modified proteins.

artículo científico publicado en 2007

Site-specific identification and quantitation of endogenous SUMO modifications under native conditions.

artículo científico publicado en 2017

Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells

scientific article published on 21 February 2019

Systematic discovery of TLR signaling components delineates viral-sensing circuits

artículo científico publicado en 2011

TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach

artículo científico publicado en 2019

The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices

artículo científico publicado en 2011

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

artículo científico publicado en 2020

Use of mass spectrometry to identify protein biomarkers of disease severity in the synovial fluid and serum of patients with rheumatoid arthritis

artículo científico publicado en 2004

Valosin-containing protein phosphorylation at Ser784 in response to DNA damage

artículo científico publicado en 2005

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture.

artículo científico publicado en 2012

Lista de obras de

A face in the crowd: recognizing peptides through database search

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.

Addendum: A breast cancer stem cell niche supported by juxtacrine signalling from monocytes and macrophages

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

An Integrative Framework Reveals Signaling-to-Transcription Events in Toll-like Receptor Signaling

Antibodies to biotin enable large-scale detection of biotinylation sites on proteins

Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy

Cdk5 is required for memory function and hippocampal plasticity via the cAMP signaling pathway.

Clawing through evolution: toxin diversification and convergence in the ancient lineage Chilopoda (centipedes)

Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast.

Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.

De novo peptide sequencing via manual interpretation of MS/MS spectra

Evaluation of advanced precursor determination for tandem mass tag (TMT)-based quantitative proteomics across instrument platforms

Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters

Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.

Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

Identification of constitutive and gamma-interferon- and interleukin 4-regulated proteins in the human renal carcinoma cell line ACHN.

Integrated proteomic analysis of post-translational modifications by serial enrichment.

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

Mass spectrometry-based proteomics reveals potential roles of NEK9 and MAP2K4 in resistance to PI3K inhibitors in triple negative breast cancers.

MatrisomeDB: the ECM-protein knowledge database

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. ⬇️

Methods, Tools and Current Perspectives in Proteogenomics

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

Modification site localization scoring: strategies and performance

Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.

Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells

Proteogenomic integration reveals therapeutic targets in breast cancer xenografts

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells

Proteomic characterization of human multiple myeloma bone marrow extracellular matrix.

Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate.

Proteomics Standards Initiative Extended FASTA Format

Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.

Quantitative, multiplexed workflow for deep analysis of human blood plasma and biomarker discovery by mass spectrometry.

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides

Shotgun protein sequencing: assembly of peptide tandem mass spectra from mixtures of modified proteins.

Site-specific identification and quantitation of endogenous SUMO modifications under native conditions.

Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells

Systematic discovery of TLR signaling components delineates viral-sensing circuits

TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach

The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

Use of mass spectrometry to identify protein biomarkers of disease severity in the synovial fluid and serum of patients with rheumatoid arthritis

Valosin-containing protein phosphorylation at Ser784 in response to DNA damage

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture.