Lista de obras - James O. McInerney - Dominio Público Uruguay

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

artículo científico publicado en 2016

A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases

artículo científico publicado en 2011

Adaptive evolution of the human fatty acid synthase gene: support for the cancer selection and fat utilization hypotheses?

artículo científico publicado en 2005

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences

artículo científico publicado en 2002

Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs

artículo científico publicado en 2004

Bipartite network analysis of gene sharings in the microbial world

artículo científico publicado en 2018

Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines

scholarly article by Thomas M. Keane et al published 18 April 2006 in Algorithmica

Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov.

artículo científico publicado en 2003

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

artículo científico publicado en 2016

Detecting adaptive molecular evolution: additional tools for the parasitologist

artículo científico publicado en 2003

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

scholarly article by Christopher J. Creevey et al published 22 December 2004 in Proceedings of the Royal Society B

EGN: a wizard for construction of gene and genome similarity networks

artículo científico publicado en 2013

Endosymbiotic origin and differential loss of eukaryotic genes

artículo científico publicado en 2015

Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations

artículo científico publicado en 2003

Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

artículo científico publicado en 2010

Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes

artículo científico publicado en 2005

Evidence of positive Darwinian selection in putative meningococcal vaccine antigens

artículo científico publicado en 2005

Evolution: A four billion year old metabolism.

artículo científico publicado en 2016

Evolutionary analyses of non-genealogical bonds produced by introgressive descent

artículo científico publicado en 2012

Evolutionary developmental biology: Ghost locus appears

artículo científico publicado en 2014

Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication

artículo científico publicado en 2003

Formation of chimeric genes with essential functions at the origin of eukaryotes.

artículo científico publicado en 2018

Function-related replacement of bacterial siderophore pathways. ⬇️

artículo científico publicado en 2017

Gene evolution and drug discovery

artículo científico publicado en 2006

Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models

artículo científico publicado en 2004

Gene similarity networks provide tools for understanding eukaryote origins and evolution

artículo científico publicado en 2013

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

artículo científico publicado en 2021

Genetics. Paradigm for life.

artículo científico publicado en 2007

Genome Phylogenies Indicate a Meaningful α-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales

scholarly article by David A. Fitzpatrick et al published 8 September 2005 in Molecular Biology and Evolution

Heterogeneous models place the root of the placental mammal phylogeny ⬇️

artículo científico publicado en 2013

Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis

artículo científico publicado en 2015

Horizontal gene transfer is less frequent in eukaryotes than prokaryotes but can be important (retrospective on DOI 10.1002/bies.201300095).

artículo científico publicado en 2017

Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network.

artículo científico publicado en 2012

Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis

artículo científico publicado en 2013

Metazoan opsin evolution reveals a simple route to animal vision ⬇️

artículo científico publicado el 29 de octubre de 2012

Microbiology: Mind the gaps in cellular evolution ⬇️

artículo científico publicado en 2017

Molecular evidence for dim-light vision in the last common ancestor of the vertebrates

article

Molecular phylogeny of the Drosophila tripunctata and closely related species groups (Diptera: Drosophilidae).

artículo científico publicado en 2009

More than tree dimensions: inter-lineage evolution's ecological importance

artículo científico publicado en 2013

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

artículo científico publicado en 2007

Networks: expanding evolutionary thinking

artículo científico publicado en 2013

New approaches for unravelling reassortment pathways

artículo científico publicado en 2013

On the desirability of models for inferring genome phylogenies

scientific article published on 03 November 2005

Origins of major archaeal clades correspond to gene acquisitions from bacteria

artículo científico publicado en 2014

Planctomycetes and eukaryotes: a case of analogy not homology

artículo científico publicado en 2011

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

artículo científico publicado en 2014

Recurring cluster and operon assembly for Phenylacetate degradation genes

artículo científico publicado en 2009

Reply to 'The population genetics of pangenomes'.

artículo científico publicado en 2017

SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report

artículo científico publicado en 2014

Society for Molecular Biology and Evolution, Council and Business Meetings, 2015, Vienna Austria

artículo científico publicado en 2015

Supertrees disentangle the chimerical origin of eukaryotic genomes

artículo científico publicado en 2007

Systemic effects of deep brain stimulation on synergic control in Parkinson's disease

artículo científico publicado en 2018

TOPD/FMTS: a new software to compare phylogenetic trees

artículo científico publicado en 2007

The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa

artículo científico publicado en 2005

The causes of protein evolutionary rate variation

artículo científico publicado en 2006

The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences

artículo científico publicado en 2011

The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes

artículo científico publicado en 2006

The network of life: genome beginnings and evolution. Introduction

artículo científico publicado en 2009

The prokaryotic tree of life: past, present... and future?

