Lista de obras - C Venclovas - Dominio Público Uruguay

A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems

artículo científico publicado en 2017

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

artículo científico publicado en 1999

Addressing the issue of sequence-to-structure alignments in comparative modeling of CASP3 target proteins.

artículo científico publicado en 1999

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

CAD-score: a new contact area difference-based function for evaluation of protein structural models.

artículo científico publicado en 2012

COMA server for protein distant homology search

artículo científico publicado en 2010

Codon-anticodon pairing. A model for interacting codon-anticodon duplexes located at the ribosomal A- and P-sites

artículo científico publicado el 23 de noviembre de 1992

Comparative analysis of methods for evaluation of protein models against native structures

artículo científico publicado en 2019

Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment.

artículo científico publicado en 2001

Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes

artículo científico publicado en 2013

Conformational analysis of processivity clamps in solution demonstrates that tertiary structure does not correlate with protein dynamics

artículo científico publicado en 2014

Criteria for evaluating protein structures derived from comparative modeling ⬇️

artículo científico publicado el 1 de enero de 1997

Different enzymes with similar structures involved in Mg(2+)-mediated polynucleotidyl transfer

artículo científico publicado en 1995

DnaQ exonuclease-like domain of Cas2 promotes spacer integration in a type I-E CRISPR-Cas system

artículo científico publicado en 2018

Estimation of model accuracy in CASP13

artículo científico publicado en 2019

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

artículo científico publicado en 2019

Five-stranded beta-sheet sandwiched with two alpha-helices: a structural link between restriction endonucleases EcoRI and EcoRV

scientific article published on 01 November 1994

Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins.

artículo científico publicado en 2015

Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains

artículo científico publicado en 2007

HhaI DNA methyltransferase uses the protruding Gln237 for active flipping of its target cytosine.

artículo científico publicado en 2004

How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography.

artículo científico publicado en 1992

Human HLTF mediates postreplication repair by its HIRAN domain-dependent replication fork remodelling.

artículo científico publicado en 2015

Modeling SARS-CoV-2 proteins in the CASP-commons experiment

Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection.

artículo científico publicado en 2017

Molecular modeling-based analysis of interactions in the RFC-dependent clamp-loading process

artículo científico publicado en 2002

NR5A1 c.991-1G > C splice-site variant causes familial 46,XY partial gonadal dysgenesis with incomplete penetrance

scientific article published on 09 December 2020

New insights into the structures and interactions of bacterial Y-family DNA polymerases

scientific article published on 01 May 2019

Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea.

artículo científico publicado en 2017

Numerical criteria for the evaluation of ab initio predictions of protein structure.

artículo científico publicado en 1997

PPI3D: a web server for searching, analyzing and modeling protein–protein, protein–peptide and protein–nucleic acid interactions

artículo científico publicado en 2024

Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus.

artículo científico publicado en 2014

Ribosomal stalk-captured CARF-RelE ribonuclease inhibits translation following CRISPR signaling

artículo científico publicado en 2023

Some measures of comparative performance in the three CASPs.

artículo científico publicado en 1999

Spatiotemporal Control of Type III-A CRISPR-Cas Immunity: Coupling DNA Degradation with the Target RNA Recognition.

artículo científico publicado en 2016

Structural modeling of protein complexes: Current capabilities and challenges

artículo científico publicado en 2019

Structure of Csm2 elucidates the relationship between small subunits of CRISPR-Cas effector complexes.

artículo científico publicado en 2016

Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site

scientific article published on 01 September 2000

Template-based modeling of diverse protein interactions in CAPRI rounds 38-45

scientific article published on 07 November 2019

The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes.

artículo científico publicado en 2014

The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor.

artículo científico publicado en 2018

The N-terminal region of the bacterial DNA polymerase PolC features a pair of domains, both distantly related to domain V of the DNA polymerase III τ subunit.

artículo científico publicado en 2011

The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures.

