Lista de obras -

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

artículo científico publicado en 2010

A unique covalent bond in basement membrane is a primordial innovation for tissue evolution.

artículo científico publicado en 2013

Alteration of the Helicobacter pylori membrane proteome in response to changes in environmental salt concentration.

artículo científico publicado en 2015

Analysis of surface-exposed outer membrane proteins in Helicobacter pylori.

artículo científico publicado en 2014

Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing

artículo científico publicado en 2016

Assigning function to yeast proteins by integration of technologies.

artículo científico publicado en 2003

Automatic quality assessment of peptide tandem mass spectra.

artículo científico publicado en 2004

Binding of the Covalent Flavin Assembly Factor to the Flavoprotein Subunit of Complex II.

artículo científico publicado en 2015

Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics

artículo científico publicado en 2011

Charting the protein complexome in yeast by mass spectrometry.

artículo científico publicado en 2002

Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.

artículo científico publicado en 2002

Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.

artículo científico publicado en 2006

Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.

artículo científico publicado en 2006

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

artículo científico publicado en 2002

Dual-tagging system for the affinity purification of mammalian protein complexes.

artículo científico publicado en 2007

Dynamics of the peroxisomal import cycle of PpPex20p: ubiquitin-dependent localization and regulation.

artículo científico publicado en 2006

Geometric Restraint Drives On- and Off-pathway Catalysis by the Escherichia coli Menaquinol:Fumarate Reductase ⬇️

artículo científico publicado en 2011

Global phosphotyrosine proteomics identifies PKCδ as a marker of responsiveness to Src inhibition in colorectal cancer

artículo científico publicado en 2013

Glucose autoxidation induces functional damage to proteins via modification of critical arginine residues

artículo científico publicado en 2011

Growth phase-dependent composition of the Helicobacter pylori exoproteome.

artículo científico publicado en 2015

Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface

artículo científico publicado en 2011

Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

scientific article published on 18 September 2013

Iron Toxicity in the Retina Requires Alu RNA and the NLRP3 Inflammasome

artículo científico publicado en 2015

LMO2 Oncoprotein Stability in T-Cell Leukemia Requires Direct LDB1 Binding

artículo científico publicado en 2015

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

artículo científico

MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.

artículo científico publicado en 2005

Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

artículo científico publicado en 2009

Molecular and Structural Analysis of the Helicobacter pylori cag Type IV Secretion System Core Complex.

artículo científico publicado en 2016

Mus81-Eme1 are essential components of a Holliday junction resolvase

artículo científico publicado en 2001

Myb-related fission yeast cdc5p is a component of a 40S snRNP-containing complex and is essential for pre-mRNA splicing.

artículo científico publicado en 1999

Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex.

artículo científico publicado en 2003

Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis.

scientific article published on 25 August 2004

Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones.

artículo científico publicado en 2012

P-REX1 creates a positive feedback loop to activate growth factor receptor, PI3K/AKT and MEK/ERK signaling in breast cancer.

artículo científico publicado en 2014

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

artículo científico publicado en 2006

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

artículo científico publicado en 2006

Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor alpha structure and function.

artículo científico publicado en 2006

Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain.

artículo científico publicado en 2004

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

artículo científico publicado en 2013

Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

artículo científico publicado en 2003

Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

artículo científico publicado en 2002

RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress.

artículo científico publicado en 2003

Replication checkpoint kinase Cds1 regulates recombinational repair protein Rad60.

artículo científico publicado en 2003

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

artículo científico publicado en 2006

Sepp1(UF) forms are N-terminal selenoprotein P truncations that have peroxidase activity when coupled with thioredoxin reductase-1

artículo científico publicado en 2014

Short forms of Ste20-related proline/alanine-rich kinase (SPAK) in the kidney are created by aspartyl aminopeptidase (Dnpep)-mediated proteolytic cleavage

artículo científico publicado en 2014

Shotgun proteomics and biomarker discovery.

artículo científico publicado en 2002

Shotgun proteomics: identification of unique protein profiles of apoptotic bodies from biliary epithelial cells

artículo científico publicado en 2014

Shotgun proteomics: integrating technologies to answer biological questions.

artículo científico publicado en 2003

Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.

artículo científico publicado en 2003

Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1.

artículo científico publicado en 2013

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

artículo científico publicado en 2007

Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.

artículo científico publicado en 2004

Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity.

artículo científico publicado en 2005

The Clp1/Cdc14 phosphatase contributes to the robustness of cytokinesis by association with anillin-related Mid1.

