Lista de obras - Marco Punta - Dominio Público Uruguay

A knowledge-based scale for amino acid membrane propensity

artículo científico publicado en 2003

An estimated 5% of new protein structures solved today represent a new Pfam family

scientific article published on 12 October 2013

AntiFam: a tool to help identify spurious ORFs in protein annotation

artículo científico publicado en 2012

Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery

artículo científico publicado en 2005

CASP6 assessment of contact prediction.

artículo científico publicado en 2005

Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report.

artículo científico publicado en 2013

Crystal structure of a phosphorylation-coupled saccharide transporter

artículo científico publicado en 2011

Crystal structure of a potassium ion transporter, TrkH

artículo científico publicado en 2011

Crystal structures of three representatives of a new Pfam family PF14869 (DUF4488) suggest they function in sugar binding/uptake

artículo científico publicado en 2014

Erratum.

artículo científico publicado en 2008

Genome3D: exploiting structure to help users understand their sequences

artículo científico publicado en 2015

Homologue structure of the SLAC1 anion channel for closing stomata in leaves

artículo científico publicado en 2010

Homology-Based Annotation of Large Protein Datasets

artículo científico publicado en 2016

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

Identifying cysteines and histidines in transition-metal-binding sites using support vector machines and neural networks.

artículo científico publicado en 2006

Improved disorder prediction by combination of orthogonal approaches

artículo científico publicado en 2009

InterPro in 2011: new developments in the family and domain prediction database

artículo científico publicado en 2012

InterPro in 2011: new developments in the family and domain prediction database

artículo científico publicado en 2012

LUD, a new protein domain associated with lactate utilization

artículo científico publicado en 2013

Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome

artículo científico publicado en 2009

Membrane protein prediction methods

artículo científico publicado en 2007

Metal Binding in Proteins: Machine Learning Complements X-Ray Absorption Spectroscopy

scholarly article by Marco Lippi et al published 2012 in Lecture Notes in Computer Science

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence

artículo científico publicado en 2008

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

scientific article published in Nature Communications

Molecular modeling studies on CNG channel from bovine retinal rod: a structural model of the cyclic nucleotide-binding domain

artículo científico publicado en 2003

Movement of the C-helix during the gating of cyclic nucleotide-gated channels

artículo científico publicado en 2002

NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli

artículo científico publicado en 2012

Natively unstructured regions in proteins identified from contact predictions

artículo científico publicado en 2007

Neural networks predict protein structure and function.

artículo científico publicado en 2008

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily

artículo científico publicado en 2014

PROFcon: novel prediction of long-range contacts.

artículo científico publicado en 2005

Pfam: the protein families database

artículo científico publicado en 2014

PredictProtein--an open resource for online prediction of protein structural and functional features

artículo científico publicado en 2014

Prediction and analysis of intrinsically disordered proteins

artículo científico publicado en 2015

Protein disorder--a breakthrough invention of evolution?

artículo científico publicado en 2011

Protein folding rates estimated from contact predictions.

artículo científico publicado en 2005

Solution NMR structures of proteins VPA0419 fromVibrio parahaemolyticusand yiiS fromShigella flexneriprovide structural coverage for protein domain family PFAM 04175

artículo científico publicado en 2010

Structural genomics plucks high-hanging membrane proteins

artículo científico publicado en 2012

Structural genomics reveals EVE as a new ASCH/PUA-related domain

artículo científico publicado en 2009

Structural genomics target selection for the New York consortium on membrane protein structure.

artículo científico publicado en 2009

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

artículo científico publicado en 2015

The InterPro protein families database: the classification resource after 15 years

artículo científico publicado en 2015

The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins

artículo científico publicado en 2010

The Pfam protein families database

artículo científico publicado en 2012

The Pfam protein families database: towards a more sustainable future

artículo científico publicado en 2015

The SHOCT domain: a widespread domain under-represented in model organisms

artículo científico publicado en 2013

The challenge of increasing Pfam coverage of the human proteome

artículo científico publicado en 2013

The challenge of increasing Pfam coverage of the human proteome

artículo científico publicado en 2013

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

artículo científico publicado en 2015

The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function

artículo científico publicado en 2008

Lista de obras de Marco Punta

A knowledge-based scale for amino acid membrane propensity

An estimated 5% of new protein structures solved today represent a new Pfam family

AntiFam: a tool to help identify spurious ORFs in protein annotation

Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery

CASP6 assessment of contact prediction.

Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 workshop report.

Crystal structure of a phosphorylation-coupled saccharide transporter

Crystal structure of a potassium ion transporter, TrkH

Crystal structures of three representatives of a new Pfam family PF14869 (DUF4488) suggest they function in sugar binding/uptake

Erratum.

Genome3D: exploiting structure to help users understand their sequences

Homologue structure of the SLAC1 anion channel for closing stomata in leaves

Homology-Based Annotation of Large Protein Datasets

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

Identifying cysteines and histidines in transition-metal-binding sites using support vector machines and neural networks.

Improved disorder prediction by combination of orthogonal approaches

InterPro in 2011: new developments in the family and domain prediction database

InterPro in 2011: new developments in the family and domain prediction database

LUD, a new protein domain associated with lactate utilization

Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome

Membrane protein prediction methods

Metal Binding in Proteins: Machine Learning Complements X-Ray Absorption Spectroscopy

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

Molecular modeling studies on CNG channel from bovine retinal rod: a structural model of the cyclic nucleotide-binding domain

Movement of the C-helix during the gating of cyclic nucleotide-gated channels

NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli

Natively unstructured regions in proteins identified from contact predictions

Neural networks predict protein structure and function.

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily

PROFcon: novel prediction of long-range contacts.

Pfam: the protein families database

PredictProtein--an open resource for online prediction of protein structural and functional features

Prediction and analysis of intrinsically disordered proteins

Protein disorder--a breakthrough invention of evolution?

Protein folding rates estimated from contact predictions.

Solution NMR structures of proteins VPA0419 fromVibrio parahaemolyticusand yiiS fromShigella flexneriprovide structural coverage for protein domain family PFAM 04175

Structural genomics plucks high-hanging membrane proteins

Structural genomics reveals EVE as a new ASCH/PUA-related domain

Structural genomics target selection for the New York consortium on membrane protein structure.

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions

The InterPro protein families database: the classification resource after 15 years

The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins

The Pfam protein families database

The Pfam protein families database: towards a more sustainable future

The SHOCT domain: a widespread domain under-represented in model organisms

The challenge of increasing Pfam coverage of the human proteome

The challenge of increasing Pfam coverage of the human proteome

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

The rough guide to in silico function prediction, or how to use sequence and structure information to predict protein function