Lista de obras -

A COMPREHENSIVE FRAMEWORK FOR CLASSIFICATION OF NUCLEI IN DIGITAL MICROSCOPY IMAGING: AN APPLICATION TO DIFFUSE GLIOMAS.

artículo científico publicado en 2011

A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images

artículo científico publicado en 2017

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments ⬇️

artículo científico publicado el 1 de abril de 2008

A Temporal Abstraction-based Extract, Transform and Load Process for Creating Registry Databases for Research ⬇️

artículo científico publicado el 7 de marzo de 2011

A data model and database for high-resolution pathology analytical image informatics ⬇️

artículo científico publicado el 26 de julio de 2011

A high-performance spatial database based approach for pathology imaging algorithm evaluation ⬇️

artículo científico publicado el 14 de marzo de 2013

A roadmap for caGrid, an enterprise Grid architecture for biomedical research.

artículo científico publicado en 2008

An XML-based system for synthesis of data from disparate databases

artículo científico publicado en 2006

An application of a service-oriented system to support array annotation in custom chip design for epigenomic analysis.

artículo científico publicado en 2008

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets

artículo científico publicado en 2008

An informatics framework for testing data integrity and correctness of federated biomedical databases.

artículo científico publicado en 2011

Application Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs: A Case Study with Microscopy Image Analysis

artículo científico publicado en 2015

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

artículo científico publicado en 2013

Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU: A Case Study from Microscopy Image Analysis

artículo científico publicado en 2014

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel Xeon Phi™

Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies ⬇️

artículo científico publicado el 12 de noviembre de 2011

Distributed processing of very large datasets with DataCutter

Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems

artículo científico publicado en 2014

Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines

artículo científico publicado en 2013

Efficient irregular wavefront propagation algorithms on Intel(®) Xeon Phi(™).

artículo científico publicado en 2015

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research

artículo científico publicado en 2009

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis

scholarly article by Naiyun Zhou et al published February 2017 in Proceedings of SPIE

Feature-based Analysis of Large-scale Spatio-Temporal Sensor Data on Hybrid Architectures

artículo científico publicado en 2013

GridIMAGE: a novel use of grid computing to support interactive human and computer-assisted detection decision support

artículo científico publicado en 2007

HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH

artículo científico publicado en 2009

Hierarchical nucleus segmentation in digital pathology images

artículo científico publicado en 2016

High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates

artículo científico

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology ⬇️

artículo científico publicado el 23 de mayo de 2011

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response ⬇️

artículo científico publicado el 1 de enero de 2011

Integrated morphologic analysis for the identification and characterization of disease subtypes

artículo científico publicado en 2012

Large-scale biomedical image analysis in grid environments

artículo científico publicado en 2008

MORPHOLOGICAL SIGNATURES AND GENOMIC CORRELATES IN GLIOBLASTOMA

artículo científico publicado en 2011

Malignant-lesion segmentation using 4D co-occurrence texture analysis applied to dynamic contrast-enhanced magnetic resonance breast image data

artículo científico publicado en 2007

Managing and Querying Whole Slide Images ⬇️

artículo científico publicado el 16 de febrero de 2012

Methods for Segmentation and Classification of Digital Microscopy Tissue Images

Multi-scale learning based segmentation of glands in digital colonrectal pathology images

artículo científico publicado en 2016

OpenHealth Platform for Interactive Contextualization of Population Health Open Data

artículo científico publicado en 2015

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems

Parallel content-based sub-image retrieval using hierarchical searching

artículo científico publicado en 2013

Parameterized Specification, Configuration and Execution of Data-Intensive Scientific Workflows

artículo científico publicado en 2010

Redactable and auditable data access for bioinformatics research

artículo científico publicado en 2013

Region Templates: Data Representation and Management for High-Throughput Image Analysis

artículo científico publicado en 2014

Safe "cloudification" of large images through picker APIs

scientific article published on January 2016

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies

artículo científico publicado en 2015

Semantically Interoperable XML Data

artículo científico publicado en 2013

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows

scientific article published on 13 March 2019

Sharing data and analytical resources securely in a biomedical research Grid environment

artículo científico publicado en 2008

SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing

article

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images.