artículo científico publicado en 2008

The Nse5-Nse6 Dimer Mediates DNA Repair Roles of the Smc5-Smc6 Complex.

artículo científico publicado en 2006

The SBF- and MBF-associated protein Msa1 is required for proper timing of G1-specific transcription in Saccharomyces cerevisiae.

artículo científico publicado en 2008

The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.

artículo científico publicado en 2012

The novel chemical entity YTR107 inhibits recruitment of nucleophosmin to sites of DNA damage, suppressing repair of DNA double-strand breaks and enhancing radiosensitization

artículo científico publicado en 2011

Use of high specific activity StarFire oligonucleotide probes to visualize low-abundance pre-mRNA splicing intermediates in S. pombe.

artículo científico

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture.

artículo científico publicado en 2012

Lista de obras de

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

A unique covalent bond in basement membrane is a primordial innovation for tissue evolution.

Alteration of the Helicobacter pylori membrane proteome in response to changes in environmental salt concentration.

Analysis of surface-exposed outer membrane proteins in Helicobacter pylori.

Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing

Assigning function to yeast proteins by integration of technologies.

Automatic quality assessment of peptide tandem mass spectra.

Binding of the Covalent Flavin Assembly Factor to the Flavoprotein Subunit of Complex II.

Characterization of the MDSC proteome associated with metastatic murine mammary tumors using label-free mass spectrometry and shotgun proteomics

Charting the protein complexome in yeast by mass spectrometry.

Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.

Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.

Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

Dual-tagging system for the affinity purification of mammalian protein complexes.

Dynamics of the peroxisomal import cycle of PpPex20p: ubiquitin-dependent localization and regulation.

Geometric Restraint Drives On- and Off-pathway Catalysis by the Escherichia coli Menaquinol:Fumarate Reductase ⬇️

Global phosphotyrosine proteomics identifies PKCδ as a marker of responsiveness to Src inhibition in colorectal cancer

Glucose autoxidation induces functional damage to proteins via modification of critical arginine residues

Growth phase-dependent composition of the Helicobacter pylori exoproteome.

Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface

Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

Iron Toxicity in the Retina Requires Alu RNA and the NLRP3 Inflammasome

LMO2 Oncoprotein Stability in T-Cell Leukemia Requires Direct LDB1 Binding

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.

Modulation of the structure, catalytic activity, and fidelity of African swine fever virus DNA polymerase X by a reversible disulfide switch.

Molecular and Structural Analysis of the Helicobacter pylori cag Type IV Secretion System Core Complex.

Mus81-Eme1 are essential components of a Holliday junction resolvase

Myb-related fission yeast cdc5p is a component of a 40S snRNP-containing complex and is essential for pre-mRNA splicing.

Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex.

Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis.

Obesity and altered glucose metabolism impact HDL composition in CETP transgenic mice: a role for ovarian hormones.

P-REX1 creates a positive feedback loop to activate growth factor receptor, PI3K/AKT and MEK/ERK signaling in breast cancer.

Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor alpha structure and function.

Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain.

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress.

Replication checkpoint kinase Cds1 regulates recombinational repair protein Rad60.

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

Sepp1(UF) forms are N-terminal selenoprotein P truncations that have peroxidase activity when coupled with thioredoxin reductase-1

Short forms of Ste20-related proline/alanine-rich kinase (SPAK) in the kidney are created by aspartyl aminopeptidase (Dnpep)-mediated proteolytic cleavage

Shotgun proteomics and biomarker discovery.

Shotgun proteomics: identification of unique protein profiles of apoptotic bodies from biliary epithelial cells

Shotgun proteomics: integrating technologies to answer biological questions.

Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.

Staphylococcus aureus LukAB cytotoxin kills human neutrophils by targeting the CD11b subunit of the integrin Mac-1.

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.

Tea4p links microtubule plus ends with the formin for3p in the establishment of cell polarity.

The Clp1/Cdc14 phosphatase contributes to the robustness of cytokinesis by association with anillin-related Mid1.

The Nse5-Nse6 Dimer Mediates DNA Repair Roles of the Smc5-Smc6 Complex.

The SBF- and MBF-associated protein Msa1 is required for proper timing of G1-specific transcription in Saccharomyces cerevisiae.

The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.

The novel chemical entity YTR107 inhibits recruitment of nucleophosmin to sites of DNA damage, suppressing repair of DNA double-strand breaks and enhancing radiosensitization

Use of high specific activity StarFire oligonucleotide probes to visualize low-abundance pre-mRNA splicing intermediates in S. pombe.

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

iPRG 2012 Study: Detecting Modified Peptides in a Complex Mixture.