artículo científico publicado en 2008

The public goods hypothesis for the evolution of life on Earth ⬇️

artículo científico publicado el 23 de agosto de 2011

The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data

artículo científico publicado en 2015

The role of public goods in planetary evolution

artículo científico publicado en 2017

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

artículo científico publicado en 2005

The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods

artículo científico publicado en 2008

Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1.

artículo científico publicado en 2004

Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates

artículo científico publicado en 2013

Trees from trees: construction of phylogenetic supertrees using clann

artículo científico publicado en 2009

Why prokaryotes have pangenomes ⬇️

artículo científico publicado en 2017

Lista de obras de James O. McInerney

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases

Adaptive evolution of the human fatty acid synthase gene: support for the cancer selection and fat utilization hypotheses?

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences

Analysis of gene expression in the bovine corpus luteum through generation and characterisation of 960 ESTs

Bipartite network analysis of gene sharings in the microbial world

Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines

Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov.

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

Detecting adaptive molecular evolution: additional tools for the parasitologist

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

EGN: a wizard for construction of gene and genome similarity networks

Endosymbiotic origin and differential loss of eukaryotic genes

Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations

Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

Evidence for heterogeneous selective pressures in the evolution of the env gene in different human immunodeficiency virus type 1 subtypes

Evidence of positive Darwinian selection in putative meningococcal vaccine antigens

Evolution: A four billion year old metabolism.

Evolutionary analyses of non-genealogical bonds produced by introgressive descent

Evolutionary developmental biology: Ghost locus appears

Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication

Formation of chimeric genes with essential functions at the origin of eukaryotes.

Function-related replacement of bacterial siderophore pathways. ⬇️

Gene evolution and drug discovery

Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models

Gene similarity networks provide tools for understanding eukaryote origins and evolution

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

Genetics. Paradigm for life.

Genome Phylogenies Indicate a Meaningful α-Proteobacterial Phylogeny and Support a Grouping of the Mitochondria with the Rickettsiales

Heterogeneous models place the root of the placental mammal phylogeny ⬇️

Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis

Horizontal gene transfer is less frequent in eukaryotes than prokaryotes but can be important (retrospective on DOI 10.1002/bies.201300095).

Increased genome sampling reveals a dynamic relationship between gene duplicability and the structure of the primate protein-protein interaction network.

Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis

Metazoan opsin evolution reveals a simple route to animal vision ⬇️

Microbiology: Mind the gaps in cellular evolution ⬇️

Molecular evidence for dim-light vision in the last common ancestor of the vertebrates

Molecular phylogeny of the Drosophila tripunctata and closely related species groups (Diptera: Drosophilidae).

More than tree dimensions: inter-lineage evolution's ecological importance

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

Networks: expanding evolutionary thinking

New approaches for unravelling reassortment pathways

On the desirability of models for inferring genome phylogenies

Origins of major archaeal clades correspond to gene acquisitions from bacteria

Planctomycetes and eukaryotes: a case of analogy not homology

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

Recurring cluster and operon assembly for Phenylacetate degradation genes

Reply to 'The population genetics of pangenomes'.

SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report

Society for Molecular Biology and Evolution, Council and Business Meetings, 2015, Vienna Austria

Supertrees disentangle the chimerical origin of eukaryotic genomes

Systemic effects of deep brain stimulation on synergic control in Parkinson's disease

TOPD/FMTS: a new software to compare phylogenetic trees

The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa

The causes of protein evolutionary rate variation

The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences

The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes

The network of life: genome beginnings and evolution. Introduction

The prokaryotic tree of life: past, present... and future?

The public goods hypothesis for the evolution of life on Earth ⬇️

The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data

The role of public goods in planetary evolution

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods

Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1.

Translational selection frequently overcomes genetic drift in shaping synonymous codon usage patterns in vertebrates

Trees from trees: construction of phylogenetic supertrees using clann

Why prokaryotes have pangenomes ⬇️