artículo científico publicado en 2018

Temporal abstraction-based clinical phenotyping with Eureka!

artículo científico publicado en 2013

The Analytic Information Warehouse (AIW): a platform for analytics using electronic health record data

artículo científico publicado en 2013

The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.

artículo científico publicado en 2007

The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

artículo científico publicado en 2010

The tumor microenvironment strongly impacts master transcriptional regulators and gene expression class of glioblastoma

artículo científico publicado en 2012

The virtual microscope

artículo científico publicado en 2003

Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research

artículo científico publicado en 2017

Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma ⬇️

artículo científico publicado el 1 de enero de 2011

VirtualPACS--a federating gateway to access remote image data resources over the grid

artículo científico publicado en 2009

Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows

scholarly article published May 2016

caGrid 1.0: a Grid enterprise architecture for cancer research.

artículo científico publicado en 2007

caGrid 1.0: an enterprise Grid infrastructure for biomedical research

artículo científico publicado en 2007

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid

artículo científico

e-Science, caGrid, and Translational Biomedical Research

artículo científico publicado en 2008

Lista de obras de

A COMPREHENSIVE FRAMEWORK FOR CLASSIFICATION OF NUCLEI IN DIGITAL MICROSCOPY IMAGING: AN APPLICATION TO DIFFUSE GLIOMAS.

A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments ⬇️

A Temporal Abstraction-based Extract, Transform and Load Process for Creating Registry Databases for Research ⬇️

A data model and database for high-resolution pathology analytical image informatics ⬇️

A high-performance spatial database based approach for pathology imaging algorithm evaluation ⬇️

A roadmap for caGrid, an enterprise Grid architecture for biomedical research.

An XML-based system for synthesis of data from disparate databases

An application of a service-oriented system to support array annotation in custom chip design for epigenomic analysis.

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets

An informatics framework for testing data integrity and correctness of federated biomedical databases.

Application Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs: A Case Study with Microscopy Image Analysis

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU: A Case Study from Microscopy Image Analysis

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel Xeon Phi™

Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies ⬇️

Distributed processing of very large datasets with DataCutter

Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems

Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines

Efficient irregular wavefront propagation algorithms on Intel(®) Xeon Phi(™).

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis

Feature-based Analysis of Large-scale Spatio-Temporal Sensor Data on Hybrid Architectures

GridIMAGE: a novel use of grid computing to support interactive human and computer-assisted detection decision support

HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH

Hierarchical nucleus segmentation in digital pathology images

High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology ⬇️

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response ⬇️

Integrated morphologic analysis for the identification and characterization of disease subtypes

Large-scale biomedical image analysis in grid environments

MORPHOLOGICAL SIGNATURES AND GENOMIC CORRELATES IN GLIOBLASTOMA

Malignant-lesion segmentation using 4D co-occurrence texture analysis applied to dynamic contrast-enhanced magnetic resonance breast image data

Managing and Querying Whole Slide Images ⬇️

Methods for Segmentation and Classification of Digital Microscopy Tissue Images

Multi-scale learning based segmentation of glands in digital colonrectal pathology images

OpenHealth Platform for Interactive Contextualization of Population Health Open Data

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems

Parallel content-based sub-image retrieval using hierarchical searching

Parameterized Specification, Configuration and Execution of Data-Intensive Scientific Workflows

Redactable and auditable data access for bioinformatics research

Region Templates: Data Representation and Management for High-Throughput Image Analysis

Safe "cloudification" of large images through picker APIs

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies

Semantically Interoperable XML Data

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows

Sharing data and analytical resources securely in a biomedical research Grid environment

SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images.

Temporal abstraction-based clinical phenotyping with Eureka!

The Analytic Information Warehouse (AIW): a platform for analytics using electronic health record data

The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.

The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

The tumor microenvironment strongly impacts master transcriptional regulators and gene expression class of glioblastoma

The virtual microscope

Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research

Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma ⬇️

VirtualPACS--a federating gateway to access remote image data resources over the grid

Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows

caGrid 1.0: a Grid enterprise architecture for cancer research.

caGrid 1.0: an enterprise Grid infrastructure for biomedical research

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid

e-Science, caGrid, and Translational Biomedical Research