artículo científico publicado en 2016

The cytolytic activity of vaginolysin strictly depends on cholesterol and is potentiated by human CD59.

artículo científico publicado en 2015

The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes

artículo científico publicado en 2016

The path of a protein chain can be approximated by the conformation dictated by interpeptide ionic bridges

artículo científico publicado el 4 de mayo de 1992

The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures

artículo científico publicado en 2014

Type III CRISPR-Cas Immunity: Major Differences Brushed Aside

artículo científico publicado en 2016

Viral DNA replication: new insights and discoveries from large scale computational analysis

VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes

scientific article published on 01 July 2019

VoroMQA: Assessment of protein structure quality using interatomic contact areas.

artículo científico publicado en 2017

Voronota: A fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls.

artículo científico publicado en 2014

Lista de obras de C Venclovas

A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

Addressing the issue of sequence-to-structure alignments in comparative modeling of CASP3 target proteins.

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

CAD-score: a new contact area difference-based function for evaluation of protein structural models.

COMA server for protein distant homology search

Codon-anticodon pairing. A model for interacting codon-anticodon duplexes located at the ribosomal A- and P-sites

Comparative analysis of methods for evaluation of protein models against native structures

Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment.

Comprehensive analysis of DNA polymerase III α subunits and their homologs in bacterial genomes

Conformational analysis of processivity clamps in solution demonstrates that tertiary structure does not correlate with protein dynamics

Criteria for evaluating protein structures derived from comparative modeling ⬇️

Different enzymes with similar structures involved in Mg(2+)-mediated polynucleotidyl transfer

DnaQ exonuclease-like domain of Cas2 promotes spacer integration in a type I-E CRISPR-Cas system

Estimation of model accuracy in CASP13

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants

Five-stranded beta-sheet sandwiched with two alpha-helices: a structural link between restriction endonucleases EcoRI and EcoRV

Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins.

Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains

HhaI DNA methyltransferase uses the protruding Gln237 for active flipping of its target cytosine.

How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography.

Human HLTF mediates postreplication repair by its HIRAN domain-dependent replication fork remodelling.

Modeling SARS-CoV-2 proteins in the CASP-commons experiment

Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection.

Molecular modeling-based analysis of interactions in the RFC-dependent clamp-loading process

NR5A1 c.991-1G > C splice-site variant causes familial 46,XY partial gonadal dysgenesis with incomplete penetrance

New insights into the structures and interactions of bacterial Y-family DNA polymerases

Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea.

Numerical criteria for the evaluation of ab initio predictions of protein structure.

PPI3D: a web server for searching, analyzing and modeling protein–protein, protein–peptide and protein–nucleic acid interactions

Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus.

Ribosomal stalk-captured CARF-RelE ribonuclease inhibits translation following CRISPR signaling

Some measures of comparative performance in the three CASPs.

Spatiotemporal Control of Type III-A CRISPR-Cas Immunity: Coupling DNA Degradation with the Target RNA Recognition.

Structural modeling of protein complexes: Current capabilities and challenges

Structure of Csm2 elucidates the relationship between small subunits of CRISPR-Cas effector complexes.

Structure-based sequence alignment for the beta-trefoil subdomain of the clostridial neurotoxin family provides residue level information about the putative ganglioside binding site

Template-based modeling of diverse protein interactions in CAPRI rounds 38-45

The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes.

The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor.

The N-terminal region of the bacterial DNA polymerase PolC features a pair of domains, both distantly related to domain V of the DNA polymerase III τ subunit.

The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures.

The cytolytic activity of vaginolysin strictly depends on cholesterol and is potentiated by human CD59.

The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes

The path of a protein chain can be approximated by the conformation dictated by interpeptide ionic bridges

The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures

Type III CRISPR-Cas Immunity: Major Differences Brushed Aside

Viral DNA replication: new insights and discoveries from large scale computational analysis

VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes

VoroMQA: Assessment of protein structure quality using interatomic contact areas.

Voronota: A fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls.